Protein–RNA interactions for Protein: P20585

MSH3, DNA mismatch repair protein Msh3, humanhuman

Predictions only

Length 1,137 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
MSH3P20585 GMIP-204ENST00000587238 2987 ntTSL 1 (best) BASIC15.92■□□□□ 0.14
MSH3P20585 INA-201ENST00000369849 3231 ntAPPRIS P1 TSL 1 (best) BASIC15.92■□□□□ 0.14
MSH3P20585 TCP10-201ENST00000366827 2250 ntAPPRIS ALT2 TSL 5 BASIC15.92■□□□□ 0.14
MSH3P20585 FES-207ENST00000444422 2266 ntTSL 1 (best) BASIC15.92■□□□□ 0.14
MSH3P20585 SNCAIP-202ENST00000261368 3745 ntAPPRIS P1 TSL 1 (best) BASIC15.92■□□□□ 0.14
MSH3P20585 SLCO5A1-203ENST00000524945 3725 ntTSL 2 BASIC15.92■□□□□ 0.14
MSH3P20585 KRT76-201ENST00000332411 2529 ntAPPRIS P1 TSL 1 (best) BASIC15.92■□□□□ 0.14
MSH3P20585 CPEB2-209ENST00000538197 6878 ntAPPRIS P4 TSL 5 BASIC15.92■□□□□ 0.14
MSH3P20585 CETN4P-206ENST00000642099 2168 ntBASIC15.92■□□□□ 0.14
MSH3P20585 CYP4F24P-201ENST00000586049 1580 ntBASIC15.92■□□□□ 0.14
MSH3P20585 ITPR3-201ENST00000374316 9870 ntAPPRIS P1 TSL 5 BASIC15.91■□□□□ 0.14
MSH3P20585 PDE3A-201ENST00000359062 7576 ntAPPRIS P1 TSL 1 (best) BASIC15.91■□□□□ 0.14
MSH3P20585 HDAC5-202ENST00000336057 5040 ntTSL 1 (best) BASIC15.91■□□□□ 0.14
MSH3P20585 ANKRD2-203ENST00000370655 1451 ntTSL 1 (best) BASIC15.91■□□□□ 0.14
MSH3P20585 ZSWIM8-201ENST00000398706 6062 ntTSL 2 BASIC15.91■□□□□ 0.14
MSH3P20585 SCLT1-204ENST00000503215 1364 ntAPPRIS ALT2 TSL 1 (best) BASIC15.91■□□□□ 0.14
MSH3P20585 PPP1R26-206ENST00000605660 4502 ntAPPRIS P1 BASIC15.91■□□□□ 0.14
MSH3P20585 ZNF799-201ENST00000419318 3036 ntTSL 2 BASIC15.91■□□□□ 0.14
MSH3P20585 SLC37A1-201ENST00000352133 3664 ntAPPRIS P1 TSL 1 (best) BASIC15.91■□□□□ 0.14
MSH3P20585 PEPD-202ENST00000397032 1754 ntTSL 2 BASIC15.91■□□□□ 0.14
MSH3P20585 Z98749.3-201ENST00000400206 1770 ntAPPRIS P1 TSL 2 BASIC15.91■□□□□ 0.14
MSH3P20585 PTPRO-202ENST00000348962 5061 ntTSL 1 (best) BASIC15.91■□□□□ 0.14
MSH3P20585 IKBIP-201ENST00000299157 3189 ntAPPRIS P4 TSL 1 (best) BASIC15.91■□□□□ 0.14
MSH3P20585 POLR1C-201ENST00000304004 1280 ntTSL 1 (best) BASIC15.91■□□□□ 0.14
MSH3P20585 ZUFSP-201ENST00000368573 1225 ntTSL 5 BASIC15.91■□□□□ 0.14
MSH3P20585 CLTA-203ENST00000396603 1090 ntTSL 1 (best) BASIC15.91■□□□□ 0.14
MSH3P20585 WRB-204ENST00000398753 699 ntTSL 3 BASIC15.91■□□□□ 0.14
MSH3P20585 IQCF3-201ENST00000437810 1270 ntAPPRIS P1 TSL 1 (best) BASIC15.91■□□□□ 0.14
MSH3P20585 ST7-OT4-203ENST00000466018 894 ntTSL 5 BASIC15.91■□□□□ 0.14
MSH3P20585 ZNF789-211ENST00000493485 556 ntTSL 4 BASIC15.91■□□□□ 0.14
MSH3P20585 CCDC74BP1-201ENST00000508880 1123 ntBASIC15.91■□□□□ 0.14
MSH3P20585 AC140878.1-201ENST00000565277 250 ntBASIC15.91■□□□□ 0.14
MSH3P20585 NDRG4-247ENST00000568640 1281 ntTSL 2 BASIC15.91■□□□□ 0.14
MSH3P20585 COQ4-205ENST00000609948 956 ntTSL 2 BASIC15.91■□□□□ 0.14
MSH3P20585 DBI-212ENST00000627305 620 ntTSL 1 (best) BASIC15.91■□□□□ 0.14
MSH3P20585 LILRA2-208ENST00000629481 661 ntTSL 2 BASIC15.91■□□□□ 0.14
MSH3P20585 STAT5B-201ENST00000293328 5103 ntAPPRIS P1 TSL 1 (best) BASIC15.91■□□□□ 0.14
MSH3P20585 HCFC1-201ENST00000310441 8869 ntAPPRIS P2 TSL 1 (best) BASIC15.91■□□□□ 0.14
MSH3P20585 MARCH2-208ENST00000602117 1667 ntAPPRIS P1 TSL 1 (best) BASIC15.91■□□□□ 0.14
MSH3P20585 PLAGL1-211ENST00000625622 3216 ntAPPRIS P1 TSL 2 BASIC15.91■□□□□ 0.14
MSH3P20585 NDUFA6-AS1-203ENST00000439129 2950 ntTSL 5 BASIC15.91■□□□□ 0.14
MSH3P20585 PTOV1-219ENST00000601638 1413 ntTSL 5 BASIC15.91■□□□□ 0.14
MSH3P20585 CD34-202ENST00000356522 2874 ntTSL 1 (best) BASIC15.91■□□□□ 0.14
MSH3P20585 HNRNPLL-212ENST00000608859 3035 ntTSL 5 BASIC15.91■□□□□ 0.14
MSH3P20585 DRG2-201ENST00000225729 1964 ntAPPRIS P1 TSL 1 (best) BASIC15.91■□□□□ 0.14
MSH3P20585 AC134407.2-201ENST00000625089 1978 ntBASIC15.91■□□□□ 0.14
MSH3P20585 GPRIN1-201ENST00000303991 4211 ntAPPRIS P1 TSL 1 (best) BASIC15.91■□□□□ 0.14
MSH3P20585 CASP2-201ENST00000310447 4225 ntAPPRIS P1 TSL 1 (best) BASIC15.91■□□□□ 0.14
MSH3P20585 ETV2-205ENST00000479824 1342 ntAPPRIS ALT2 TSL 1 (best) BASIC15.91■□□□□ 0.14
MSH3P20585 ANKRD24-206ENST00000600132 4026 ntAPPRIS P2 TSL 5 BASIC15.91■□□□□ 0.14
MSH3P20585 ATG13-216ENST00000530500 2030 ntTSL 2 BASIC15.9■□□□□ 0.14
MSH3P20585 PAUPAR-201ENST00000630360 2965 ntBASIC15.9■□□□□ 0.14
MSH3P20585 ATP2A3-205ENST00000397041 4675 ntAPPRIS P4 TSL 1 (best) BASIC15.9■□□□□ 0.14
MSH3P20585 SIN3B-201ENST00000248054 5037 ntAPPRIS ALT2 TSL 1 (best) BASIC15.9■□□□□ 0.14
MSH3P20585 RELT-201ENST00000064780 3535 ntAPPRIS P1 TSL 1 (best) BASIC15.9■□□□□ 0.14
MSH3P20585 Z99756.1-201ENST00000458463 1951 ntTSL 1 (best) BASIC15.9■□□□□ 0.14
MSH3P20585 ASMT-201ENST00000381229 1087 ntAPPRIS P1 TSL 1 (best) BASIC15.9■□□□□ 0.14
MSH3P20585 HFE-208ENST00000397022 1280 ntTSL 1 (best) BASIC15.9■□□□□ 0.14
MSH3P20585 TAS2R41-201ENST00000408916 924 ntAPPRIS P1 BASIC15.9■□□□□ 0.14
MSH3P20585 HFE-214ENST00000488199 781 ntTSL 1 (best) BASIC15.9■□□□□ 0.14
MSH3P20585 SATB1-217ENST00000493952 626 ntTSL 3 BASIC15.9■□□□□ 0.14
MSH3P20585 UBE2V2-201ENST00000517630 612 ntTSL 4 BASIC15.9■□□□□ 0.14
MSH3P20585 COMMD4-207ENST00000562789 746 ntTSL 2 BASIC15.9■□□□□ 0.14
MSH3P20585 FSTL3-202ENST00000588773 746 ntTSL 2 BASIC15.9■□□□□ 0.14
MSH3P20585 PDE4C-207ENST00000594617 4655 ntAPPRIS P3 TSL 1 (best) BASIC15.9■□□□□ 0.14
MSH3P20585 AC026803.2-201ENST00000599784 819 ntTSL 3 BASIC15.9■□□□□ 0.14
MSH3P20585 RAD23B-201ENST00000358015 4119 ntAPPRIS P1 TSL 1 (best) BASIC15.9■□□□□ 0.14
MSH3P20585 ZXDA-201ENST00000358697 4113 ntAPPRIS P1 BASIC15.9■□□□□ 0.14
MSH3P20585 NLGN4X-203ENST00000381093 5865 ntAPPRIS P2 TSL 2 BASIC15.9■□□□□ 0.14
MSH3P20585 CHSY3-201ENST00000305031 3850 ntAPPRIS P1 TSL 1 (best) BASIC15.9■□□□□ 0.14
MSH3P20585 CDC14C-201ENST00000428251 1719 ntBASIC15.9■□□□□ 0.14
MSH3P20585 KIAA1211-203ENST00000504228 4628 ntAPPRIS P2 TSL 5 BASIC15.9■□□□□ 0.14
MSH3P20585 NSUN2-201ENST00000264670 3303 ntAPPRIS P3 TSL 1 (best) BASIC15.9■□□□□ 0.14
MSH3P20585 YTHDF1-202ENST00000370339 3301 ntAPPRIS P1 TSL 1 (best) BASIC15.9■□□□□ 0.14
MSH3P20585 NACAD-202ENST00000490531 4780 ntAPPRIS P1 TSL 5 BASIC15.9■□□□□ 0.14
MSH3P20585 RHOC-201ENST00000285735 2199 ntAPPRIS P1 TSL 2 BASIC15.9■□□□□ 0.14
MSH3P20585 ADAMTS13-201ENST00000355699 4442 ntAPPRIS ALT2 TSL 1 (best) BASIC15.9■□□□□ 0.14
MSH3P20585 HACD3-206ENST00000565299 1465 ntTSL 5 BASIC15.9■□□□□ 0.14
MSH3P20585 SLC17A3-202ENST00000360657 1750 ntTSL 2 BASIC15.9■□□□□ 0.14
MSH3P20585 GPR89B-201ENST00000314163 1934 ntAPPRIS P1 TSL 1 (best) BASIC15.9■□□□□ 0.14
MSH3P20585 TTLL3-213ENST00000430793 2097 ntTSL 2 BASIC15.9■□□□□ 0.14
MSH3P20585 SLC29A1-205ENST00000371740 2219 ntAPPRIS P1 TSL 1 (best) BASIC15.9■□□□□ 0.14
MSH3P20585 MMP2-201ENST00000219070 3741 ntAPPRIS P1 TSL 1 (best) BASIC15.9■□□□□ 0.14
MSH3P20585 PDZD4-202ENST00000393758 3763 ntAPPRIS ALT2 TSL 1 (best) BASIC15.89■□□□□ 0.13
MSH3P20585 TYSND1-201ENST00000287078 3644 ntAPPRIS P1 TSL 1 (best) BASIC15.89■□□□□ 0.13
MSH3P20585 TMED7-TICAM2-201ENST00000282382 3491 ntAPPRIS P1 TSL 2 BASIC15.89■□□□□ 0.13
MSH3P20585 BBS5-201ENST00000295240 3475 ntAPPRIS P1 TSL 1 (best) BASIC15.89■□□□□ 0.13
MSH3P20585 WAC-203ENST00000354911 3042 ntAPPRIS P1 TSL 1 (best) BASIC15.89■□□□□ 0.13
MSH3P20585 FAM104A-202ENST00000405159 2865 ntTSL 1 (best) BASIC15.89■□□□□ 0.13
MSH3P20585 LATS1-202ENST00000392273 2567 ntTSL 1 (best) BASIC15.89■□□□□ 0.13
MSH3P20585 MFSD1-203ENST00000415822 2423 ntTSL 1 (best) BASIC15.89■□□□□ 0.13
MSH3P20585 LINC02447-202ENST00000501888 2146 ntBASIC15.89■□□□□ 0.13
MSH3P20585 MPP2-208ENST00000520305 2111 ntTSL 2 BASIC15.89■□□□□ 0.13
MSH3P20585 KRT8-215ENST00000552150 1687 ntTSL 1 (best) BASIC15.89■□□□□ 0.13
MSH3P20585 ADGRA1-AS1-201ENST00000366099 3236 ntBASIC15.89■□□□□ 0.13
MSH3P20585 AQP1-204ENST00000441328 2487 ntTSL 1 (best) BASIC15.89■□□□□ 0.13
MSH3P20585 CBFB-201ENST00000290858 3136 ntAPPRIS P3 TSL 1 (best) BASIC15.89■□□□□ 0.13
MSH3P20585 AC069224.1-201ENST00000566372 1715 ntBASIC15.89■□□□□ 0.13
MSH3P20585 BFSP2-201ENST00000302334 1558 ntAPPRIS P1 TSL 1 (best) BASIC15.89■□□□□ 0.13
MSH3P20585 TC2N-201ENST00000340892 4708 ntAPPRIS P1 TSL 1 (best) BASIC15.89■□□□□ 0.13
Retrieved 100 of 98,524 protein–RNA pairs in 35.1 ms