Protein–RNA interactions for Protein: H3BT56

CHKB-CPT1B, CHKB-CPT1B readthrough (NMD candidate) (Fragment), humanhuman

Predictions only

Length 60 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
CHKB-CPT1BH3BT56 MBD4-203ENST00000429544 2478 ntAPPRIS ALT2 TSL 1 (best) BASIC8.83□□□□□ -1
CHKB-CPT1BH3BT56 SGK3-206ENST00000520976 2483 ntTSL 2 BASIC8.83□□□□□ -1
CHKB-CPT1BH3BT56 PLPP3-201ENST00000371250 3292 ntAPPRIS P1 TSL 1 (best) BASIC8.83□□□□□ -1
CHKB-CPT1BH3BT56 LDB3-209ENST00000623056 2314 ntTSL 5 BASIC8.83□□□□□ -1
CHKB-CPT1BH3BT56 CALD1-204ENST00000417172 1915 ntTSL 5 BASIC8.83□□□□□ -1
CHKB-CPT1BH3BT56 AGER-205ENST00000375069 1538 ntTSL 1 (best) BASIC8.83□□□□□ -1
CHKB-CPT1BH3BT56 BEAN1-201ENST00000299694 2160 ntTSL 1 (best) BASIC8.83□□□□□ -1
CHKB-CPT1BH3BT56 MPP1-205ENST00000413259 2195 ntTSL 2 BASIC8.83□□□□□ -1
CHKB-CPT1BH3BT56 FGFBP1-201ENST00000382333 1359 ntAPPRIS P1 TSL 3 BASIC8.83□□□□□ -1
CHKB-CPT1BH3BT56 CEMP1-202ENST00000567119 1374 ntAPPRIS P2 BASIC8.83□□□□□ -1
CHKB-CPT1BH3BT56 BX324167.2-201ENST00000623717 3316 ntBASIC8.83□□□□□ -1
CHKB-CPT1BH3BT56 FTSJ1-202ENST00000348411 1892 ntAPPRIS P4 TSL 1 (best) BASIC8.83□□□□□ -1
CHKB-CPT1BH3BT56 STRA6-205ENST00000432245 1889 ntTSL 1 (best) BASIC8.83□□□□□ -1
CHKB-CPT1BH3BT56 CACNB3-202ENST00000536187 1872 ntTSL 2 BASIC8.83□□□□□ -1
CHKB-CPT1BH3BT56 PIK3C2B-202ENST00000367187 7686 ntAPPRIS P1 TSL 1 (best) BASIC8.83□□□□□ -1
CHKB-CPT1BH3BT56 POMT1-204ENST00000402686 3038 ntAPPRIS P1 TSL 1 (best) BASIC8.83□□□□□ -1
CHKB-CPT1BH3BT56 ARHGAP12-205ENST00000396144 5084 ntAPPRIS ALT1 TSL 1 (best) BASIC8.83□□□□□ -1
CHKB-CPT1BH3BT56 AC006030.1-201ENST00000451608 5059 ntAPPRIS P1 TSL 5 BASIC8.83□□□□□ -1
CHKB-CPT1BH3BT56 SLC5A10-201ENST00000317977 4436 ntTSL 1 (best) BASIC8.83□□□□□ -1
CHKB-CPT1BH3BT56 SLC22A1-203ENST00000457470 1452 ntTSL 5 BASIC8.83□□□□□ -1
CHKB-CPT1BH3BT56 MPP2-221ENST00000625880 4668 ntTSL 5 BASIC8.83□□□□□ -1
CHKB-CPT1BH3BT56 SLC8A3-205ENST00000394330 2622 ntTSL 1 (best) BASIC8.83□□□□□ -1
CHKB-CPT1BH3BT56 DNMT1-203ENST00000540357 4916 ntTSL 5 BASIC8.83□□□□□ -1
CHKB-CPT1BH3BT56 RHOV-201ENST00000220507 1705 ntAPPRIS P1 TSL 1 (best) BASIC8.83□□□□□ -1
CHKB-CPT1BH3BT56 PON2-201ENST00000222572 1745 ntAPPRIS P1 TSL 1 (best) BASIC8.83□□□□□ -1
CHKB-CPT1BH3BT56 IMP4-201ENST00000259239 1740 ntAPPRIS P1 TSL 1 (best) BASIC8.83□□□□□ -1
CHKB-CPT1BH3BT56 PLTP-203ENST00000372431 1743 ntAPPRIS P1 TSL 1 (best) BASIC8.83□□□□□ -1
CHKB-CPT1BH3BT56 TTC29-202ENST00000398886 1729 ntAPPRIS ALT2 TSL 5 BASIC8.83□□□□□ -1
CHKB-CPT1BH3BT56 PACSIN1-207ENST00000620693 4299 ntAPPRIS P1 TSL 1 (best) BASIC8.83□□□□□ -1
CHKB-CPT1BH3BT56 ICOSLG-204ENST00000407780 7080 ntAPPRIS P3 TSL 1 (best) BASIC8.82□□□□□ -1
CHKB-CPT1BH3BT56 CHEK2-204ENST00000382580 1971 ntAPPRIS ALT2 TSL 1 (best) BASIC8.82□□□□□ -1
CHKB-CPT1BH3BT56 HOXB6-203ENST00000484302 1960 ntAPPRIS P1 TSL 2 BASIC8.82□□□□□ -1
CHKB-CPT1BH3BT56 OSBPL5-203ENST00000389989 3619 ntTSL 1 (best) BASIC8.82□□□□□ -1
CHKB-CPT1BH3BT56 FBXO34-201ENST00000313833 3464 ntAPPRIS P1 TSL 1 (best) BASIC8.82□□□□□ -1
CHKB-CPT1BH3BT56 JMJD6-205ENST00000585429 1330 ntTSL 5 BASIC8.82□□□□□ -1
CHKB-CPT1BH3BT56 THNSL2-203ENST00000377254 1560 ntTSL 2 BASIC8.82□□□□□ -1
CHKB-CPT1BH3BT56 SLC25A24P1-201ENST00000411846 1569 ntTSL 5 BASIC8.82□□□□□ -1
CHKB-CPT1BH3BT56 ETNPPL-201ENST00000296486 2099 ntAPPRIS P3 TSL 1 (best) BASIC8.82□□□□□ -1
CHKB-CPT1BH3BT56 ACOT12-201ENST00000307624 2086 ntAPPRIS P1 TSL 1 (best) BASIC8.82□□□□□ -1
CHKB-CPT1BH3BT56 TVP23B-201ENST00000307767 2064 ntAPPRIS P2 TSL 1 (best) BASIC8.82□□□□□ -1
CHKB-CPT1BH3BT56 AEBP1-201ENST00000223357 4081 ntAPPRIS P1 TSL 1 (best) BASIC8.82□□□□□ -1
CHKB-CPT1BH3BT56 ABCA8-201ENST00000269080 5677 ntTSL 1 (best) BASIC8.82□□□□□ -1
CHKB-CPT1BH3BT56 KIRREL2-203ENST00000360202 2942 ntAPPRIS P4 TSL 1 (best) BASIC8.82□□□□□ -1
CHKB-CPT1BH3BT56 SLC52A3-201ENST00000217254 2654 ntAPPRIS P1 TSL 5 BASIC8.82□□□□□ -1
CHKB-CPT1BH3BT56 CLCN4-201ENST00000380829 2418 ntTSL 5 BASIC8.82□□□□□ -1
CHKB-CPT1BH3BT56 GPS1-202ENST00000320548 1949 ntTSL 2 BASIC8.82□□□□□ -1
CHKB-CPT1BH3BT56 ACBD6-201ENST00000367595 1670 ntAPPRIS P1 TSL 1 (best) BASIC8.82□□□□□ -1
CHKB-CPT1BH3BT56 AC132938.6-201ENST00000623828 1655 ntBASIC8.82□□□□□ -1
CHKB-CPT1BH3BT56 SNCA-203ENST00000394986 1420 ntAPPRIS P1 TSL 1 (best) BASIC8.82□□□□□ -1
CHKB-CPT1BH3BT56 DBNL-207ENST00000440166 1415 ntTSL 2 BASIC8.82□□□□□ -1
CHKB-CPT1BH3BT56 DCAF11-204ENST00000446197 4299 ntAPPRIS P1 TSL 1 (best) BASIC8.82□□□□□ -1
CHKB-CPT1BH3BT56 MPV17L2-204ENST00000599612 1408 ntAPPRIS P1 TSL 1 (best) BASIC8.82□□□□□ -1
CHKB-CPT1BH3BT56 CREBZF-204ENST00000527447 4037 ntAPPRIS P1 BASIC8.82□□□□□ -1
CHKB-CPT1BH3BT56 RNF26-201ENST00000311413 2787 ntAPPRIS P1 BASIC8.82□□□□□ -1
CHKB-CPT1BH3BT56 DIP2C-205ENST00000634311 4961 ntTSL 5 BASIC8.82□□□□□ -1
CHKB-CPT1BH3BT56 ZNF620-202ENST00000418905 2022 ntTSL 2 BASIC8.82□□□□□ -1
CHKB-CPT1BH3BT56 AC087521.1-201ENST00000501541 2045 ntTSL 2 BASIC8.82□□□□□ -1
CHKB-CPT1BH3BT56 SH3TC1-201ENST00000245105 4226 ntAPPRIS P1 TSL 2 BASIC8.82□□□□□ -1
CHKB-CPT1BH3BT56 LINC01833-203ENST00000437916 2880 ntTSL 3 BASIC8.82□□□□□ -1
CHKB-CPT1BH3BT56 FGFR3-203ENST00000352904 3733 ntTSL 1 (best) BASIC8.82□□□□□ -1
CHKB-CPT1BH3BT56 FBXL18-201ENST00000382368 3498 ntAPPRIS P2 TSL 5 BASIC8.82□□□□□ -1
CHKB-CPT1BH3BT56 IL17C-201ENST00000244241 1044 ntAPPRIS P1 TSL 1 (best) BASIC8.82□□□□□ -1
CHKB-CPT1BH3BT56 HCFC1R1-201ENST00000248089 965 ntTSL 1 (best) BASIC8.82□□□□□ -1
CHKB-CPT1BH3BT56 MLPH-201ENST00000264605 3823 ntAPPRIS P3 TSL 1 (best) BASIC8.82□□□□□ -1
CHKB-CPT1BH3BT56 WNT1-201ENST00000293549 1185 ntAPPRIS P1 TSL 1 (best) BASIC8.82□□□□□ -1
CHKB-CPT1BH3BT56 GNGT2-201ENST00000300406 889 ntAPPRIS P1 TSL 1 (best) BASIC8.82□□□□□ -1
CHKB-CPT1BH3BT56 PNOC-201ENST00000301908 1200 ntAPPRIS P1 TSL 1 (best) BASIC8.82□□□□□ -1
CHKB-CPT1BH3BT56 PFN3-201ENST00000358571 530 ntAPPRIS P1 BASIC8.82□□□□□ -1
CHKB-CPT1BH3BT56 FAM72A-203ENST00000367129 676 ntTSL 3 BASIC8.82□□□□□ -1
CHKB-CPT1BH3BT56 AC007952.1-201ENST00000399087 553 ntTSL 1 (best) BASIC8.82□□□□□ -1
CHKB-CPT1BH3BT56 AC007952.2-202ENST00000399093 556 ntTSL 1 (best) BASIC8.82□□□□□ -1
CHKB-CPT1BH3BT56 MAST4-206ENST00000406374 1066 ntTSL 1 (best) BASIC8.82□□□□□ -1
CHKB-CPT1BH3BT56 DERL1-203ENST00000419562 918 ntTSL 2 BASIC8.82□□□□□ -1
CHKB-CPT1BH3BT56 FAM72A-205ENST00000468509 629 ntTSL 5 BASIC8.82□□□□□ -1
CHKB-CPT1BH3BT56 PRKY-204ENST00000533551 1019 ntBASIC8.82□□□□□ -1
CHKB-CPT1BH3BT56 RHOF-204ENST00000537265 699 ntTSL 2 BASIC8.82□□□□□ -1
CHKB-CPT1BH3BT56 TESMIN-209ENST00000544963 1235 ntTSL 1 (best) BASIC8.82□□□□□ -1
CHKB-CPT1BH3BT56 RNASEK-202ENST00000548577 810 ntTSL 1 (best) BASIC8.82□□□□□ -1
CHKB-CPT1BH3BT56 C1QL1P1-201ENST00000568105 661 ntBASIC8.82□□□□□ -1
CHKB-CPT1BH3BT56 HERC2P5-204ENST00000569697 1214 ntTSL 2 BASIC8.82□□□□□ -1
CHKB-CPT1BH3BT56 HCFC1R1-207ENST00000574980 845 ntTSL 5 BASIC8.82□□□□□ -1
CHKB-CPT1BH3BT56 SUZ12P1-202ENST00000578070 929 ntTSL 5 BASIC8.82□□□□□ -1
CHKB-CPT1BH3BT56 OR10C1-204ENST00000622521 1039 ntBASIC8.82□□□□□ -1
CHKB-CPT1BH3BT56 AC106017.2-202ENST00000628484 536 ntTSL 1 (best) BASIC8.82□□□□□ -1
CHKB-CPT1BH3BT56 RNF144B-201ENST00000259939 5036 ntAPPRIS P1 TSL 1 (best) BASIC8.82□□□□□ -1
CHKB-CPT1BH3BT56 CCDC14-220ENST00000488653 4156 ntAPPRIS P3 TSL 1 (best) BASIC8.82□□□□□ -1
CHKB-CPT1BH3BT56 MBD4-201ENST00000249910 2470 ntAPPRIS P3 TSL 1 (best) BASIC8.82□□□□□ -1
CHKB-CPT1BH3BT56 PDCD6IP-206ENST00000457054 5962 ntAPPRIS ALT1 TSL 1 (best) BASIC8.82□□□□□ -1
CHKB-CPT1BH3BT56 MYO18A-223ENST00000628822 7501 ntAPPRIS ALT1 TSL 5 BASIC8.82□□□□□ -1
CHKB-CPT1BH3BT56 TNFRSF19-202ENST00000382258 1625 ntAPPRIS P4 TSL 1 (best) BASIC8.82□□□□□ -1
CHKB-CPT1BH3BT56 DMKN-213ENST00000447113 1611 ntAPPRIS ALT2 TSL 1 (best) BASIC8.82□□□□□ -1
CHKB-CPT1BH3BT56 FAM83A-205ENST00000522648 1604 ntTSL 1 (best) BASIC8.82□□□□□ -1
CHKB-CPT1BH3BT56 AP000253.1-201ENST00000449339 2233 ntTSL 3 BASIC8.82□□□□□ -1
CHKB-CPT1BH3BT56 GLB1L2-201ENST00000339772 3152 ntAPPRIS P1 TSL 5 BASIC8.82□□□□□ -1
CHKB-CPT1BH3BT56 SAMD15-201ENST00000216471 2564 ntAPPRIS P1 TSL 2 BASIC8.82□□□□□ -1
CHKB-CPT1BH3BT56 CRYBB2P1-202ENST00000382734 1364 ntTSL 1 (best) BASIC8.82□□□□□ -1
CHKB-CPT1BH3BT56 MKL1-211ENST00000618196 4248 ntAPPRIS P1 TSL 1 (best) BASIC8.82□□□□□ -1
CHKB-CPT1BH3BT56 TTLL3-213ENST00000430793 2097 ntTSL 2 BASIC8.82□□□□□ -1
CHKB-CPT1BH3BT56 SUPT20HL2-201ENST00000486479 2409 ntBASIC8.82□□□□□ -1
CHKB-CPT1BH3BT56 ARNTL-202ENST00000401424 2788 ntTSL 1 (best) BASIC8.82□□□□□ -1
Retrieved 100 of 98,524 protein–RNA pairs in 26.3 ms