Protein–RNA interactions for Protein: Q8NDV3

SMC1B, Structural maintenance of chromosomes protein 1B, humanhuman

Predictions only

Length 1,235 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
SMC1BQ8NDV3 FAM135A-205ENST00000418814 6415 ntTSL 5 BASIC18.74■□□□□ 0.59
SMC1BQ8NDV3 RAI2-201ENST00000331511 2317 ntAPPRIS P1 TSL 2 BASIC18.74■□□□□ 0.59
SMC1BQ8NDV3 TCP11-228ENST00000611141 2130 ntAPPRIS ALT2 TSL 1 (best) BASIC18.74■□□□□ 0.59
SMC1BQ8NDV3 FAM213B-202ENST00000378425 2665 ntAPPRIS ALT2 TSL 2 BASIC18.74■□□□□ 0.59
SMC1BQ8NDV3 GNE-201ENST00000377902 2565 ntAPPRIS P1 TSL 1 (best) BASIC18.74■□□□□ 0.59
SMC1BQ8NDV3 IL15-201ENST00000296545 2472 ntAPPRIS P1 TSL 1 (best) BASIC18.74■□□□□ 0.59
SMC1BQ8NDV3 FOS-202ENST00000535987 1402 ntTSL 2 BASIC18.74■□□□□ 0.59
SMC1BQ8NDV3 HOTTIP-202ENST00000472494 2285 ntTSL 2 BASIC18.74■□□□□ 0.59
SMC1BQ8NDV3 CENPBD1P1-204ENST00000487264 1308 ntTSL 1 (best) BASIC18.74■□□□□ 0.59
SMC1BQ8NDV3 RCAN3-209ENST00000616511 2527 ntTSL 1 (best) BASIC18.73■□□□□ 0.59
SMC1BQ8NDV3 PEPD-202ENST00000397032 1754 ntTSL 2 BASIC18.73■□□□□ 0.59
SMC1BQ8NDV3 ADARB1-202ENST00000360697 6604 ntTSL 1 (best) BASIC18.73■□□□□ 0.59
SMC1BQ8NDV3 CCT7-216ENST00000540468 1674 ntTSL 2 BASIC18.73■□□□□ 0.59
SMC1BQ8NDV3 PLCD3-212ENST00000619929 6107 ntAPPRIS P1 TSL 1 (best) BASIC18.73■□□□□ 0.59
SMC1BQ8NDV3 RUVBL1-202ENST00000464873 2126 ntTSL 2 BASIC18.73■□□□□ 0.59
SMC1BQ8NDV3 IDUA-210ENST00000514224 2130 ntTSL 2 BASIC18.73■□□□□ 0.59
SMC1BQ8NDV3 GINM1-201ENST00000367419 2024 ntAPPRIS P1 TSL 1 (best) BASIC18.73■□□□□ 0.59
SMC1BQ8NDV3 TADA3-201ENST00000301964 2355 ntAPPRIS P1 TSL 1 (best) BASIC18.73■□□□□ 0.59
SMC1BQ8NDV3 CT62-201ENST00000449977 1825 ntAPPRIS P2 TSL 1 (best) BASIC18.73■□□□□ 0.59
SMC1BQ8NDV3 APP-202ENST00000348990 3355 ntTSL 1 (best) BASIC18.73■□□□□ 0.59
SMC1BQ8NDV3 RRAGD-202ENST00000369415 4900 ntAPPRIS P1 TSL 1 (best) BASIC18.73■□□□□ 0.59
SMC1BQ8NDV3 BATF-201ENST00000286639 980 ntAPPRIS P1 TSL 1 (best) BASIC18.73■□□□□ 0.59
SMC1BQ8NDV3 CITED1-202ENST00000373619 886 ntAPPRIS P3 TSL 1 (best) BASIC18.73■□□□□ 0.59
SMC1BQ8NDV3 AL355483.2-201ENST00000421637 675 ntTSL 3 BASIC18.73■□□□□ 0.59
SMC1BQ8NDV3 AC011742.3-201ENST00000439053 820 ntBASIC18.73■□□□□ 0.59
SMC1BQ8NDV3 EFCAB10-201ENST00000460135 717 ntTSL 2 BASIC18.73■□□□□ 0.59
SMC1BQ8NDV3 AC012618.1-201ENST00000461223 412 ntBASIC18.73■□□□□ 0.59
SMC1BQ8NDV3 SZRD1-203ENST00000471507 892 ntAPPRIS ALT1 TSL 2 BASIC18.73■□□□□ 0.59
SMC1BQ8NDV3 AC239802.2-201ENST00000532137 554 ntTSL 4 BASIC18.73■□□□□ 0.59
SMC1BQ8NDV3 PPP1R32-205ENST00000538185 1107 ntTSL 2 BASIC18.73■□□□□ 0.59
SMC1BQ8NDV3 AC124947.2-201ENST00000547118 1133 ntBASIC18.73■□□□□ 0.59
SMC1BQ8NDV3 AL161670.2-201ENST00000557650 1227 ntBASIC18.73■□□□□ 0.59
SMC1BQ8NDV3 AL645939.5-201ENST00000606834 243 ntBASIC18.73■□□□□ 0.59
SMC1BQ8NDV3 ZCCHC4-206ENST00000612982 938 ntTSL 5 BASIC18.73■□□□□ 0.59
SMC1BQ8NDV3 DPAGT1-203ENST00000409993 3274 ntAPPRIS P1 TSL 2 BASIC18.73■□□□□ 0.59
SMC1BQ8NDV3 CAPN15-201ENST00000219611 4744 ntAPPRIS P1 TSL 1 (best) BASIC18.73■□□□□ 0.59
SMC1BQ8NDV3 RABL6-201ENST00000311502 3091 ntAPPRIS P3 TSL 1 (best) BASIC18.73■□□□□ 0.59
SMC1BQ8NDV3 L2HGDH-202ENST00000267436 6414 ntAPPRIS P1 TSL 1 (best) BASIC18.73■□□□□ 0.59
SMC1BQ8NDV3 HNRNPD-201ENST00000313899 3033 ntAPPRIS P4 TSL 1 (best) BASIC18.73■□□□□ 0.59
SMC1BQ8NDV3 ZDHHC20-202ENST00000382466 5338 ntAPPRIS P3 TSL 1 (best) BASIC18.73■□□□□ 0.59
SMC1BQ8NDV3 LETM2-201ENST00000297720 1693 ntTSL 2 BASIC18.73■□□□□ 0.59
SMC1BQ8NDV3 PMAIP1-202ENST00000316660 1948 ntAPPRIS P1 TSL 1 (best) BASIC18.72■□□□□ 0.59
SMC1BQ8NDV3 SMTNL2-201ENST00000338859 1919 ntTSL 1 (best) BASIC18.72■□□□□ 0.59
SMC1BQ8NDV3 AL512652.2-201ENST00000625156 1716 ntBASIC18.72■□□□□ 0.59
SMC1BQ8NDV3 RSPO1-204ENST00000615459 2331 ntTSL 2 BASIC18.72■□□□□ 0.59
SMC1BQ8NDV3 HPGD-213ENST00000541923 2920 ntTSL 2 BASIC18.72■□□□□ 0.59
SMC1BQ8NDV3 TMEM140-201ENST00000275767 1997 ntAPPRIS P1 TSL 1 (best) BASIC18.72■□□□□ 0.59
SMC1BQ8NDV3 SLC43A1-201ENST00000278426 2598 ntAPPRIS P1 TSL 1 (best) BASIC18.72■□□□□ 0.59
SMC1BQ8NDV3 ADAMTS16-201ENST00000274181 4979 ntAPPRIS P1 TSL 2 BASIC18.72■□□□□ 0.59
SMC1BQ8NDV3 VKORC1L1-201ENST00000360768 5899 ntAPPRIS P1 TSL 1 (best) BASIC18.72■□□□□ 0.59
SMC1BQ8NDV3 IL9-201ENST00000274520 591 ntAPPRIS P1 TSL 1 (best) BASIC18.72■□□□□ 0.59
SMC1BQ8NDV3 CACNG5-201ENST00000307139 926 ntAPPRIS P1 TSL 1 (best) BASIC18.72■□□□□ 0.59
SMC1BQ8NDV3 RPSAP31-201ENST00000416648 895 ntBASIC18.72■□□□□ 0.59
SMC1BQ8NDV3 AC131097.3-203ENST00000420272 1193 ntTSL 5 BASIC18.72■□□□□ 0.59
SMC1BQ8NDV3 AL109767.1-201ENST00000429450 564 ntTSL 4 BASIC18.72■□□□□ 0.59
SMC1BQ8NDV3 NME2-207ENST00000514264 850 ntAPPRIS P1 TSL 2 BASIC18.72■□□□□ 0.59
SMC1BQ8NDV3 CDK2AP2-205ENST00000531506 634 ntTSL 2 BASIC18.72■□□□□ 0.59
SMC1BQ8NDV3 CYB5D1-202ENST00000570446 570 ntTSL 4 BASIC18.72■□□□□ 0.59
SMC1BQ8NDV3 CENPX-208ENST00000584347 799 ntTSL 2 BASIC18.72■□□□□ 0.59
SMC1BQ8NDV3 AC000095.1-201ENST00000603208 874 ntBASIC18.72■□□□□ 0.59
SMC1BQ8NDV3 AP001065.2-201ENST00000617205 644 ntBASIC18.72■□□□□ 0.59
SMC1BQ8NDV3 AL031665.1-201ENST00000619766 572 ntTSL 4 BASIC18.72■□□□□ 0.59
SMC1BQ8NDV3 B4GALT2-202ENST00000356836 2629 ntAPPRIS P1 TSL 2 BASIC18.72■□□□□ 0.59
SMC1BQ8NDV3 TRAF4-201ENST00000262395 2923 ntAPPRIS P1 TSL 1 (best) BASIC18.72■□□□□ 0.59
SMC1BQ8NDV3 DNAJB2-201ENST00000336576 3176 ntTSL 1 (best) BASIC18.72■□□□□ 0.59
SMC1BQ8NDV3 NOMO2-202ENST00000381474 3911 ntAPPRIS ALT2 TSL 5 BASIC18.72■□□□□ 0.59
SMC1BQ8NDV3 NFATC2-206ENST00000609943 5690 ntAPPRIS ALT2 TSL 1 (best) BASIC18.72■□□□□ 0.59
SMC1BQ8NDV3 PRKAG1-206ENST00000548065 2071 ntAPPRIS P1 TSL 1 (best) BASIC18.72■□□□□ 0.59
SMC1BQ8NDV3 KRT8P35-201ENST00000483942 1338 ntBASIC18.72■□□□□ 0.59
SMC1BQ8NDV3 PTP4A3-202ENST00000349124 2710 ntTSL 1 (best) BASIC18.72■□□□□ 0.59
SMC1BQ8NDV3 DOK5-201ENST00000262593 1963 ntAPPRIS P1 TSL 1 (best) BASIC18.72■□□□□ 0.59
SMC1BQ8NDV3 KDM4B-201ENST00000159111 5593 ntAPPRIS P1 TSL 1 (best) BASIC18.71■□□□□ 0.59
SMC1BQ8NDV3 RGS12-203ENST00000344733 5469 ntAPPRIS P4 TSL 1 (best) BASIC18.71■□□□□ 0.59
SMC1BQ8NDV3 NRXN1-220ENST00000611589 1857 ntTSL 5 BASIC18.71■□□□□ 0.59
SMC1BQ8NDV3 U82695.1-201ENST00000635752 1889 ntBASIC18.71■□□□□ 0.59
SMC1BQ8NDV3 TRAF2-201ENST00000247668 2264 ntAPPRIS P1 TSL 1 (best) BASIC18.71■□□□□ 0.59
SMC1BQ8NDV3 TRIM13-201ENST00000356017 1637 ntAPPRIS ALT1 TSL 1 (best) BASIC18.71■□□□□ 0.59
SMC1BQ8NDV3 SNHG1-213ENST00000540725 1374 ntTSL 1 (best) BASIC18.71■□□□□ 0.59
SMC1BQ8NDV3 NOL4L-210ENST00000616976 1376 ntTSL 5 BASIC18.71■□□□□ 0.59
SMC1BQ8NDV3 TOM1L1-204ENST00000570371 2442 ntTSL 5 BASIC18.71■□□□□ 0.59
SMC1BQ8NDV3 RXRB-202ENST00000374685 2846 ntAPPRIS ALT1 TSL 1 (best) BASIC18.71■□□□□ 0.59
SMC1BQ8NDV3 RUVBL1-201ENST00000322623 1761 ntAPPRIS P1 TSL 1 (best) BASIC18.71■□□□□ 0.59
SMC1BQ8NDV3 GOLGA2P2Y-202ENST00000423852 1506 ntBASIC18.71■□□□□ 0.59
SMC1BQ8NDV3 SHOX2-202ENST00000425436 1513 ntTSL 5 BASIC18.71■□□□□ 0.59
SMC1BQ8NDV3 ZNF281-201ENST00000294740 4891 ntAPPRIS P3 TSL 1 (best) BASIC18.71■□□□□ 0.59
SMC1BQ8NDV3 FZD10-201ENST00000229030 3281 ntAPPRIS P1 BASIC18.71■□□□□ 0.59
SMC1BQ8NDV3 ODF4-201ENST00000328248 1156 ntAPPRIS P3 TSL 1 (best) BASIC18.71■□□□□ 0.59
SMC1BQ8NDV3 CNR1-201ENST00000362094 1252 ntTSL 1 (best) BASIC18.71■□□□□ 0.59
SMC1BQ8NDV3 SMS-201ENST00000379404 1174 ntTSL 3 BASIC18.71■□□□□ 0.59
SMC1BQ8NDV3 TISP43-201ENST00000409793 538 ntTSL 4 BASIC18.71■□□□□ 0.59
SMC1BQ8NDV3 AP001056.1-201ENST00000411956 821 ntTSL 3 BASIC18.71■□□□□ 0.59
SMC1BQ8NDV3 ZMYND10-AS1-201ENST00000440013 250 ntTSL 3 BASIC18.71■□□□□ 0.59
SMC1BQ8NDV3 SIRPB2-203ENST00000444444 884 ntTSL 2 BASIC18.71■□□□□ 0.59
SMC1BQ8NDV3 AL160290.2-202ENST00000448671 574 ntTSL 3 BASIC18.71■□□□□ 0.59
SMC1BQ8NDV3 METTL6-204ENST00000450816 1221 ntTSL 2 BASIC18.71■□□□□ 0.59
SMC1BQ8NDV3 AGTRAP-206ENST00000452018 809 ntTSL 2 BASIC18.71■□□□□ 0.59
SMC1BQ8NDV3 OARD1-204ENST00000464633 717 ntTSL 2 BASIC18.71■□□□□ 0.59
SMC1BQ8NDV3 MPZL3-203ENST00000525386 973 ntTSL 1 (best) BASIC18.71■□□□□ 0.59
SMC1BQ8NDV3 SMIM22-209ENST00000591870 355 ntAPPRIS ALT2 TSL 2 BASIC18.71■□□□□ 0.59
SMC1BQ8NDV3 AC011462.2-201ENST00000598887 344 ntTSL 5 BASIC18.71■□□□□ 0.59
Retrieved 100 of 98,524 protein–RNA pairs in 49.3 ms