Protein–RNA interactions for Protein: Q3V6T2

CCDC88A, Girdin, humanhuman

Predictions only

Length 1,871 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
CCDC88AQ3V6T2 ZCCHC17-206ENST00000616393 1534 ntTSL 5 BASIC19.18■□□□□ 0.66
CCDC88AQ3V6T2 FAM227B-201ENST00000299338 2008 ntAPPRIS P3 TSL 2 BASIC19.18■□□□□ 0.66
CCDC88AQ3V6T2 TCTN1-202ENST00000397655 1879 ntTSL 1 (best) BASIC19.18■□□□□ 0.66
CCDC88AQ3V6T2 PCBP4-205ENST00000461554 2147 ntAPPRIS P1 TSL 1 (best) BASIC19.18■□□□□ 0.66
CCDC88AQ3V6T2 AC100861.1-202ENST00000500853 1970 ntTSL 2 BASIC19.18■□□□□ 0.66
CCDC88AQ3V6T2 RCOR3-204ENST00000452621 1827 ntTSL 2 BASIC19.18■□□□□ 0.66
CCDC88AQ3V6T2 SHISA5-209ENST00000443308 1933 ntTSL 2 BASIC19.18■□□□□ 0.66
CCDC88AQ3V6T2 ASB7-202ENST00000343276 1694 ntTSL 1 (best) BASIC19.18■□□□□ 0.66
CCDC88AQ3V6T2 TP73-209ENST00000603362 1668 ntTSL 5 BASIC19.18■□□□□ 0.66
CCDC88AQ3V6T2 SULT2B1-202ENST00000323090 1447 ntAPPRIS ALT2 TSL 1 (best) BASIC19.18■□□□□ 0.66
CCDC88AQ3V6T2 ACVR1C-201ENST00000243349 8994 ntAPPRIS P1 TSL 1 (best) BASIC19.18■□□□□ 0.66
CCDC88AQ3V6T2 GFAP-233ENST00000639277 1783 ntTSL 5 BASIC19.18■□□□□ 0.66
CCDC88AQ3V6T2 ZBTB45P2-201ENST00000452245 1531 ntBASIC19.18■□□□□ 0.66
CCDC88AQ3V6T2 TNFAIP8L2-201ENST00000368910 1178 ntAPPRIS P1 TSL 1 (best) BASIC19.18■□□□□ 0.66
CCDC88AQ3V6T2 RBAK-RBAKDN-201ENST00000396904 766 ntAPPRIS P2 TSL 4 BASIC19.18■□□□□ 0.66
CCDC88AQ3V6T2 RBAK-RBAKDN-202ENST00000407184 1001 ntAPPRIS ALT2 TSL 2 BASIC19.18■□□□□ 0.66
CCDC88AQ3V6T2 TISP43-201ENST00000409793 538 ntTSL 4 BASIC19.18■□□□□ 0.66
CCDC88AQ3V6T2 PHKG1P2-201ENST00000457537 863 ntBASIC19.18■□□□□ 0.66
CCDC88AQ3V6T2 AC026410.3-201ENST00000514280 936 ntBASIC19.18■□□□□ 0.66
CCDC88AQ3V6T2 AP006333.2-201ENST00000544948 732 ntTSL 3 BASIC19.18■□□□□ 0.66
CCDC88AQ3V6T2 FGFR3P5-201ENST00000564496 886 ntBASIC19.18■□□□□ 0.66
CCDC88AQ3V6T2 AC009486.1-201ENST00000569860 813 ntBASIC19.18■□□□□ 0.66
CCDC88AQ3V6T2 LRRFIP1P1-201ENST00000498774 2246 ntBASIC19.18■□□□□ 0.66
CCDC88AQ3V6T2 SGCZ-201ENST00000382080 2234 ntAPPRIS P1 TSL 5 BASIC19.17■□□□□ 0.66
CCDC88AQ3V6T2 CHI3L2-212ENST00000524472 1435 ntTSL 2 BASIC19.17■□□□□ 0.66
CCDC88AQ3V6T2 FSCN1-201ENST00000382361 2777 ntAPPRIS P1 TSL 1 (best) BASIC19.17■□□□□ 0.66
CCDC88AQ3V6T2 SLC22A6-204ENST00000458333 1521 ntTSL 1 (best) BASIC19.17■□□□□ 0.66
CCDC88AQ3V6T2 TOM1L1-221ENST00000575882 2507 ntAPPRIS P2 TSL 1 (best) BASIC19.17■□□□□ 0.66
CCDC88AQ3V6T2 IGLC7-201ENST00000390331 441 ntAPPRIS P1 BASIC19.17■□□□□ 0.66
CCDC88AQ3V6T2 PQLC3-202ENST00000402361 696 ntTSL 2 BASIC19.17■□□□□ 0.66
CCDC88AQ3V6T2 BLVRA-202ENST00000402924 1161 ntAPPRIS P1 TSL 2 BASIC19.17■□□□□ 0.66
CCDC88AQ3V6T2 AC060234.1-201ENST00000422966 474 ntTSL 3 BASIC19.17■□□□□ 0.66
CCDC88AQ3V6T2 KCNQ1DN-201ENST00000441418 1093 ntTSL 1 (best) BASIC19.17■□□□□ 0.66
CCDC88AQ3V6T2 AC078785.1-201ENST00000496389 734 ntTSL 3 BASIC19.17■□□□□ 0.66
CCDC88AQ3V6T2 CLRN2-201ENST00000511148 823 ntAPPRIS P1 TSL 1 (best) BASIC19.17■□□□□ 0.66
CCDC88AQ3V6T2 Metazoa_SRP.69-201ENST00000615730 281 ntBASIC19.17■□□□□ 0.66
CCDC88AQ3V6T2 SPATS2L-202ENST00000360760 2119 ntTSL 1 (best) BASIC19.17■□□□□ 0.66
CCDC88AQ3V6T2 TLK2-203ENST00000346027 3449 ntAPPRIS P3 TSL 1 (best) BASIC19.17■□□□□ 0.66
CCDC88AQ3V6T2 BAIAP2-219ENST00000575245 2229 ntTSL 5 BASIC19.17■□□□□ 0.66
CCDC88AQ3V6T2 JKAMP-215ENST00000616435 2338 ntTSL 5 BASIC19.17■□□□□ 0.66
CCDC88AQ3V6T2 HRK-201ENST00000257572 5789 ntAPPRIS P1 TSL 1 (best) BASIC19.17■□□□□ 0.66
CCDC88AQ3V6T2 AC068831.3-201ENST00000553321 1858 ntTSL 2 BASIC19.17■□□□□ 0.66
CCDC88AQ3V6T2 RAI14-201ENST00000265109 5092 ntAPPRIS P1 TSL 1 (best) BASIC19.17■□□□□ 0.66
CCDC88AQ3V6T2 AL354989.2-201ENST00000435838 1540 ntBASIC19.17■□□□□ 0.66
CCDC88AQ3V6T2 PTPN12-201ENST00000248594 3406 ntAPPRIS P1 TSL 1 (best) BASIC19.16■□□□□ 0.66
CCDC88AQ3V6T2 YIPF7-201ENST00000332990 937 ntTSL 5 BASIC19.16■□□□□ 0.66
CCDC88AQ3V6T2 DUSP23-202ENST00000368108 694 ntAPPRIS P1 TSL 1 (best) BASIC19.16■□□□□ 0.66
CCDC88AQ3V6T2 TCEAL1-203ENST00000372626 721 ntAPPRIS P1 TSL 2 BASIC19.16■□□□□ 0.66
CCDC88AQ3V6T2 GAD1-203ENST00000375272 1252 ntTSL 1 (best) BASIC19.16■□□□□ 0.66
CCDC88AQ3V6T2 IYD-204ENST00000392255 1180 ntTSL 1 (best) BASIC19.16■□□□□ 0.66
CCDC88AQ3V6T2 AC136604.1-201ENST00000418535 575 ntBASIC19.16■□□□□ 0.66
CCDC88AQ3V6T2 FHIT-208ENST00000492590 1081 ntAPPRIS P1 TSL 1 (best) BASIC19.16■□□□□ 0.66
CCDC88AQ3V6T2 ANAPC13-205ENST00000511751 896 ntAPPRIS P1 TSL 3 BASIC19.16■□□□□ 0.66
CCDC88AQ3V6T2 C17orf50-202ENST00000604830 477 ntTSL 3 BASIC19.16■□□□□ 0.66
CCDC88AQ3V6T2 BCL2L13-206ENST00000399782 1381 ntAPPRIS ALT2 TSL 1 (best) BASIC19.16■□□□□ 0.66
CCDC88AQ3V6T2 LEF1-216ENST00000510624 1472 ntTSL 2 BASIC19.16■□□□□ 0.66
CCDC88AQ3V6T2 HPS1-202ENST00000338546 1580 ntTSL 1 (best) BASIC19.16■□□□□ 0.66
CCDC88AQ3V6T2 KRT35-202ENST00000393989 1670 ntAPPRIS P1 TSL 5 BASIC19.16■□□□□ 0.66
CCDC88AQ3V6T2 FAM83A-201ENST00000276699 1858 ntTSL 1 (best) BASIC19.16■□□□□ 0.66
CCDC88AQ3V6T2 NAT9-210ENST00000580301 1860 ntTSL 1 (best) BASIC19.16■□□□□ 0.66
CCDC88AQ3V6T2 ZNF385A-212ENST00000551109 2369 ntTSL 5 BASIC19.16■□□□□ 0.66
CCDC88AQ3V6T2 STX2-201ENST00000261653 3331 ntAPPRIS ALT1 TSL 1 (best) BASIC19.16■□□□□ 0.66
CCDC88AQ3V6T2 DAND5-202ENST00000585548 1731 ntTSL 1 (best) BASIC19.16■□□□□ 0.66
CCDC88AQ3V6T2 CFLAR-205ENST00000342795 1613 ntTSL 5 BASIC19.16■□□□□ 0.66
CCDC88AQ3V6T2 NKILA-202ENST00000614771 2598 ntBASIC19.16■□□□□ 0.66
CCDC88AQ3V6T2 WDR6-202ENST00000415265 1883 ntTSL 2 BASIC19.16■□□□□ 0.66
CCDC88AQ3V6T2 PTGDR-201ENST00000306051 2942 ntAPPRIS P1 TSL 1 (best) BASIC19.16■□□□□ 0.66
CCDC88AQ3V6T2 PARVB-203ENST00000404989 1591 ntTSL 1 (best) BASIC19.16■□□□□ 0.66
CCDC88AQ3V6T2 CHN1-205ENST00000409900 2447 ntAPPRIS P1 TSL 1 (best) BASIC19.16■□□□□ 0.66
CCDC88AQ3V6T2 AWAT1-201ENST00000374521 1365 ntAPPRIS P1 TSL 1 (best) BASIC19.16■□□□□ 0.66
CCDC88AQ3V6T2 PRSS55-201ENST00000328655 1124 ntAPPRIS P1 TSL 1 (best) BASIC19.16■□□□□ 0.66
CCDC88AQ3V6T2 CDK2-202ENST00000354056 1260 ntTSL 1 (best) BASIC19.16■□□□□ 0.66
CCDC88AQ3V6T2 BEX2-201ENST00000372674 668 ntAPPRIS P1 TSL 2 BASIC19.16■□□□□ 0.66
CCDC88AQ3V6T2 UFM1-202ENST00000379649 846 ntTSL 4 BASIC19.16■□□□□ 0.66
CCDC88AQ3V6T2 HNRNPA1P32-201ENST00000396326 963 ntBASIC19.16■□□□□ 0.66
CCDC88AQ3V6T2 CYP46A4P-201ENST00000414953 267 ntBASIC19.16■□□□□ 0.66
CCDC88AQ3V6T2 AC007274.2-201ENST00000421675 662 ntBASIC19.16■□□□□ 0.66
CCDC88AQ3V6T2 GDAP1-202ENST00000434412 1228 ntTSL 1 (best) BASIC19.16■□□□□ 0.66
CCDC88AQ3V6T2 AC010745.3-201ENST00000439745 415 ntTSL 3 BASIC19.16■□□□□ 0.66
CCDC88AQ3V6T2 AGTRAP-212ENST00000510878 849 ntTSL 3 BASIC19.16■□□□□ 0.66
CCDC88AQ3V6T2 BHMT-206ENST00000524080 1207 ntTSL 2 BASIC19.16■□□□□ 0.66
CCDC88AQ3V6T2 AC025154.1-201ENST00000552806 560 ntTSL 5 BASIC19.16■□□□□ 0.66
CCDC88AQ3V6T2 AC091544.8-201ENST00000619490 361 ntBASIC19.16■□□□□ 0.66
CCDC88AQ3V6T2 TUBB3-215ENST00000625617 570 ntTSL 4 BASIC19.16■□□□□ 0.66
CCDC88AQ3V6T2 HIC1-207ENST00000619757 6711 ntTSL 1 (best) BASIC19.16■□□□□ 0.66
CCDC88AQ3V6T2 YTHDF3-215ENST00000621957 2387 ntAPPRIS ALT1 TSL 5 BASIC19.15■□□□□ 0.66
CCDC88AQ3V6T2 GDF7-201ENST00000272224 9749 ntAPPRIS P1 TSL 1 (best) BASIC19.15■□□□□ 0.66
CCDC88AQ3V6T2 SPATA33-210ENST00000611218 1546 ntAPPRIS ALT2 TSL 2 BASIC19.15■□□□□ 0.66
CCDC88AQ3V6T2 MEGF6-202ENST00000356575 5455 ntAPPRIS P1 TSL 1 (best) BASIC19.15■□□□□ 0.66
CCDC88AQ3V6T2 KCNQ5-212ENST00000628967 3527 ntTSL 2 BASIC19.15■□□□□ 0.66
CCDC88AQ3V6T2 ERP29-203ENST00000546477 1698 ntTSL 3 BASIC19.15■□□□□ 0.66
CCDC88AQ3V6T2 ASL-201ENST00000304874 2143 ntAPPRIS P1 TSL 1 (best) BASIC19.15■□□□□ 0.66
CCDC88AQ3V6T2 ATP6V0E2-212ENST00000611515 2565 ntTSL 1 (best) BASIC19.15■□□□□ 0.66
CCDC88AQ3V6T2 AC007381.1-201ENST00000457668 2005 ntTSL 5 BASIC19.15■□□□□ 0.66
CCDC88AQ3V6T2 N4BP2L1-210ENST00000613078 2032 ntTSL 5 BASIC19.15■□□□□ 0.66
CCDC88AQ3V6T2 VASN-201ENST00000304735 2806 ntAPPRIS P1 TSL 1 (best) BASIC19.15■□□□□ 0.66
CCDC88AQ3V6T2 FAM66C-209ENST00000544214 2623 ntTSL 1 (best) BASIC19.15■□□□□ 0.66
CCDC88AQ3V6T2 VPS26A-202ENST00000373382 3229 ntAPPRIS P1 TSL 5 BASIC19.15■□□□□ 0.66
CCDC88AQ3V6T2 TP53BP2-202ENST00000391878 4741 ntTSL 1 (best) BASIC19.15■□□□□ 0.66
CCDC88AQ3V6T2 DENND5B-201ENST00000354285 3132 ntTSL 1 (best) BASIC19.15■□□□□ 0.66
Retrieved 100 of 98,524 protein–RNA pairs in 26.1 ms