Protein–RNA interactions for Protein: P43378

PTPN9, Tyrosine-protein phosphatase non-receptor type 9, humanhuman

Predictions only

Length 593 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
PTPN9P43378 ST6GALNAC6-216ENST00000622357 2396 ntAPPRIS ALT1 TSL 1 (best) BASIC16.53■□□□□ 0.24
PTPN9P43378 MEGF6-201ENST00000294599 4501 ntTSL 1 (best) BASIC16.53■□□□□ 0.24
PTPN9P43378 CORO6-201ENST00000345068 2603 ntAPPRIS P2 TSL 5 BASIC16.53■□□□□ 0.24
PTPN9P43378 UBE2D1-204ENST00000615793 2621 ntTSL 2 BASIC16.53■□□□□ 0.24
PTPN9P43378 TTBK2-208ENST00000622375 6891 ntAPPRIS ALT2 TSL 1 (best) BASIC16.53■□□□□ 0.24
PTPN9P43378 NPRL3-211ENST00000611875 2881 ntAPPRIS P1 TSL 5 BASIC16.53■□□□□ 0.24
PTPN9P43378 FAM222B-202ENST00000452648 2836 ntAPPRIS P1 TSL 2 BASIC16.53■□□□□ 0.24
PTPN9P43378 TMUB2-212ENST00000589785 1918 ntAPPRIS P3 TSL 2 BASIC16.53■□□□□ 0.24
PTPN9P43378 Z97205.2-201ENST00000564697 1639 ntBASIC16.53■□□□□ 0.24
PTPN9P43378 ETV2-204ENST00000403402 1335 ntAPPRIS P3 TSL 1 (best) BASIC16.53■□□□□ 0.24
PTPN9P43378 AC087499.5-201ENST00000452760 1342 ntBASIC16.53■□□□□ 0.24
PTPN9P43378 LYNX1-206ENST00000621401 4537 ntAPPRIS P1 TSL 1 (best) BASIC16.53■□□□□ 0.24
PTPN9P43378 CTPS2-201ENST00000359276 3629 ntAPPRIS P1 TSL 1 (best) BASIC16.53■□□□□ 0.24
PTPN9P43378 SLC29A1-209ENST00000427851 2171 ntAPPRIS P1 TSL 1 (best) BASIC16.53■□□□□ 0.24
PTPN9P43378 ZBTB11-AS1-201ENST00000609682 2743 ntBASIC16.53■□□□□ 0.24
PTPN9P43378 KIAA0391-202ENST00000321130 1589 ntTSL 3 BASIC16.53■□□□□ 0.24
PTPN9P43378 ZNF76-202ENST00000339411 2447 ntTSL 1 (best) BASIC16.53■□□□□ 0.24
PTPN9P43378 WLS-203ENST00000370971 700 ntTSL 1 (best) BASIC16.53■□□□□ 0.24
PTPN9P43378 TMEM239-202ENST00000380585 571 ntAPPRIS P1 TSL 1 (best) BASIC16.53■□□□□ 0.24
PTPN9P43378 RETN-202ENST00000381324 249 ntTSL 1 (best) BASIC16.53■□□□□ 0.24
PTPN9P43378 EVA1A-203ENST00000410010 696 ntAPPRIS ALT2 TSL 5 BASIC16.53■□□□□ 0.24
PTPN9P43378 HLA-DRB6-201ENST00000411500 1235 ntBASIC16.53■□□□□ 0.24
PTPN9P43378 TREML5P-201ENST00000421694 576 ntBASIC16.53■□□□□ 0.24
PTPN9P43378 AL160313.1-201ENST00000502101 1039 ntTSL 1 (best) BASIC16.53■□□□□ 0.24
PTPN9P43378 AC106872.10-201ENST00000503778 747 ntTSL 3 BASIC16.53■□□□□ 0.24
PTPN9P43378 AC009720.1-201ENST00000511867 586 ntTSL 2 BASIC16.53■□□□□ 0.24
PTPN9P43378 FAM92A-214ENST00000522324 1072 ntTSL 2 BASIC16.53■□□□□ 0.24
PTPN9P43378 TRMT112-206ENST00000544844 1106 ntAPPRIS P3 TSL 1 (best) BASIC16.53■□□□□ 0.24
PTPN9P43378 COQ7-202ENST00000544894 819 ntAPPRIS ALT2 TSL 1 (best) BASIC16.53■□□□□ 0.24
PTPN9P43378 NDUFA4L2-206ENST00000556732 883 ntTSL 3 BASIC16.53■□□□□ 0.24
PTPN9P43378 AC010336.2-201ENST00000564226 506 ntBASIC16.53■□□□□ 0.24
PTPN9P43378 AC009065.5-201ENST00000565937 596 ntTSL 3 BASIC16.53■□□□□ 0.24
PTPN9P43378 SELENOH-206ENST00000622257 1291 ntAPPRIS ALT1 TSL 5 BASIC16.53■□□□□ 0.24
PTPN9P43378 HOTAIRM1_1.1-201ENST00000622675 125 ntBASIC16.53■□□□□ 0.24
PTPN9P43378 RAB34-223ENST00000636154 730 ntTSL 2 BASIC16.53■□□□□ 0.24
PTPN9P43378 VPS26A-201ENST00000263559 2697 ntAPPRIS P1 TSL 1 (best) BASIC16.53■□□□□ 0.24
PTPN9P43378 ABCB7-201ENST00000253577 2377 ntAPPRIS P3 TSL 1 (best) BASIC16.53■□□□□ 0.24
PTPN9P43378 CRH-201ENST00000276571 1543 ntAPPRIS P1 TSL 1 (best) BASIC16.53■□□□□ 0.24
PTPN9P43378 CLIP4-201ENST00000320081 4293 ntAPPRIS P1 TSL 1 (best) BASIC16.53■□□□□ 0.24
PTPN9P43378 RNF167-211ENST00000575111 1757 ntAPPRIS P3 TSL 1 (best) BASIC16.53■□□□□ 0.24
PTPN9P43378 PRRT3-202ENST00000411976 1475 ntAPPRIS ALT2 TSL 1 (best) BASIC16.53■□□□□ 0.24
PTPN9P43378 CACFD1-207ENST00000542192 2754 ntTSL 2 BASIC16.53■□□□□ 0.24
PTPN9P43378 SOX30-202ENST00000311371 2716 ntAPPRIS ALT2 TSL 1 (best) BASIC16.53■□□□□ 0.24
PTPN9P43378 AL139130.1-201ENST00000451362 5586 ntTSL 1 (best) BASIC16.53■□□□□ 0.24
PTPN9P43378 DTD2-202ENST00000356180 1400 ntAPPRIS P1 TSL 1 (best) BASIC16.53■□□□□ 0.24
PTPN9P43378 ATP6V0E2-AS1-201ENST00000461019 2973 ntTSL 1 (best) BASIC16.53■□□□□ 0.24
PTPN9P43378 SLC35C2-202ENST00000317734 2175 ntTSL 2 BASIC16.53■□□□□ 0.24
PTPN9P43378 AP000704.1-201ENST00000637940 2182 ntTSL 5 BASIC16.53■□□□□ 0.24
PTPN9P43378 RAI2-206ENST00000545871 2421 ntAPPRIS P1 TSL 4 BASIC16.53■□□□□ 0.24
PTPN9P43378 CDK11B-204ENST00000407249 2677 ntTSL 1 (best) BASIC16.53■□□□□ 0.24
PTPN9P43378 C4orf50-202ENST00000531445 6860 ntAPPRIS P5 TSL 5 BASIC16.52■□□□□ 0.24
PTPN9P43378 SLC9A2-201ENST00000233969 5410 ntAPPRIS P1 TSL 1 (best) BASIC16.52■□□□□ 0.24
PTPN9P43378 SLC4A3-204ENST00000373760 4134 ntAPPRIS P1 TSL 5 BASIC16.52■□□□□ 0.24
PTPN9P43378 DHX30-205ENST00000445061 4065 ntAPPRIS P2 TSL 1 (best) BASIC16.52■□□□□ 0.24
PTPN9P43378 AC092850.2-201ENST00000623821 2697 ntBASIC16.52■□□□□ 0.24
PTPN9P43378 C11orf88-202ENST00000375618 712 ntAPPRIS ALT2 TSL 1 (best) BASIC16.52■□□□□ 0.24
PTPN9P43378 PNMT-202ENST00000394246 821 ntTSL 2 BASIC16.52■□□□□ 0.24
PTPN9P43378 HRAS-202ENST00000397594 1099 ntTSL 2 BASIC16.52■□□□□ 0.24
PTPN9P43378 MIR943-201ENST00000401286 94 ntBASIC16.52■□□□□ 0.24
PTPN9P43378 MIPEPP3-202ENST00000424756 347 ntTSL 3 BASIC16.52■□□□□ 0.24
PTPN9P43378 PIGZ-204ENST00000443835 675 ntTSL 4 BASIC16.52■□□□□ 0.24
PTPN9P43378 NECAP2-203ENST00000457722 935 ntTSL 2 BASIC16.52■□□□□ 0.24
PTPN9P43378 RN7SL618P-201ENST00000477850 296 ntBASIC16.52■□□□□ 0.24
PTPN9P43378 ZIC4-214ENST00000491672 925 ntTSL 4 BASIC16.52■□□□□ 0.24
PTPN9P43378 ZNF890P-202ENST00000530367 1156 ntBASIC16.52■□□□□ 0.24
PTPN9P43378 RAB30-AS1-207ENST00000533708 825 ntTSL 2 BASIC16.52■□□□□ 0.24
PTPN9P43378 DUX4L27-201ENST00000554796 1261 ntBASIC16.52■□□□□ 0.24
PTPN9P43378 AC116003.1-201ENST00000578340 536 ntTSL 3 BASIC16.52■□□□□ 0.24
PTPN9P43378 AC005746.1-201ENST00000589244 672 ntTSL 3 BASIC16.52■□□□□ 0.24
PTPN9P43378 MZF1-202ENST00000594108 1110 ntTSL 1 (best) BASIC16.52■□□□□ 0.24
PTPN9P43378 MALAT1-213ENST00000618227 593 ntTSL 3 BASIC16.52■□□□□ 0.24
PTPN9P43378 MON2-203ENST00000546600 6130 ntTSL 1 (best) BASIC16.52■□□□□ 0.24
PTPN9P43378 MUTYH-209ENST00000448481 1706 ntTSL 1 (best) BASIC16.52■□□□□ 0.24
PTPN9P43378 PHKA1-202ENST00000373539 4476 ntTSL 5 BASIC16.52■□□□□ 0.24
PTPN9P43378 GMPPB-201ENST00000308375 3217 ntTSL 2 BASIC16.52■□□□□ 0.23
PTPN9P43378 TIGD2-202ENST00000603357 3217 ntAPPRIS P1 TSL 4 BASIC16.52■□□□□ 0.23
PTPN9P43378 STEAP3-202ENST00000393107 1871 ntAPPRIS P1 TSL 1 (best) BASIC16.52■□□□□ 0.23
PTPN9P43378 NEFL-203ENST00000619417 1879 ntTSL 5 BASIC16.52■□□□□ 0.23
PTPN9P43378 RNF31-201ENST00000324103 3627 ntAPPRIS P1 TSL 1 (best) BASIC16.52■□□□□ 0.23
PTPN9P43378 ANKK1-201ENST00000303941 2543 ntAPPRIS P1 TSL 1 (best) BASIC16.52■□□□□ 0.23
PTPN9P43378 DGKZ-202ENST00000343674 3816 ntAPPRIS P3 TSL 2 BASIC16.52■□□□□ 0.23
PTPN9P43378 DIRC2-201ENST00000261038 3596 ntAPPRIS P1 TSL 1 (best) BASIC16.52■□□□□ 0.23
PTPN9P43378 PRKAR2B-201ENST00000265717 3745 ntAPPRIS P1 TSL 1 (best) BASIC16.52■□□□□ 0.23
PTPN9P43378 FUK-207ENST00000571514 3054 ntTSL 2 BASIC16.51■□□□□ 0.23
PTPN9P43378 DUSP26-203ENST00000523956 1373 ntAPPRIS P1 TSL 5 BASIC16.51■□□□□ 0.23
PTPN9P43378 AC092127.1-201ENST00000567093 3455 ntBASIC16.51■□□□□ 0.23
PTPN9P43378 PPFIA3-201ENST00000334186 4733 ntAPPRIS P1 TSL 1 (best) BASIC16.51■□□□□ 0.23
PTPN9P43378 OCIAD1-202ENST00000381473 1594 ntAPPRIS P1 TSL 1 (best) BASIC16.51■□□□□ 0.23
PTPN9P43378 MAGEA12-202ENST00000393869 1761 ntAPPRIS P1 TSL 2 BASIC16.51■□□□□ 0.23
PTPN9P43378 DXO-203ENST00000375356 1533 ntAPPRIS P1 TSL 1 (best) BASIC16.51■□□□□ 0.23
PTPN9P43378 TRPV4-204ENST00000536838 2514 ntTSL 1 (best) BASIC16.51■□□□□ 0.23
PTPN9P43378 SLC7A5-201ENST00000261622 4537 ntAPPRIS P1 TSL 1 (best) BASIC16.51■□□□□ 0.23
PTPN9P43378 MAP3K8-201ENST00000263056 3096 ntAPPRIS P1 TSL 1 (best) BASIC16.51■□□□□ 0.23
PTPN9P43378 SHISA2-201ENST00000319420 2860 ntAPPRIS P1 TSL 1 (best) BASIC16.51■□□□□ 0.23
PTPN9P43378 JRK-203ENST00000571961 2687 ntAPPRIS ALT2 TSL 1 (best) BASIC16.51■□□□□ 0.23
PTPN9P43378 CALCB-202ENST00000523376 2258 ntTSL 2 BASIC16.51■□□□□ 0.23
PTPN9P43378 RAB5C-201ENST00000346213 1671 ntAPPRIS P1 TSL 1 (best) BASIC16.51■□□□□ 0.23
PTPN9P43378 FBXO22-202ENST00000453211 1486 ntTSL 2 BASIC16.51■□□□□ 0.23
PTPN9P43378 NMU-201ENST00000264218 816 ntAPPRIS P1 TSL 1 (best) BASIC16.51■□□□□ 0.23
PTPN9P43378 HSD17B10-203ENST00000375304 916 ntTSL 1 (best) BASIC16.51■□□□□ 0.23
Retrieved 100 of 98,524 protein–RNA pairs in 48.2 ms