Protein–RNA interactions for Protein: Q9UBD9

CLCF1, Cardiotrophin-like cytokine factor 1, humanhuman

Predictions only

Length 225 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
CLCF1Q9UBD9 CRYZL1-202ENST00000361534 2224 ntTSL 1 (best) BASIC14.17□□□□□ -0.14
CLCF1Q9UBD9 PSMG3-AS1-201ENST00000437621 5701 ntTSL 1 (best) BASIC14.17□□□□□ -0.14
CLCF1Q9UBD9 TMEM229B-201ENST00000357461 4068 ntAPPRIS P1 TSL 2 BASIC14.17□□□□□ -0.14
CLCF1Q9UBD9 RHOF-201ENST00000267205 3009 ntAPPRIS P1 TSL 1 (best) BASIC14.17□□□□□ -0.14
CLCF1Q9UBD9 CCDC184-201ENST00000316554 2343 ntAPPRIS P1 BASIC14.17□□□□□ -0.14
CLCF1Q9UBD9 FIBP-201ENST00000338369 1261 ntTSL 1 (best) BASIC14.17□□□□□ -0.14
CLCF1Q9UBD9 SLC18B1-202ENST00000367918 472 ntTSL 5 BASIC14.17□□□□□ -0.14
CLCF1Q9UBD9 RPUSD3-204ENST00000424438 1005 ntTSL 2 BASIC14.17□□□□□ -0.14
CLCF1Q9UBD9 NME2P1-201ENST00000426182 414 ntBASIC14.17□□□□□ -0.14
CLCF1Q9UBD9 RPSAP31-202ENST00000445165 716 ntTSL 2 BASIC14.17□□□□□ -0.14
CLCF1Q9UBD9 AL451067.1-201ENST00000453111 394 ntTSL 2 BASIC14.17□□□□□ -0.14
CLCF1Q9UBD9 PHKG1P2-201ENST00000457537 863 ntBASIC14.17□□□□□ -0.14
CLCF1Q9UBD9 LINC01184-209ENST00000514573 609 ntTSL 3 BASIC14.17□□□□□ -0.14
CLCF1Q9UBD9 AP003068.1-201ENST00000528887 544 ntTSL 4 BASIC14.17□□□□□ -0.14
CLCF1Q9UBD9 IFITM2-204ENST00000533141 588 ntAPPRIS ALT2 TSL 4 BASIC14.17□□□□□ -0.14
CLCF1Q9UBD9 AC233702.7-201ENST00000536958 924 ntTSL 5 BASIC14.17□□□□□ -0.14
CLCF1Q9UBD9 TMEM258-204ENST00000537328 575 ntAPPRIS P1 TSL 1 (best) BASIC14.17□□□□□ -0.14
CLCF1Q9UBD9 HNRNPUP1-201ENST00000554987 333 ntBASIC14.17□□□□□ -0.14
CLCF1Q9UBD9 AP3S2-204ENST00000558011 738 ntTSL 3 BASIC14.17□□□□□ -0.14
CLCF1Q9UBD9 IGHV3OR16-13-201ENST00000562905 353 ntAPPRIS P1 BASIC14.17□□□□□ -0.14
CLCF1Q9UBD9 RRP7BP-205ENST00000566851 833 ntBASIC14.17□□□□□ -0.14
CLCF1Q9UBD9 AC007216.4-201ENST00000574364 562 ntTSL 4 BASIC14.17□□□□□ -0.14
CLCF1Q9UBD9 AP001033.1-201ENST00000584509 466 ntTSL 3 BASIC14.17□□□□□ -0.14
CLCF1Q9UBD9 AL450472.2-201ENST00000603663 1156 ntBASIC14.17□□□□□ -0.14
CLCF1Q9UBD9 TTLL3-213ENST00000430793 2097 ntTSL 2 BASIC14.17□□□□□ -0.14
CLCF1Q9UBD9 TPCN1-201ENST00000335509 5274 ntAPPRIS P1 TSL 1 (best) BASIC14.17□□□□□ -0.14
CLCF1Q9UBD9 MFSD4A-207ENST00000536357 1841 ntTSL 2 BASIC14.17□□□□□ -0.14
CLCF1Q9UBD9 DCST1-201ENST00000295542 2279 ntAPPRIS P3 TSL 2 BASIC14.17□□□□□ -0.14
CLCF1Q9UBD9 RNF168-201ENST00000318037 5347 ntAPPRIS P1 TSL 1 (best) BASIC14.17□□□□□ -0.14
CLCF1Q9UBD9 TOM1-204ENST00000411850 2390 ntAPPRIS ALT1 TSL 1 (best) BASIC14.17□□□□□ -0.14
CLCF1Q9UBD9 PAPOLB-201ENST00000404991 4262 ntAPPRIS P1 BASIC14.17□□□□□ -0.14
CLCF1Q9UBD9 PCDHGC5-202ENST00000610789 2763 ntAPPRIS ALT2 BASIC14.17□□□□□ -0.14
CLCF1Q9UBD9 ZNF496-201ENST00000294753 5336 ntAPPRIS P1 TSL 1 (best) BASIC14.17□□□□□ -0.14
CLCF1Q9UBD9 MMP17-206ENST00000535291 2301 ntAPPRIS ALT2 TSL 1 (best) BASIC14.16□□□□□ -0.14
CLCF1Q9UBD9 ZFP90-203ENST00000563169 2512 ntAPPRIS P1 TSL 1 (best) BASIC14.16□□□□□ -0.14
CLCF1Q9UBD9 SLC22A16-202ENST00000368919 1987 ntAPPRIS P2 TSL 1 (best) BASIC14.16□□□□□ -0.14
CLCF1Q9UBD9 CLMAT3-201ENST00000510576 1973 ntTSL 1 (best) BASIC14.16□□□□□ -0.14
CLCF1Q9UBD9 PSMD13-212ENST00000532097 1991 ntAPPRIS P1 TSL 1 (best) BASIC14.16□□□□□ -0.14
CLCF1Q9UBD9 LMF1-201ENST00000262301 2621 ntAPPRIS P1 TSL 5 BASIC14.16□□□□□ -0.14
CLCF1Q9UBD9 GABRB3-215ENST00000622697 5876 ntTSL 5 BASIC14.16□□□□□ -0.14
CLCF1Q9UBD9 CHTOP-203ENST00000368690 2165 ntAPPRIS ALT1 TSL 1 (best) BASIC14.16□□□□□ -0.14
CLCF1Q9UBD9 TRMT1-203ENST00000437766 2263 ntAPPRIS P3 TSL 1 (best) BASIC14.16□□□□□ -0.14
CLCF1Q9UBD9 RANBP9-201ENST00000011619 3113 ntAPPRIS P1 TSL 1 (best) BASIC14.16□□□□□ -0.14
CLCF1Q9UBD9 CYP2U1-202ENST00000508453 3125 ntTSL 1 (best) BASIC14.16□□□□□ -0.14
CLCF1Q9UBD9 HNRNPA0-201ENST00000314940 8726 ntAPPRIS P1 BASIC14.16□□□□□ -0.14
CLCF1Q9UBD9 UEVLD-203ENST00000379387 1848 ntTSL 2 BASIC14.16□□□□□ -0.14
CLCF1Q9UBD9 SLC22A3-201ENST00000275300 3348 ntAPPRIS P1 TSL 1 (best) BASIC14.16□□□□□ -0.14
CLCF1Q9UBD9 TRIM67-202ENST00000444294 9320 ntAPPRIS ALT1 TSL 5 BASIC14.16□□□□□ -0.14
CLCF1Q9UBD9 EPB41L3-203ENST00000400111 4259 ntTSL 5 BASIC14.16□□□□□ -0.14
CLCF1Q9UBD9 FAM120AOS-201ENST00000375412 2771 ntAPPRIS P3 TSL 1 (best) BASIC14.16□□□□□ -0.14
CLCF1Q9UBD9 LCN15-201ENST00000316144 762 ntAPPRIS P1 TSL 1 (best) BASIC14.16□□□□□ -0.14
CLCF1Q9UBD9 AC098614.1-201ENST00000368528 745 ntBASIC14.16□□□□□ -0.14
CLCF1Q9UBD9 LYPLA2-201ENST00000374501 1117 ntTSL 2 BASIC14.16□□□□□ -0.14
CLCF1Q9UBD9 HRAS-202ENST00000397594 1099 ntTSL 2 BASIC14.16□□□□□ -0.14
CLCF1Q9UBD9 DGCR5-201ENST00000399539 862 ntBASIC14.16□□□□□ -0.14
CLCF1Q9UBD9 RAC2-203ENST00000405484 842 ntAPPRIS ALT1 TSL 3 BASIC14.16□□□□□ -0.14
CLCF1Q9UBD9 AC136604.1-201ENST00000418535 575 ntBASIC14.16□□□□□ -0.14
CLCF1Q9UBD9 WBP2-203ENST00000433525 928 ntTSL 2 BASIC14.16□□□□□ -0.14
CLCF1Q9UBD9 AL161785.3-201ENST00000435157 395 ntTSL 3 BASIC14.16□□□□□ -0.14
CLCF1Q9UBD9 MOGAT3-203ENST00000440203 1219 ntAPPRIS ALT2 TSL 2 BASIC14.16□□□□□ -0.14
CLCF1Q9UBD9 AL109811.2-201ENST00000447600 487 ntTSL 3 BASIC14.16□□□□□ -0.14
CLCF1Q9UBD9 SNHG6-201ENST00000520348 648 ntTSL 2 BASIC14.16□□□□□ -0.14
CLCF1Q9UBD9 AC009163.1-201ENST00000530512 573 ntTSL 4 BASIC14.16□□□□□ -0.14
CLCF1Q9UBD9 AP001107.3-201ENST00000534065 544 ntTSL 4 BASIC14.16□□□□□ -0.14
CLCF1Q9UBD9 AP000721.1-201ENST00000535431 559 ntAPPRIS P1 TSL 5 BASIC14.16□□□□□ -0.14
CLCF1Q9UBD9 AC027575.2-201ENST00000585258 1295 ntTSL 1 (best) BASIC14.16□□□□□ -0.14
CLCF1Q9UBD9 FAM66A-202ENST00000602658 546 ntTSL 5 BASIC14.16□□□□□ -0.14
CLCF1Q9UBD9 AC008494.3-201ENST00000606615 944 ntBASIC14.16□□□□□ -0.14
CLCF1Q9UBD9 PDCD6-212ENST00000614778 1050 ntTSL 2 BASIC14.16□□□□□ -0.14
CLCF1Q9UBD9 IFI27-210ENST00000616764 716 ntAPPRIS P2 TSL 2 BASIC14.16□□□□□ -0.14
CLCF1Q9UBD9 MALAT1-213ENST00000618227 593 ntTSL 3 BASIC14.16□□□□□ -0.14
CLCF1Q9UBD9 IFI27-213ENST00000620066 719 ntAPPRIS ALT2 TSL 1 (best) BASIC14.16□□□□□ -0.14
CLCF1Q9UBD9 LZTS1-202ENST00000381569 5706 ntAPPRIS P1 TSL 5 BASIC14.16□□□□□ -0.14
CLCF1Q9UBD9 CALM3-212ENST00000599839 1355 ntTSL 1 (best) BASIC14.16□□□□□ -0.14
CLCF1Q9UBD9 LSMEM2-201ENST00000316436 1494 ntAPPRIS P1 TSL 1 (best) BASIC14.16□□□□□ -0.14
CLCF1Q9UBD9 PRKAG1-217ENST00000552212 1497 ntTSL 2 BASIC14.16□□□□□ -0.14
CLCF1Q9UBD9 WASHC2C-204ENST00000374362 4623 ntAPPRIS P3 TSL 1 (best) BASIC14.16□□□□□ -0.14
CLCF1Q9UBD9 POLG2-201ENST00000539111 1564 ntAPPRIS P1 TSL 1 (best) BASIC14.16□□□□□ -0.14
CLCF1Q9UBD9 NAGK-208ENST00000455662 1778 ntTSL 1 (best) BASIC14.16□□□□□ -0.14
CLCF1Q9UBD9 PRSS54-204ENST00000567164 1799 ntAPPRIS P1 TSL 1 (best) BASIC14.16□□□□□ -0.14
CLCF1Q9UBD9 NDRG2-211ENST00000397858 2054 ntAPPRIS P4 TSL 5 BASIC14.16□□□□□ -0.14
CLCF1Q9UBD9 MAP4K1-201ENST00000396857 2653 ntAPPRIS P1 TSL 5 BASIC14.16□□□□□ -0.14
CLCF1Q9UBD9 CU639417.3-201ENST00000624240 1404 ntBASIC14.15□□□□□ -0.14
CLCF1Q9UBD9 IDH3B-201ENST00000380843 1545 ntAPPRIS P4 TSL 1 (best) BASIC14.15□□□□□ -0.14
CLCF1Q9UBD9 SP100-205ENST00000409824 1802 ntTSL 5 BASIC14.15□□□□□ -0.14
CLCF1Q9UBD9 SYNDIG1L-202ENST00000554823 2420 ntAPPRIS P1 TSL 3 BASIC14.15□□□□□ -0.14
CLCF1Q9UBD9 PGAP3-201ENST00000300658 2737 ntAPPRIS P1 TSL 1 (best) BASIC14.15□□□□□ -0.14
CLCF1Q9UBD9 FGFR3-204ENST00000412135 3951 ntTSL 5 BASIC14.15□□□□□ -0.14
CLCF1Q9UBD9 CHAT-201ENST00000337653 2458 ntAPPRIS P4 TSL 1 (best) BASIC14.15□□□□□ -0.14
CLCF1Q9UBD9 YTHDF3-215ENST00000621957 2387 ntAPPRIS ALT1 TSL 5 BASIC14.15□□□□□ -0.14
CLCF1Q9UBD9 DNAJC21-202ENST00000382021 6208 ntTSL 2 BASIC14.15□□□□□ -0.14
CLCF1Q9UBD9 SH2B3-202ENST00000538307 2062 ntTSL 2 BASIC14.15□□□□□ -0.14
CLCF1Q9UBD9 PTPN11-201ENST00000351677 6101 ntAPPRIS P3 TSL 1 (best) BASIC14.15□□□□□ -0.14
CLCF1Q9UBD9 ACSM1-204ENST00000520010 1894 ntAPPRIS P1 TSL 1 (best) BASIC14.15□□□□□ -0.14
CLCF1Q9UBD9 AC068831.3-201ENST00000553321 1858 ntTSL 2 BASIC14.15□□□□□ -0.14
CLCF1Q9UBD9 IL18BP-204ENST00000393703 1788 ntAPPRIS P2 TSL 3 BASIC14.15□□□□□ -0.14
CLCF1Q9UBD9 EPHA8-201ENST00000166244 4943 ntAPPRIS P1 TSL 2 BASIC14.15□□□□□ -0.14
CLCF1Q9UBD9 AC138969.3-201ENST00000546612 1459 ntBASIC14.15□□□□□ -0.14
CLCF1Q9UBD9 AC138932.2-201ENST00000548268 1459 ntBASIC14.15□□□□□ -0.14
CLCF1Q9UBD9 AC126755.4-201ENST00000549796 1459 ntBASIC14.15□□□□□ -0.14
Retrieved 100 of 98,524 protein–RNA pairs in 90 ms