Protein–RNA interactions for Protein: Q9BY43

CHMP4A, Charged multivesicular body protein 4a, humanhuman

Predictions only

Length 222 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
CHMP4AQ9BY43 KCNQ2-236ENST00000637193 2983 ntTSL 5 BASIC20.28■□□□□ 0.84
CHMP4AQ9BY43 H6PD-201ENST00000377403 9146 ntAPPRIS P1 TSL 1 (best) BASIC20.28■□□□□ 0.84
CHMP4AQ9BY43 ASAP3-212ENST00000618240 2226 ntTSL 5 BASIC20.28■□□□□ 0.84
CHMP4AQ9BY43 UBAP1L-201ENST00000502113 1381 ntAPPRIS P1 TSL 5 BASIC20.28■□□□□ 0.84
CHMP4AQ9BY43 CCDC184-201ENST00000316554 2343 ntAPPRIS P1 BASIC20.28■□□□□ 0.84
CHMP4AQ9BY43 LSMEM2-201ENST00000316436 1494 ntAPPRIS P1 TSL 1 (best) BASIC20.28■□□□□ 0.84
CHMP4AQ9BY43 TMTC2-201ENST00000321196 5681 ntAPPRIS P1 TSL 1 (best) BASIC20.28■□□□□ 0.84
CHMP4AQ9BY43 CDC25A-202ENST00000351231 3663 ntTSL 1 (best) BASIC20.28■□□□□ 0.84
CHMP4AQ9BY43 WSCD1-208ENST00000573634 1573 ntTSL 1 (best) BASIC20.28■□□□□ 0.84
CHMP4AQ9BY43 DMAC2-201ENST00000221943 1692 ntAPPRIS P1 TSL 2 BASIC20.28■□□□□ 0.84
CHMP4AQ9BY43 CCT7-216ENST00000540468 1674 ntTSL 2 BASIC20.28■□□□□ 0.84
CHMP4AQ9BY43 BUD13-202ENST00000375445 1793 ntAPPRIS ALT2 TSL 1 (best) BASIC20.28■□□□□ 0.84
CHMP4AQ9BY43 CDK4-201ENST00000257904 2076 ntAPPRIS P1 TSL 1 (best) BASIC20.28■□□□□ 0.84
CHMP4AQ9BY43 ASAH1-223ENST00000636171 2283 ntTSL 5 BASIC20.28■□□□□ 0.84
CHMP4AQ9BY43 NFATC2-205ENST00000609507 2662 ntAPPRIS ALT2 TSL 1 (best) BASIC20.28■□□□□ 0.84
CHMP4AQ9BY43 RIF1-204ENST00000430328 7992 ntAPPRIS ALT2 TSL 1 (best) BASIC20.28■□□□□ 0.84
CHMP4AQ9BY43 KDM5C-204ENST00000375401 6031 ntAPPRIS P3 TSL 1 (best) BASIC20.28■□□□□ 0.84
CHMP4AQ9BY43 RPS28-203ENST00000600659 1326 ntAPPRIS P1 TSL 1 (best) BASIC20.27■□□□□ 0.84
CHMP4AQ9BY43 LINC01978-202ENST00000574526 1540 ntTSL 1 (best) BASIC20.27■□□□□ 0.84
CHMP4AQ9BY43 KDM6A-212ENST00000543216 5655 ntTSL 1 (best) BASIC20.27■□□□□ 0.84
CHMP4AQ9BY43 DDOST-202ENST00000415136 2126 ntTSL 1 (best) BASIC20.27■□□□□ 0.84
CHMP4AQ9BY43 ZNF133-204ENST00000396026 2717 ntAPPRIS P3 TSL 3 BASIC20.27■□□□□ 0.84
CHMP4AQ9BY43 ZCCHC18-203ENST00000537356 2907 ntAPPRIS P1 TSL 5 BASIC20.27■□□□□ 0.84
CHMP4AQ9BY43 PDE4DIP-201ENST00000313431 5676 ntTSL 1 (best) BASIC20.27■□□□□ 0.84
CHMP4AQ9BY43 PANK4-201ENST00000378466 2677 ntAPPRIS P1 TSL 1 (best) BASIC20.27■□□□□ 0.84
CHMP4AQ9BY43 GNAL-202ENST00000334049 6535 ntTSL 1 (best) BASIC20.27■□□□□ 0.84
CHMP4AQ9BY43 PKP4-AS1-203ENST00000629904 1951 ntTSL 5 BASIC20.27■□□□□ 0.84
CHMP4AQ9BY43 C17orf74-201ENST00000333870 1651 ntAPPRIS P1 TSL 1 (best) BASIC20.27■□□□□ 0.84
CHMP4AQ9BY43 AP001056.1-201ENST00000411956 821 ntTSL 3 BASIC20.27■□□□□ 0.84
CHMP4AQ9BY43 GNAQP1-201ENST00000444815 1067 ntBASIC20.27■□□□□ 0.84
CHMP4AQ9BY43 CCDC25-209ENST00000522915 785 ntTSL 3 BASIC20.27■□□□□ 0.84
CHMP4AQ9BY43 AC079296.1-201ENST00000531592 560 ntTSL 3 BASIC20.27■□□□□ 0.84
CHMP4AQ9BY43 AC036164.1-201ENST00000570544 333 ntBASIC20.27■□□□□ 0.84
CHMP4AQ9BY43 AP001033.1-201ENST00000584509 466 ntTSL 3 BASIC20.27■□□□□ 0.84
CHMP4AQ9BY43 Metazoa_SRP.112-201ENST00000613101 279 ntBASIC20.27■□□□□ 0.84
CHMP4AQ9BY43 RPP40-207ENST00000618533 1056 ntTSL 5 BASIC20.27■□□□□ 0.84
CHMP4AQ9BY43 OR2T27-203ENST00000641652 1285 ntAPPRIS P1 BASIC20.27■□□□□ 0.84
CHMP4AQ9BY43 ZNF514-201ENST00000295208 3011 ntAPPRIS P1 TSL 1 (best) BASIC20.27■□□□□ 0.84
CHMP4AQ9BY43 PTPN13-204ENST00000436978 8573 ntAPPRIS P4 TSL 5 BASIC20.27■□□□□ 0.84
CHMP4AQ9BY43 AC133785.1-201ENST00000429282 2824 ntTSL 2 BASIC20.27■□□□□ 0.84
CHMP4AQ9BY43 ZNF133-205ENST00000401790 2642 ntAPPRIS ALT2 TSL 2 BASIC20.27■□□□□ 0.84
CHMP4AQ9BY43 ZNF133-206ENST00000402618 2622 ntTSL 2 BASIC20.27■□□□□ 0.84
CHMP4AQ9BY43 ST6GALNAC6-202ENST00000373141 2424 ntAPPRIS ALT1 TSL 2 BASIC20.27■□□□□ 0.84
CHMP4AQ9BY43 SIK3-205ENST00000446921 3858 ntAPPRIS ALT2 TSL 1 (best) BASIC20.27■□□□□ 0.84
CHMP4AQ9BY43 ASAH1-254ENST00000637636 2218 ntAPPRIS ALT1 TSL 5 BASIC20.27■□□□□ 0.84
CHMP4AQ9BY43 AL513523.2-202ENST00000427283 2040 ntBASIC20.27■□□□□ 0.84
CHMP4AQ9BY43 C11orf49-204ENST00000395460 1916 ntTSL 1 (best) BASIC20.27■□□□□ 0.84
CHMP4AQ9BY43 ARID5A-203ENST00000454558 3079 ntTSL 1 (best) BASIC20.27■□□□□ 0.84
CHMP4AQ9BY43 CYP2R1-207ENST00000532378 1746 ntTSL 5 BASIC20.27■□□□□ 0.83
CHMP4AQ9BY43 DIDO1-207ENST00000395343 8477 ntAPPRIS ALT2 TSL 1 (best) BASIC20.27■□□□□ 0.83
CHMP4AQ9BY43 ATG10-202ENST00000355178 1438 ntTSL 2 BASIC20.27■□□□□ 0.83
CHMP4AQ9BY43 FLII-221ENST00000578558 2377 ntTSL 5 BASIC20.27■□□□□ 0.83
CHMP4AQ9BY43 IDH3G-212ENST00000619865 1339 ntTSL 5 BASIC20.27■□□□□ 0.83
CHMP4AQ9BY43 RHOC-201ENST00000285735 2199 ntAPPRIS P1 TSL 2 BASIC20.27■□□□□ 0.83
CHMP4AQ9BY43 CD24-204ENST00000619133 2513 ntAPPRIS P3 TSL 2 BASIC20.26■□□□□ 0.83
CHMP4AQ9BY43 GLG1-201ENST00000205061 8261 ntAPPRIS P3 TSL 1 (best) BASIC20.26■□□□□ 0.83
CHMP4AQ9BY43 PLCB1-203ENST00000378641 7323 ntTSL 1 (best) BASIC20.26■□□□□ 0.83
CHMP4AQ9BY43 C1RL-210ENST00000544702 1569 ntTSL 1 (best) BASIC20.26■□□□□ 0.83
CHMP4AQ9BY43 C10orf10-201ENST00000298295 2120 ntAPPRIS P1 TSL 1 (best) BASIC20.26■□□□□ 0.83
CHMP4AQ9BY43 HSPB7-204ENST00000411503 2128 ntAPPRIS ALT1 TSL 1 (best) BASIC20.26■□□□□ 0.83
CHMP4AQ9BY43 UVSSA-208ENST00000511563 1494 ntAPPRIS ALT2 TSL 2 BASIC20.26■□□□□ 0.83
CHMP4AQ9BY43 SLC3A2-208ENST00000536981 1486 ntTSL 2 BASIC20.26■□□□□ 0.83
CHMP4AQ9BY43 LRRC47-201ENST00000378251 4310 ntAPPRIS P1 TSL 1 (best) BASIC20.26■□□□□ 0.83
CHMP4AQ9BY43 ZFP41-201ENST00000330701 4797 ntAPPRIS P1 TSL 2 BASIC20.26■□□□□ 0.83
CHMP4AQ9BY43 TSEN2-207ENST00000454502 1909 ntTSL 1 (best) BASIC20.26■□□□□ 0.83
CHMP4AQ9BY43 RAB8A-201ENST00000300935 2827 ntAPPRIS P1 TSL 1 (best) BASIC20.26■□□□□ 0.83
CHMP4AQ9BY43 AIP-201ENST00000279146 1221 ntAPPRIS P1 TSL 1 (best) BASIC20.26■□□□□ 0.83
CHMP4AQ9BY43 COPE-202ENST00000349893 948 ntTSL 2 BASIC20.26■□□□□ 0.83
CHMP4AQ9BY43 AC074338.1-201ENST00000416825 156 ntBASIC20.26■□□□□ 0.83
CHMP4AQ9BY43 FYCO1-203ENST00000438446 1072 ntTSL 5 BASIC20.26■□□□□ 0.83
CHMP4AQ9BY43 LINC00473-201ENST00000444465 798 ntTSL 3 BASIC20.26■□□□□ 0.83
CHMP4AQ9BY43 HMGB2-203ENST00000446922 1175 ntAPPRIS P1 TSL 1 (best) BASIC20.26■□□□□ 0.83
CHMP4AQ9BY43 GNG4-205ENST00000484517 684 ntAPPRIS P1 TSL 2 BASIC20.26■□□□□ 0.83
CHMP4AQ9BY43 LINC02242-201ENST00000507298 641 ntTSL 5 BASIC20.26■□□□□ 0.83
CHMP4AQ9BY43 SPDYE18-201ENST00000510091 1050 ntBASIC20.26■□□□□ 0.83
CHMP4AQ9BY43 PXN-AS1-204ENST00000542265 854 ntTSL 2 BASIC20.26■□□□□ 0.83
CHMP4AQ9BY43 CR383656.12-201ENST00000549567 513 ntBASIC20.26■□□□□ 0.83
CHMP4AQ9BY43 AL391261.2-201ENST00000554907 773 ntTSL 2 BASIC20.26■□□□□ 0.83
CHMP4AQ9BY43 AC023310.3-201ENST00000557027 670 ntBASIC20.26■□□□□ 0.83
CHMP4AQ9BY43 AC100756.1-201ENST00000562736 682 ntBASIC20.26■□□□□ 0.83
CHMP4AQ9BY43 AC138749.3-201ENST00000567691 622 ntBASIC20.26■□□□□ 0.83
CHMP4AQ9BY43 LINC01115-203ENST00000606068 577 ntBASIC20.26■□□□□ 0.83
CHMP4AQ9BY43 AC116165.1-201ENST00000611806 668 ntBASIC20.26■□□□□ 0.83
CHMP4AQ9BY43 AC025048.6-201ENST00000634326 1161 ntBASIC20.26■□□□□ 0.83
CHMP4AQ9BY43 MTA1-202ENST00000405646 2709 ntAPPRIS ALT2 TSL 5 BASIC20.26■□□□□ 0.83
CHMP4AQ9BY43 FAM215B-201ENST00000458392 2183 ntTSL 1 (best) BASIC20.26■□□□□ 0.83
CHMP4AQ9BY43 ZBTB10-202ENST00000426744 9878 ntAPPRIS ALT2 TSL 5 BASIC20.26■□□□□ 0.83
CHMP4AQ9BY43 MINDY1-202ENST00000361738 1961 ntTSL 2 BASIC20.26■□□□□ 0.83
CHMP4AQ9BY43 C16orf89-201ENST00000315997 1872 ntAPPRIS P3 TSL 1 (best) BASIC20.26■□□□□ 0.83
CHMP4AQ9BY43 CACNA1G-202ENST00000354983 8138 ntAPPRIS ALT2 TSL 5 BASIC20.26■□□□□ 0.83
CHMP4AQ9BY43 LRRFIP1P1-201ENST00000498774 2246 ntBASIC20.26■□□□□ 0.83
CHMP4AQ9BY43 MCM4-201ENST00000262105 4183 ntAPPRIS P1 TSL 1 (best) BASIC20.26■□□□□ 0.83
CHMP4AQ9BY43 BANK1-207ENST00000508653 2115 ntTSL 1 (best) BASIC20.26■□□□□ 0.83
CHMP4AQ9BY43 TAP2-202ENST00000374899 2497 ntTSL 1 (best) BASIC20.26■□□□□ 0.83
CHMP4AQ9BY43 HSPA1A-201ENST00000375651 2483 ntAPPRIS P1 BASIC20.26■□□□□ 0.83
CHMP4AQ9BY43 COLQ-206ENST00000603808 1668 ntAPPRIS ALT1 TSL 1 (best) BASIC20.26■□□□□ 0.83
CHMP4AQ9BY43 PTPRS-205ENST00000588012 5993 ntAPPRIS P3 TSL 1 (best) BASIC20.25■□□□□ 0.83
CHMP4AQ9BY43 COL2A1-202ENST00000380518 5071 ntAPPRIS ALT1 TSL 1 (best) BASIC20.25■□□□□ 0.83
CHMP4AQ9BY43 RIBC2-202ENST00000614167 1479 ntAPPRIS P1 TSL 1 (best) BASIC20.25■□□□□ 0.83
CHMP4AQ9BY43 TMEM189-UBE2V1-201ENST00000341698 2757 ntAPPRIS P1 TSL 1 (best) BASIC20.25■□□□□ 0.83
Retrieved 100 of 98,524 protein–RNA pairs in 47.5 ms