Protein–RNA interactions for Protein: Q9Y5P4

COL4A3BP, Collagen type IV alpha-3-binding protein, humanhuman

Predictions only

Length 624 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
COL4A3BPQ9Y5P4 PHTF1-205ENST00000393357 3244 ntAPPRIS P1 TSL 1 (best) BASIC17.85■□□□□ 0.45
COL4A3BPQ9Y5P4 PRRT4-201ENST00000446477 3544 ntAPPRIS P1 TSL 5 BASIC17.85■□□□□ 0.45
COL4A3BPQ9Y5P4 RAB33B-201ENST00000305626 4562 ntAPPRIS P1 TSL 1 (best) BASIC17.85■□□□□ 0.45
COL4A3BPQ9Y5P4 ZNF397-201ENST00000261333 1419 ntTSL 1 (best) BASIC17.85■□□□□ 0.45
COL4A3BPQ9Y5P4 AFG3L2-201ENST00000269143 3247 ntAPPRIS P1 TSL 1 (best) BASIC17.85■□□□□ 0.45
COL4A3BPQ9Y5P4 CDH15-201ENST00000289746 2847 ntAPPRIS P1 TSL 1 (best) BASIC17.85■□□□□ 0.45
COL4A3BPQ9Y5P4 NR4A3-202ENST00000338488 2588 ntTSL 1 (best) BASIC17.85■□□□□ 0.45
COL4A3BPQ9Y5P4 SLC2A10-201ENST00000359271 4389 ntAPPRIS P1 TSL 1 (best) BASIC17.85■□□□□ 0.45
COL4A3BPQ9Y5P4 CENPM-206ENST00000407253 818 ntTSL 2 BASIC17.85■□□□□ 0.45
COL4A3BPQ9Y5P4 FAM221A-202ENST00000409192 888 ntTSL 1 (best) BASIC17.85■□□□□ 0.45
COL4A3BPQ9Y5P4 LINC01273-201ENST00000411453 685 ntTSL 2 BASIC17.85■□□□□ 0.45
COL4A3BPQ9Y5P4 AC008443.3-201ENST00000412295 549 ntTSL 4 BASIC17.85■□□□□ 0.45
COL4A3BPQ9Y5P4 ANXA11-203ENST00000422982 2534 ntAPPRIS P3 TSL 1 (best) BASIC17.85■□□□□ 0.45
COL4A3BPQ9Y5P4 REPIN1-202ENST00000425389 2876 ntAPPRIS P3 BASIC17.85■□□□□ 0.45
COL4A3BPQ9Y5P4 FAM207CP-201ENST00000443486 507 ntBASIC17.85■□□□□ 0.45
COL4A3BPQ9Y5P4 AC009477.1-201ENST00000452936 217 ntBASIC17.85■□□□□ 0.45
COL4A3BPQ9Y5P4 FXYD1-202ENST00000455515 594 ntAPPRIS P1 TSL 2 BASIC17.85■□□□□ 0.45
COL4A3BPQ9Y5P4 CCDC159-201ENST00000458408 1062 ntAPPRIS P1 TSL 5 BASIC17.85■□□□□ 0.45
COL4A3BPQ9Y5P4 ADCY7-203ENST00000537579 2090 ntTSL 5 BASIC17.85■□□□□ 0.45
COL4A3BPQ9Y5P4 CCDC85C-204ENST00000555822 930 ntTSL 5 BASIC17.85■□□□□ 0.45
COL4A3BPQ9Y5P4 LMX1B-204ENST00000561065 1300 ntAPPRIS P1 TSL 1 (best) BASIC17.85■□□□□ 0.45
COL4A3BPQ9Y5P4 AC138761.1-201ENST00000584393 385 ntBASIC17.85■□□□□ 0.45
COL4A3BPQ9Y5P4 AC087645.2-202ENST00000586583 643 ntTSL 4 BASIC17.85■□□□□ 0.45
COL4A3BPQ9Y5P4 MAP4K1-208ENST00000589130 2654 ntTSL 5 BASIC17.85■□□□□ 0.45
COL4A3BPQ9Y5P4 AC011477.6-201ENST00000604980 1927 ntBASIC17.85■□□□□ 0.45
COL4A3BPQ9Y5P4 GFY-202ENST00000610896 1557 ntAPPRIS P1 TSL 2 BASIC17.85■□□□□ 0.45
COL4A3BPQ9Y5P4 SEMA5B-211ENST00000616742 4933 ntAPPRIS P3 TSL 5 BASIC17.85■□□□□ 0.45
COL4A3BPQ9Y5P4 ADSL-220ENST00000636714 1734 ntAPPRIS ALT1 TSL 5 BASIC17.85■□□□□ 0.45
COL4A3BPQ9Y5P4 AL359644.1-202ENST00000637541 571 ntTSL 3 BASIC17.85■□□□□ 0.45
COL4A3BPQ9Y5P4 AC005906.2-217ENST00000639573 1711 ntTSL 5 BASIC17.85■□□□□ 0.45
COL4A3BPQ9Y5P4 TRIM24-202ENST00000415680 3799 ntAPPRIS ALT2 TSL 1 (best) BASIC17.85■□□□□ 0.45
COL4A3BPQ9Y5P4 EIF4G3-212ENST00000602326 6196 ntAPPRIS ALT2 TSL 1 (best) BASIC17.85■□□□□ 0.45
COL4A3BPQ9Y5P4 UNC13A-205ENST00000551649 6052 ntAPPRIS ALT2 TSL 5 BASIC17.85■□□□□ 0.45
COL4A3BPQ9Y5P4 SUCLA2-201ENST00000378654 2192 ntAPPRIS P1 TSL 1 (best) BASIC17.84■□□□□ 0.45
COL4A3BPQ9Y5P4 CDKN2B-AS1-208ENST00000580576 2175 ntTSL 1 (best) BASIC17.84■□□□□ 0.45
COL4A3BPQ9Y5P4 IQCF5-AS1-201ENST00000440723 2000 ntTSL 2 BASIC17.84■□□□□ 0.45
COL4A3BPQ9Y5P4 GFOD2-203ENST00000602377 1991 ntTSL 4 BASIC17.84■□□□□ 0.45
COL4A3BPQ9Y5P4 RAB40B-206ENST00000571995 3859 ntAPPRIS P1 TSL 1 (best) BASIC17.84■□□□□ 0.45
COL4A3BPQ9Y5P4 CLEC18B-201ENST00000339953 1865 ntAPPRIS P2 TSL 1 (best) BASIC17.84■□□□□ 0.45
COL4A3BPQ9Y5P4 CLEC18C-202ENST00000536907 1865 ntAPPRIS ALT2 TSL 5 BASIC17.84■□□□□ 0.45
COL4A3BPQ9Y5P4 KRT35-201ENST00000246639 1778 ntTSL 1 (best) BASIC17.84■□□□□ 0.45
COL4A3BPQ9Y5P4 SIGLEC7-202ENST00000317643 1754 ntAPPRIS P1 TSL 1 (best) BASIC17.84■□□□□ 0.45
COL4A3BPQ9Y5P4 PEPD-202ENST00000397032 1754 ntTSL 2 BASIC17.84■□□□□ 0.45
COL4A3BPQ9Y5P4 TMEM161A-206ENST00000587583 1654 ntTSL 5 BASIC17.84■□□□□ 0.45
COL4A3BPQ9Y5P4 YTHDF1-202ENST00000370339 3301 ntAPPRIS P1 TSL 1 (best) BASIC17.84■□□□□ 0.45
COL4A3BPQ9Y5P4 WDR81-204ENST00000419248 3315 ntTSL 2 BASIC17.84■□□□□ 0.45
COL4A3BPQ9Y5P4 LRP11-201ENST00000239367 3260 ntAPPRIS P1 TSL 1 (best) BASIC17.84■□□□□ 0.45
COL4A3BPQ9Y5P4 MSI2-204ENST00000442934 1624 ntTSL 2 BASIC17.84■□□□□ 0.45
COL4A3BPQ9Y5P4 PRKACG-201ENST00000377276 1585 ntAPPRIS P1 BASIC17.84■□□□□ 0.45
COL4A3BPQ9Y5P4 AC131160.1-201ENST00000639401 3058 ntAPPRIS P1 TSL 5 BASIC17.84■□□□□ 0.45
COL4A3BPQ9Y5P4 CLCNKB-204ENST00000619181 1544 ntTSL 5 BASIC17.84■□□□□ 0.45
COL4A3BPQ9Y5P4 FAM104A-202ENST00000405159 2865 ntTSL 1 (best) BASIC17.84■□□□□ 0.45
COL4A3BPQ9Y5P4 ETV2-205ENST00000479824 1342 ntAPPRIS ALT2 TSL 1 (best) BASIC17.84■□□□□ 0.45
COL4A3BPQ9Y5P4 PDSS2-201ENST00000369031 1236 ntTSL 1 (best) BASIC17.84■□□□□ 0.45
COL4A3BPQ9Y5P4 CIB3-202ENST00000379859 467 ntTSL 1 (best) BASIC17.84■□□□□ 0.45
COL4A3BPQ9Y5P4 PSMB8-203ENST00000395339 1025 ntTSL 3 BASIC17.84■□□□□ 0.45
COL4A3BPQ9Y5P4 AC004987.2-201ENST00000395959 1148 ntBASIC17.84■□□□□ 0.45
COL4A3BPQ9Y5P4 TCF20-203ENST00000404876 1058 ntTSL 3 BASIC17.84■□□□□ 0.45
COL4A3BPQ9Y5P4 SPDYE17-201ENST00000412399 783 ntBASIC17.84■□□□□ 0.45
COL4A3BPQ9Y5P4 OARD1-208ENST00000469104 704 ntTSL 2 BASIC17.84■□□□□ 0.45
COL4A3BPQ9Y5P4 TMEM63A-209ENST00000537914 1018 ntTSL 1 (best) BASIC17.84■□□□□ 0.45
COL4A3BPQ9Y5P4 OARD1-216ENST00000628419 1188 ntTSL 5 BASIC17.84■□□□□ 0.45
COL4A3BPQ9Y5P4 AL512625.1-201ENST00000305709 2541 ntTSL 1 (best) BASIC17.84■□□□□ 0.45
COL4A3BPQ9Y5P4 SNCAIP-202ENST00000261368 3745 ntAPPRIS P1 TSL 1 (best) BASIC17.84■□□□□ 0.45
COL4A3BPQ9Y5P4 LTF-203ENST00000426532 2494 ntTSL 2 BASIC17.84■□□□□ 0.45
COL4A3BPQ9Y5P4 PIK3R6-203ENST00000614407 2265 ntAPPRIS P1 TSL 1 (best) BASIC17.84■□□□□ 0.45
COL4A3BPQ9Y5P4 MPP3-201ENST00000398389 2182 ntAPPRIS P1 TSL 1 (best) BASIC17.84■□□□□ 0.45
COL4A3BPQ9Y5P4 MBD4-206ENST00000507208 2194 ntAPPRIS ALT2 TSL 2 BASIC17.84■□□□□ 0.45
COL4A3BPQ9Y5P4 HNRNPA3-201ENST00000392524 2067 ntAPPRIS P3 TSL 5 BASIC17.84■□□□□ 0.45
COL4A3BPQ9Y5P4 ITGA7-202ENST00000347027 4084 ntAPPRIS ALT2 TSL 5 BASIC17.84■□□□□ 0.45
COL4A3BPQ9Y5P4 ACE-202ENST00000290866 4959 ntAPPRIS P1 TSL 1 (best) BASIC17.84■□□□□ 0.45
COL4A3BPQ9Y5P4 AC134407.2-201ENST00000625089 1978 ntBASIC17.84■□□□□ 0.45
COL4A3BPQ9Y5P4 PKP4-AS1-203ENST00000629904 1951 ntTSL 5 BASIC17.84■□□□□ 0.45
COL4A3BPQ9Y5P4 H2AFY-202ENST00000312469 1859 ntTSL 5 BASIC17.84■□□□□ 0.45
COL4A3BPQ9Y5P4 TMTC2-203ENST00000548305 2682 ntTSL 1 (best) BASIC17.84■□□□□ 0.45
COL4A3BPQ9Y5P4 ERICH5-201ENST00000318528 1761 ntAPPRIS P3 TSL 1 (best) BASIC17.84■□□□□ 0.45
COL4A3BPQ9Y5P4 ELMO1-209ENST00000448602 2621 ntAPPRIS P1 TSL 1 (best) BASIC17.84■□□□□ 0.45
COL4A3BPQ9Y5P4 ADAMTS1-201ENST00000284984 5191 ntAPPRIS P1 TSL 1 (best) BASIC17.84■□□□□ 0.45
COL4A3BPQ9Y5P4 AL136982.4-201ENST00000437689 1740 ntBASIC17.84■□□□□ 0.45
COL4A3BPQ9Y5P4 TACR2-203ENST00000619173 1713 ntTSL 5 BASIC17.84■□□□□ 0.45
COL4A3BPQ9Y5P4 CELF3-201ENST00000290583 3246 ntAPPRIS P3 TSL 1 (best) BASIC17.83■□□□□ 0.45
COL4A3BPQ9Y5P4 ZNF213-206ENST00000574902 3208 ntAPPRIS P1 TSL 5 BASIC17.83■□□□□ 0.45
COL4A3BPQ9Y5P4 SCNN1A-221ENST00000543768 2361 ntAPPRIS ALT2 TSL 2 BASIC17.83■□□□□ 0.45
COL4A3BPQ9Y5P4 NIPA2-204ENST00000398014 3130 ntAPPRIS P1 TSL 5 BASIC17.83■□□□□ 0.45
COL4A3BPQ9Y5P4 RASGRP2-201ENST00000354024 2310 ntAPPRIS P2 TSL 1 (best) BASIC17.83■□□□□ 0.45
COL4A3BPQ9Y5P4 FBLIM1-206ENST00000441801 1543 ntTSL 1 (best) BASIC17.83■□□□□ 0.45
COL4A3BPQ9Y5P4 PTHLH-209ENST00000545234 1544 ntAPPRIS ALT1 TSL 5 BASIC17.83■□□□□ 0.45
COL4A3BPQ9Y5P4 ATP6V0E2-AS1-201ENST00000461019 2973 ntTSL 1 (best) BASIC17.83■□□□□ 0.45
COL4A3BPQ9Y5P4 CDIP1-206ENST00000563507 1463 ntTSL 2 BASIC17.83■□□□□ 0.45
COL4A3BPQ9Y5P4 RDM1-227ENST00000619876 1491 ntAPPRIS ALT2 TSL 2 BASIC17.83■□□□□ 0.45
COL4A3BPQ9Y5P4 ELOF1-203ENST00000586683 2154 ntTSL 2 BASIC17.83■□□□□ 0.45
COL4A3BPQ9Y5P4 PTOV1-219ENST00000601638 1413 ntTSL 5 BASIC17.83■□□□□ 0.45
COL4A3BPQ9Y5P4 SLCO2B1-205ENST00000525650 2121 ntTSL 2 BASIC17.83■□□□□ 0.45
COL4A3BPQ9Y5P4 KRT8P12-202ENST00000472924 1397 ntBASIC17.83■□□□□ 0.45
COL4A3BPQ9Y5P4 HEY1-208ENST00000523976 1325 ntTSL 2 BASIC17.83■□□□□ 0.44
COL4A3BPQ9Y5P4 RASA4-204ENST00000462172 2634 ntTSL 1 (best) BASIC17.83■□□□□ 0.44
COL4A3BPQ9Y5P4 EBI3-201ENST00000221847 1186 ntAPPRIS P1 TSL 1 (best) BASIC17.83■□□□□ 0.44
COL4A3BPQ9Y5P4 CRYGN-201ENST00000337323 754 ntAPPRIS P1 TSL 1 (best) BASIC17.83■□□□□ 0.44
COL4A3BPQ9Y5P4 FAM19A3-202ENST00000369630 1282 ntTSL 1 (best) BASIC17.83■□□□□ 0.44
COL4A3BPQ9Y5P4 PSMB9-207ENST00000374859 782 ntAPPRIS P1 TSL 1 (best) BASIC17.83■□□□□ 0.44
Retrieved 100 of 98,524 protein–RNA pairs in 30.3 ms