Protein–RNA interactions for Protein: P43681

CHRNA4, Neuronal acetylcholine receptor subunit alpha-4, humanhuman

Predictions only

Length 627 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
CHRNA4P43681 PDSS2-201ENST00000369031 1236 ntTSL 1 (best) BASIC16.08■□□□□ 0.16
CHRNA4P43681 FCN1-201ENST00000371806 1286 ntAPPRIS P1 TSL 1 (best) BASIC16.08■□□□□ 0.16
CHRNA4P43681 RNF186-201ENST00000375121 1250 ntAPPRIS P1 BASIC16.08■□□□□ 0.16
CHRNA4P43681 ASMT-201ENST00000381229 1087 ntAPPRIS P1 TSL 1 (best) BASIC16.08■□□□□ 0.16
CHRNA4P43681 GUK1-210ENST00000391865 990 ntAPPRIS ALT1 TSL 1 (best) BASIC16.08■□□□□ 0.16
CHRNA4P43681 SNHG17-203ENST00000417578 880 ntTSL 2 BASIC16.08■□□□□ 0.16
CHRNA4P43681 TMEM191A-202ENST00000419950 663 ntTSL 3 BASIC16.08■□□□□ 0.16
CHRNA4P43681 CDH23-AS1-201ENST00000428918 378 ntTSL 2 BASIC16.08■□□□□ 0.16
CHRNA4P43681 HIST3H2BA-201ENST00000436555 524 ntBASIC16.08■□□□□ 0.16
CHRNA4P43681 ZFAND2B-212ENST00000444522 1199 ntAPPRIS P1 TSL 5 BASIC16.08■□□□□ 0.16
CHRNA4P43681 IQCF3-204ENST00000446775 1241 ntAPPRIS P1 TSL 1 (best) BASIC16.08■□□□□ 0.16
CHRNA4P43681 MDH2-205ENST00000461263 648 ntTSL 2 BASIC16.08■□□□□ 0.16
CHRNA4P43681 DCUN1D5-209ENST00000531543 1030 ntTSL 5 BASIC16.08■□□□□ 0.16
CHRNA4P43681 NDRG4-247ENST00000568640 1281 ntTSL 2 BASIC16.08■□□□□ 0.16
CHRNA4P43681 RPS19-202ENST00000593863 526 ntAPPRIS P1 TSL 3 BASIC16.08■□□□□ 0.16
CHRNA4P43681 AL450472.2-201ENST00000603663 1156 ntBASIC16.08■□□□□ 0.16
CHRNA4P43681 WNT1-202ENST00000613114 1278 ntTSL 5 BASIC16.08■□□□□ 0.16
CHRNA4P43681 AQP12B-206ENST00000621682 1080 ntAPPRIS ALT2 TSL 5 BASIC16.08■□□□□ 0.16
CHRNA4P43681 TRIM29-221ENST00000627238 510 ntTSL 5 BASIC16.08■□□□□ 0.16
CHRNA4P43681 KRT18P28-201ENST00000453838 1332 ntBASIC16.08■□□□□ 0.16
CHRNA4P43681 SLC35F2-204ENST00000525815 3170 ntAPPRIS P2 TSL 1 (best) BASIC16.08■□□□□ 0.16
CHRNA4P43681 AL035456.1-201ENST00000456064 1369 ntBASIC16.08■□□□□ 0.16
CHRNA4P43681 OTOL1-201ENST00000327928 1434 ntAPPRIS P1 TSL 2 BASIC16.08■□□□□ 0.16
CHRNA4P43681 CCDC155-201ENST00000447857 2378 ntAPPRIS P2 TSL 1 (best) BASIC16.08■□□□□ 0.16
CHRNA4P43681 PDE1C-202ENST00000396182 2420 ntTSL 1 (best) BASIC16.08■□□□□ 0.16
CHRNA4P43681 ATG2A-203ENST00000421419 1481 ntTSL 1 (best) BASIC16.08■□□□□ 0.16
CHRNA4P43681 PCYOX1L-201ENST00000274569 2546 ntAPPRIS P1 TSL 2 BASIC16.08■□□□□ 0.16
CHRNA4P43681 PAX6-276ENST00000640684 1557 ntTSL 5 BASIC16.08■□□□□ 0.16
CHRNA4P43681 TLE3-202ENST00000440567 2657 ntTSL 2 BASIC16.08■□□□□ 0.16
CHRNA4P43681 B3GNT4-206ENST00000546192 2749 ntAPPRIS P1 TSL 2 BASIC16.08■□□□□ 0.16
CHRNA4P43681 ARHGEF28-211ENST00000512883 2936 ntTSL 2 BASIC16.08■□□□□ 0.16
CHRNA4P43681 PPIL6-207ENST00000521072 4128 ntAPPRIS P1 TSL 1 (best) BASIC16.08■□□□□ 0.16
CHRNA4P43681 TVP23C-210ENST00000584811 2989 ntTSL 1 (best) BASIC16.08■□□□□ 0.16
CHRNA4P43681 POLR1D-212ENST00000630983 1931 ntTSL 5 BASIC16.07■□□□□ 0.16
CHRNA4P43681 C7orf43-207ENST00000457641 2005 ntTSL 5 BASIC16.07■□□□□ 0.16
CHRNA4P43681 TBC1D17-202ENST00000535102 2025 ntTSL 2 BASIC16.07■□□□□ 0.16
CHRNA4P43681 ZNF767P-201ENST00000463567 3520 ntTSL 2 BASIC16.07■□□□□ 0.16
CHRNA4P43681 CDH7-203ENST00000536984 3766 ntTSL 1 (best) BASIC16.07■□□□□ 0.16
CHRNA4P43681 PLCB1-201ENST00000338037 7092 ntAPPRIS P1 TSL 1 (best) BASIC16.07■□□□□ 0.16
CHRNA4P43681 FUT7-201ENST00000314412 2584 ntAPPRIS P1 TSL 1 (best) BASIC16.07■□□□□ 0.16
CHRNA4P43681 ZNF385C-205ENST00000618554 2596 ntTSL 5 BASIC16.07■□□□□ 0.16
CHRNA4P43681 PHTF1-201ENST00000357783 2747 ntTSL 1 (best) BASIC16.07■□□□□ 0.16
CHRNA4P43681 ANKFY1-202ENST00000570535 6458 ntTSL 1 (best) BASIC16.07■□□□□ 0.16
CHRNA4P43681 UGGT2-202ENST00000376714 1233 ntTSL 1 (best) BASIC16.07■□□□□ 0.16
CHRNA4P43681 LINC01121-201ENST00000378479 1095 ntTSL 1 (best) BASIC16.07■□□□□ 0.16
CHRNA4P43681 CSHL1-204ENST00000392824 823 ntAPPRIS ALT1 TSL 1 (best) BASIC16.07■□□□□ 0.16
CHRNA4P43681 LBH-203ENST00000404397 543 ntTSL 4 BASIC16.07■□□□□ 0.16
CHRNA4P43681 TAS2R41-201ENST00000408916 924 ntAPPRIS P1 BASIC16.07■□□□□ 0.16
CHRNA4P43681 METTL21AP1-201ENST00000438852 635 ntBASIC16.07■□□□□ 0.16
CHRNA4P43681 C2orf88-205ENST00000443551 692 ntAPPRIS P1 TSL 1 (best) BASIC16.07■□□□□ 0.16
CHRNA4P43681 PHKG1P2-201ENST00000457537 863 ntBASIC16.07■□□□□ 0.16
CHRNA4P43681 MLF1-210ENST00000484955 1247 ntTSL 1 (best) BASIC16.07■□□□□ 0.16
CHRNA4P43681 HNRNPUP1-201ENST00000554987 333 ntBASIC16.07■□□□□ 0.16
CHRNA4P43681 AL079307.3-201ENST00000556114 283 ntBASIC16.07■□□□□ 0.16
CHRNA4P43681 CERNA1-201ENST00000559779 908 ntTSL 3 BASIC16.07■□□□□ 0.16
CHRNA4P43681 AC004408.1-201ENST00000579256 573 ntTSL 4 BASIC16.07■□□□□ 0.16
CHRNA4P43681 AC138207.8-201ENST00000579692 739 ntTSL 3 BASIC16.07■□□□□ 0.16
CHRNA4P43681 SPIB-207ENST00000597855 564 ntTSL 4 BASIC16.07■□□□□ 0.16
CHRNA4P43681 UGGT2-212ENST00000621375 1004 ntTSL 5 BASIC16.07■□□□□ 0.16
CHRNA4P43681 C8orf76-201ENST00000276704 1341 ntAPPRIS P1 TSL 1 (best) BASIC16.07■□□□□ 0.16
CHRNA4P43681 SCLT1-204ENST00000503215 1364 ntAPPRIS ALT2 TSL 1 (best) BASIC16.07■□□□□ 0.16
CHRNA4P43681 ABHD11-201ENST00000222800 1483 ntAPPRIS P3 TSL 1 (best) BASIC16.07■□□□□ 0.16
CHRNA4P43681 AC090286.1-201ENST00000354432 1489 ntTSL 1 (best) BASIC16.07■□□□□ 0.16
CHRNA4P43681 ABCA1-203ENST00000423487 1540 ntTSL 2 BASIC16.07■□□□□ 0.16
CHRNA4P43681 CRTC2-202ENST00000368630 1635 ntTSL 2 BASIC16.07■□□□□ 0.16
CHRNA4P43681 KLHDC2-206ENST00000554589 1641 ntTSL 5 BASIC16.07■□□□□ 0.16
CHRNA4P43681 CYB5R1-201ENST00000367249 1651 ntAPPRIS P1 TSL 1 (best) BASIC16.07■□□□□ 0.16
CHRNA4P43681 MMADHC-203ENST00000428879 1726 ntAPPRIS P1 TSL 2 BASIC16.07■□□□□ 0.16
CHRNA4P43681 OXCT1-AS1-201ENST00000508458 1731 ntTSL 3 BASIC16.07■□□□□ 0.16
CHRNA4P43681 BUD13-202ENST00000375445 1793 ntAPPRIS ALT2 TSL 1 (best) BASIC16.07■□□□□ 0.16
CHRNA4P43681 NFIC-202ENST00000395111 1755 ntTSL 2 BASIC16.07■□□□□ 0.16
CHRNA4P43681 DOK3-203ENST00000377112 1884 ntTSL 2 BASIC16.07■□□□□ 0.16
CHRNA4P43681 TKT-202ENST00000423516 2075 ntTSL 2 BASIC16.07■□□□□ 0.16
CHRNA4P43681 AP000704.1-201ENST00000637940 2182 ntTSL 5 BASIC16.07■□□□□ 0.16
CHRNA4P43681 FAM184B-201ENST00000265018 6622 ntAPPRIS P1 TSL 1 (best) BASIC16.07■□□□□ 0.16
CHRNA4P43681 HNRNPU-205ENST00000444376 6827 ntAPPRIS P3 TSL 1 (best) BASIC16.07■□□□□ 0.16
CHRNA4P43681 LTF-203ENST00000426532 2494 ntTSL 2 BASIC16.07■□□□□ 0.16
CHRNA4P43681 EPS15L1-207ENST00000594975 2489 ntTSL 2 BASIC16.07■□□□□ 0.16
CHRNA4P43681 ENDOV-213ENST00000520367 2680 ntTSL 2 BASIC16.07■□□□□ 0.16
CHRNA4P43681 NRCAM-217ENST00000613830 3025 ntTSL 1 (best) BASIC16.07■□□□□ 0.16
CHRNA4P43681 RUSC1-205ENST00000368354 3114 ntTSL 2 BASIC16.07■□□□□ 0.16
CHRNA4P43681 MCF2L-232ENST00000535094 3752 ntAPPRIS ALT2 TSL 2 BASIC16.07■□□□□ 0.16
CHRNA4P43681 C15orf61-201ENST00000342683 4253 ntAPPRIS P1 TSL 1 (best) BASIC16.07■□□□□ 0.16
CHRNA4P43681 CASP2-201ENST00000310447 4225 ntAPPRIS P1 TSL 1 (best) BASIC16.06■□□□□ 0.16
CHRNA4P43681 TMED7-TICAM2-202ENST00000333314 3453 ntTSL 2 BASIC16.06■□□□□ 0.16
CHRNA4P43681 ARFGAP2-202ENST00000426335 2937 ntTSL 2 BASIC16.06■□□□□ 0.16
CHRNA4P43681 CRAT-201ENST00000318080 2763 ntAPPRIS P1 TSL 1 (best) BASIC16.06■□□□□ 0.16
CHRNA4P43681 AC073347.1-201ENST00000421633 2643 ntBASIC16.06■□□□□ 0.16
CHRNA4P43681 FSD2-202ENST00000541889 2356 ntTSL 1 (best) BASIC16.06■□□□□ 0.16
CHRNA4P43681 RGS7-203ENST00000366564 2295 ntAPPRIS ALT2 TSL 1 (best) BASIC16.06■□□□□ 0.16
CHRNA4P43681 TOM1-206ENST00000425375 2252 ntTSL 2 BASIC16.06■□□□□ 0.16
CHRNA4P43681 ADAM15-208ENST00000447332 2146 ntAPPRIS ALT2 TSL 2 BASIC16.06■□□□□ 0.16
CHRNA4P43681 TSEN2-207ENST00000454502 1909 ntTSL 1 (best) BASIC16.06■□□□□ 0.16
CHRNA4P43681 NPM1-201ENST00000296930 1758 ntAPPRIS P1 TSL 1 (best) BASIC16.06■□□□□ 0.16
CHRNA4P43681 ALOX12-AS1-201ENST00000399540 1730 ntTSL 2 BASIC16.06■□□□□ 0.16
CHRNA4P43681 TRIM17-205ENST00000456946 1731 ntTSL 1 (best) BASIC16.06■□□□□ 0.16
CHRNA4P43681 LMNA-203ENST00000368297 1679 ntTSL 2 BASIC16.06■□□□□ 0.16
CHRNA4P43681 CBARP-204ENST00000590083 4261 ntAPPRIS P2 TSL 1 (best) BASIC16.06■□□□□ 0.16
CHRNA4P43681 GLMP-213ENST00000612353 1365 ntAPPRIS ALT2 TSL 5 BASIC16.06■□□□□ 0.16
CHRNA4P43681 GLMP-215ENST00000622703 1364 ntAPPRIS ALT2 TSL 2 BASIC16.06■□□□□ 0.16
Retrieved 100 of 98,524 protein–RNA pairs in 70.4 ms