Protein–RNA interactions for Protein: Q9P232

CNTN3, Contactin-3, humanhuman

Predictions only

Length 1,028 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
CNTN3Q9P232 SRP9-204ENST00000619790 377 ntTSL 2 BASIC17.1■□□□□ 0.33
CNTN3Q9P232 SLA2-202ENST00000360672 2171 ntTSL 5 BASIC17.1■□□□□ 0.33
CNTN3Q9P232 GRB7-205ENST00000445327 2197 ntTSL 2 BASIC17.1■□□□□ 0.33
CNTN3Q9P232 ANKRD35-202ENST00000544626 3093 ntTSL 5 BASIC17.1■□□□□ 0.33
CNTN3Q9P232 ELF3-201ENST00000359651 4994 ntAPPRIS P1 TSL 1 (best) BASIC17.1■□□□□ 0.33
CNTN3Q9P232 ARHGAP27-208ENST00000528384 2296 ntTSL 1 (best) BASIC17.1■□□□□ 0.33
CNTN3Q9P232 NOTCH3-201ENST00000263388 8666 ntAPPRIS P1 TSL 1 (best) BASIC17.1■□□□□ 0.33
CNTN3Q9P232 BMPER-201ENST00000297161 5031 ntAPPRIS P1 TSL 1 (best) BASIC17.1■□□□□ 0.33
CNTN3Q9P232 KLC4-202ENST00000347162 2404 ntAPPRIS ALT2 TSL 1 (best) BASIC17.1■□□□□ 0.33
CNTN3Q9P232 KCNQ2-213ENST00000626839 9213 ntAPPRIS ALT1 TSL 1 (best) BASIC17.1■□□□□ 0.33
CNTN3Q9P232 ZYG11A-202ENST00000371532 3942 ntTSL 5 BASIC17.1■□□□□ 0.33
CNTN3Q9P232 DMRTC2-201ENST00000269945 1792 ntAPPRIS P1 TSL 1 (best) BASIC17.1■□□□□ 0.33
CNTN3Q9P232 SYNPO-201ENST00000307662 5374 ntAPPRIS P3 TSL 1 (best) BASIC17.1■□□□□ 0.33
CNTN3Q9P232 HSPB7-204ENST00000411503 2128 ntAPPRIS ALT1 TSL 1 (best) BASIC17.09■□□□□ 0.33
CNTN3Q9P232 HNF1A-215ENST00000615446 2344 ntTSL 5 BASIC17.09■□□□□ 0.33
CNTN3Q9P232 LCN15-201ENST00000316144 762 ntAPPRIS P1 TSL 1 (best) BASIC17.09■□□□□ 0.33
CNTN3Q9P232 NGF-201ENST00000369512 1047 ntAPPRIS P1 TSL 1 (best) BASIC17.09■□□□□ 0.33
CNTN3Q9P232 RAC2-203ENST00000405484 842 ntAPPRIS ALT1 TSL 3 BASIC17.09■□□□□ 0.33
CNTN3Q9P232 MAGEC1-202ENST00000406005 1084 ntAPPRIS ALT2 TSL 1 (best) BASIC17.09■□□□□ 0.33
CNTN3Q9P232 NME2P1-201ENST00000426182 414 ntBASIC17.09■□□□□ 0.33
CNTN3Q9P232 RPSAP31-202ENST00000445165 716 ntTSL 2 BASIC17.09■□□□□ 0.33
CNTN3Q9P232 AC008378.1-201ENST00000521251 496 ntTSL 5 BASIC17.09■□□□□ 0.33
CNTN3Q9P232 LACTB2-203ENST00000522447 1034 ntAPPRIS P1 TSL 2 BASIC17.09■□□□□ 0.33
CNTN3Q9P232 TMEM218-210ENST00000529609 734 ntTSL 3 BASIC17.09■□□□□ 0.33
CNTN3Q9P232 AC123567.1-201ENST00000548294 1261 ntBASIC17.09■□□□□ 0.33
CNTN3Q9P232 SLC8B1-206ENST00000549069 1058 ntTSL 2 BASIC17.09■□□□□ 0.33
CNTN3Q9P232 LINC02356-202ENST00000552663 314 ntTSL 3 BASIC17.09■□□□□ 0.33
CNTN3Q9P232 SPATA8-AS1-201ENST00000558722 465 ntTSL 3 BASIC17.09■□□□□ 0.33
CNTN3Q9P232 COMMD4-217ENST00000567195 677 ntTSL 2 BASIC17.09■□□□□ 0.33
CNTN3Q9P232 AC027575.2-201ENST00000585258 1295 ntTSL 1 (best) BASIC17.09■□□□□ 0.33
CNTN3Q9P232 AL035252.4-201ENST00000624174 288 ntBASIC17.09■□□□□ 0.33
CNTN3Q9P232 PIP4K2C-207ENST00000550465 1532 ntTSL 2 BASIC17.09■□□□□ 0.33
CNTN3Q9P232 C1orf43-202ENST00000362076 1551 ntTSL 1 (best) BASIC17.09■□□□□ 0.33
CNTN3Q9P232 RBM33-205ENST00000392759 1580 ntTSL 5 BASIC17.09■□□□□ 0.33
CNTN3Q9P232 PAX6-276ENST00000640684 1557 ntTSL 5 BASIC17.09■□□□□ 0.33
CNTN3Q9P232 CYP2R1-207ENST00000532378 1746 ntTSL 5 BASIC17.09■□□□□ 0.33
CNTN3Q9P232 MON1B-203ENST00000545553 1814 ntTSL 2 BASIC17.09■□□□□ 0.33
CNTN3Q9P232 WIZ-201ENST00000263381 5695 ntAPPRIS P2 TSL 2 BASIC17.09■□□□□ 0.33
CNTN3Q9P232 TMUB2-212ENST00000589785 1918 ntAPPRIS P3 TSL 2 BASIC17.09■□□□□ 0.33
CNTN3Q9P232 TTYH2-206ENST00000529107 2015 ntTSL 2 BASIC17.09■□□□□ 0.33
CNTN3Q9P232 AL603832.2-201ENST00000566195 2125 ntBASIC17.09■□□□□ 0.33
CNTN3Q9P232 NUCB1-202ENST00000407032 2158 ntAPPRIS P2 TSL 5 BASIC17.09■□□□□ 0.33
CNTN3Q9P232 FLII-221ENST00000578558 2377 ntTSL 5 BASIC17.09■□□□□ 0.33
CNTN3Q9P232 RAI2-206ENST00000545871 2421 ntAPPRIS P1 TSL 4 BASIC17.09■□□□□ 0.33
CNTN3Q9P232 PCSK4-201ENST00000300954 2661 ntAPPRIS P1 TSL 1 (best) BASIC17.09■□□□□ 0.33
CNTN3Q9P232 ZNF672-201ENST00000306562 2989 ntAPPRIS P1 TSL 1 (best) BASIC17.09■□□□□ 0.33
CNTN3Q9P232 FUK-207ENST00000571514 3054 ntTSL 2 BASIC17.09■□□□□ 0.33
CNTN3Q9P232 NSFL1C-201ENST00000216879 3568 ntAPPRIS P1 TSL 1 (best) BASIC17.09■□□□□ 0.33
CNTN3Q9P232 MAP3K6-201ENST00000357582 4136 ntAPPRIS P1 TSL 1 (best) BASIC17.09■□□□□ 0.33
CNTN3Q9P232 PHKA1-201ENST00000339490 6121 ntAPPRIS ALT1 TSL 1 (best) BASIC17.09■□□□□ 0.33
CNTN3Q9P232 ADCY6-202ENST00000357869 5748 ntTSL 2 BASIC17.08■□□□□ 0.33
CNTN3Q9P232 DENND6B-201ENST00000413817 4939 ntAPPRIS P1 TSL 1 (best) BASIC17.08■□□□□ 0.33
CNTN3Q9P232 LMNB2-201ENST00000325327 4671 ntAPPRIS P1 TSL 1 (best) BASIC17.08■□□□□ 0.33
CNTN3Q9P232 SEPT9-202ENST00000423034 3984 ntAPPRIS ALT1 TSL 1 (best) BASIC17.08■□□□□ 0.33
CNTN3Q9P232 RASAL3-201ENST00000343625 3293 ntAPPRIS P2 TSL 2 BASIC17.08■□□□□ 0.33
CNTN3Q9P232 SLC44A1-203ENST00000374724 3088 ntAPPRIS ALT1 TSL 5 BASIC17.08■□□□□ 0.33
CNTN3Q9P232 CARD14-202ENST00000570421 2607 ntTSL 1 (best) BASIC17.08■□□□□ 0.33
CNTN3Q9P232 ILF3-203ENST00000449870 6119 ntAPPRIS ALT2 TSL 1 (best) BASIC17.08■□□□□ 0.33
CNTN3Q9P232 CLCNKA-203ENST00000439316 1997 ntTSL 2 BASIC17.08■□□□□ 0.33
CNTN3Q9P232 SYNGAP1-202ENST00000418600 5828 ntTSL 5 BASIC17.08■□□□□ 0.33
CNTN3Q9P232 AC112504.1-201ENST00000623415 1841 ntBASIC17.08■□□□□ 0.33
CNTN3Q9P232 LINC00221-201ENST00000603633 1656 ntTSL 2 BASIC17.08■□□□□ 0.32
CNTN3Q9P232 GNA13-201ENST00000439174 4922 ntAPPRIS P1 TSL 1 (best) BASIC17.08■□□□□ 0.32
CNTN3Q9P232 CFLAR-205ENST00000342795 1613 ntTSL 5 BASIC17.08■□□□□ 0.32
CNTN3Q9P232 LINC00221-202ENST00000619530 1499 ntTSL 2 BASIC17.08■□□□□ 0.32
CNTN3Q9P232 CD1B-201ENST00000368168 1395 ntAPPRIS P1 TSL 1 (best) BASIC17.08■□□□□ 0.32
CNTN3Q9P232 APBA2-207ENST00000558402 4031 ntAPPRIS P1 TSL 5 BASIC17.08■□□□□ 0.32
CNTN3Q9P232 KLHL21-202ENST00000377663 6445 ntTSL 1 (best) BASIC17.08■□□□□ 0.32
CNTN3Q9P232 FIBP-201ENST00000338369 1261 ntTSL 1 (best) BASIC17.08■□□□□ 0.32
CNTN3Q9P232 WDR45-208ENST00000396681 1146 ntTSL 5 BASIC17.08■□□□□ 0.32
CNTN3Q9P232 RAB34-206ENST00000415040 1293 ntTSL 2 BASIC17.08■□□□□ 0.32
CNTN3Q9P232 AC098850.1-201ENST00000419919 790 ntBASIC17.08■□□□□ 0.32
CNTN3Q9P232 AC005034.1-201ENST00000426657 489 ntBASIC17.08■□□□□ 0.32
CNTN3Q9P232 MYCLP2-201ENST00000449268 967 ntBASIC17.08■□□□□ 0.32
CNTN3Q9P232 HHEX-203ENST00000492654 808 ntTSL 1 (best) BASIC17.08■□□□□ 0.32
CNTN3Q9P232 AP003068.1-201ENST00000528887 544 ntTSL 4 BASIC17.08■□□□□ 0.32
CNTN3Q9P232 AC004803.1-204ENST00000543290 512 ntTSL 4 BASIC17.08■□□□□ 0.32
CNTN3Q9P232 CR383656.12-201ENST00000549567 513 ntBASIC17.08■□□□□ 0.32
CNTN3Q9P232 AC243562.3-201ENST00000559866 1212 ntTSL 1 (best) BASIC17.08■□□□□ 0.32
CNTN3Q9P232 TMEM101-204ENST00000587529 965 ntTSL 2 BASIC17.08■□□□□ 0.32
CNTN3Q9P232 OR2T27-203ENST00000641652 1285 ntAPPRIS P1 BASIC17.08■□□□□ 0.32
CNTN3Q9P232 POU4F2-201ENST00000281321 3144 ntAPPRIS P1 TSL 1 (best) BASIC17.08■□□□□ 0.32
CNTN3Q9P232 BCAR1-206ENST00000535626 2894 ntTSL 2 BASIC17.08■□□□□ 0.32
CNTN3Q9P232 PBX3-207ENST00000447726 2789 ntTSL 1 (best) BASIC17.08■□□□□ 0.32
CNTN3Q9P232 LATS1-202ENST00000392273 2567 ntTSL 1 (best) BASIC17.08■□□□□ 0.32
CNTN3Q9P232 AEBP1-206ENST00000450684 2571 ntTSL 2 BASIC17.08■□□□□ 0.32
CNTN3Q9P232 AKTIP-202ENST00000394657 2426 ntAPPRIS P3 TSL 2 BASIC17.08■□□□□ 0.32
CNTN3Q9P232 RPS6KA3-201ENST00000379565 7918 ntAPPRIS P1 TSL 1 (best) BASIC17.08■□□□□ 0.32
CNTN3Q9P232 BANK1-207ENST00000508653 2115 ntTSL 1 (best) BASIC17.08■□□□□ 0.32
CNTN3Q9P232 POLR2A-201ENST00000572844 2083 ntAPPRIS P1 TSL 1 (best) BASIC17.08■□□□□ 0.32
CNTN3Q9P232 MEX3C-204ENST00000616921 3269 ntAPPRIS ALT2 TSL 1 (best) BASIC17.08■□□□□ 0.32
CNTN3Q9P232 PLEKHG4-205ENST00000450733 4480 ntAPPRIS ALT2 TSL 1 (best) BASIC17.08■□□□□ 0.32
CNTN3Q9P232 REPS1-201ENST00000258062 3161 ntAPPRIS P3 TSL 1 (best) BASIC17.08■□□□□ 0.32
CNTN3Q9P232 C16orf89-201ENST00000315997 1872 ntAPPRIS P3 TSL 1 (best) BASIC17.07■□□□□ 0.32
CNTN3Q9P232 SCUBE2-207ENST00000520467 3148 ntAPPRIS P1 TSL 2 BASIC17.07■□□□□ 0.32
CNTN3Q9P232 MAP4K4-202ENST00000324219 7526 ntTSL 5 BASIC17.07■□□□□ 0.32
CNTN3Q9P232 CCT7-216ENST00000540468 1674 ntTSL 2 BASIC17.07■□□□□ 0.32
CNTN3Q9P232 KCTD11-201ENST00000333751 2783 ntAPPRIS P1 BASIC17.07■□□□□ 0.32
CNTN3Q9P232 EPHX2-202ENST00000517536 1600 ntTSL 5 BASIC17.07■□□□□ 0.32
CNTN3Q9P232 MAPKAPK5-207ENST00000551404 1630 ntAPPRIS P4 TSL 5 BASIC17.07■□□□□ 0.32
Retrieved 100 of 98,524 protein–RNA pairs in 55.6 ms