Protein–RNA interactions for Protein: Q99801

NKX3-1, Homeobox protein Nkx-3.1, humanhuman

Predicted RBP Predictions only

Length 234 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
NKX3-1Q99801 ARFIP2-203ENST00000423813 1430 ntTSL 2 BASIC14.02□□□□□ -0.16
NKX3-1Q99801 GUK1-203ENST00000366718 1275 ntAPPRIS P3 TSL 3 BASIC14.02□□□□□ -0.17
NKX3-1Q99801 CD99-202ENST00000381180 530 ntTSL 2 BASIC14.02□□□□□ -0.17
NKX3-1Q99801 ZFAND2B-207ENST00000409412 569 ntTSL 2 BASIC14.02□□□□□ -0.17
NKX3-1Q99801 FAM185BP-201ENST00000443595 716 ntBASIC14.02□□□□□ -0.17
NKX3-1Q99801 TCTN1-208ENST00000471804 718 ntTSL 3 BASIC14.02□□□□□ -0.17
NKX3-1Q99801 AC034213.1-201ENST00000507681 806 ntTSL 3 BASIC14.02□□□□□ -0.17
NKX3-1Q99801 AC010226.1-202ENST00000508517 539 ntTSL 2 BASIC14.02□□□□□ -0.17
NKX3-1Q99801 AC009567.1-201ENST00000515071 525 ntTSL 4 BASIC14.02□□□□□ -0.17
NKX3-1Q99801 POLD4-207ENST00000531239 584 ntTSL 2 BASIC14.02□□□□□ -0.17
NKX3-1Q99801 MIR4515-201ENST00000584082 81 ntBASIC14.02□□□□□ -0.17
NKX3-1Q99801 METTL23-202ENST00000586200 465 ntTSL 1 (best) BASIC14.02□□□□□ -0.17
NKX3-1Q99801 METTL23-212ENST00000590964 1006 ntTSL 1 (best) BASIC14.02□□□□□ -0.17
NKX3-1Q99801 LINC01128-210ENST00000609139 455 ntTSL 3 BASIC14.02□□□□□ -0.17
NKX3-1Q99801 AC005593.1-201ENST00000624894 515 ntBASIC14.02□□□□□ -0.17
NKX3-1Q99801 FAM215A-202ENST00000632077 792 ntBASIC14.02□□□□□ -0.17
NKX3-1Q99801 TBC1D2-201ENST00000342112 3046 ntTSL 2 BASIC14.02□□□□□ -0.17
NKX3-1Q99801 NEBL-203ENST00000417816 3008 ntAPPRIS P1 TSL 1 (best) BASIC14.02□□□□□ -0.17
NKX3-1Q99801 CAPN5-202ENST00000456580 2805 ntTSL 2 BASIC14.02□□□□□ -0.17
NKX3-1Q99801 ZNF804B-201ENST00000333190 4659 ntAPPRIS P1 TSL 1 (best) BASIC14.02□□□□□ -0.17
NKX3-1Q99801 ANOS1-201ENST00000262648 6314 ntAPPRIS P1 TSL 1 (best) BASIC14.02□□□□□ -0.17
NKX3-1Q99801 WDR20-205ENST00000424963 2695 ntTSL 5 BASIC14.02□□□□□ -0.17
NKX3-1Q99801 CELP-203ENST00000624767 2414 ntTSL 5 BASIC14.02□□□□□ -0.17
NKX3-1Q99801 AC009053.1-201ENST00000566802 2320 ntTSL 1 (best) BASIC14.02□□□□□ -0.17
NKX3-1Q99801 LINC01267-201ENST00000502417 2284 ntTSL 2 BASIC14.02□□□□□ -0.17
NKX3-1Q99801 AC007728.2-201ENST00000563315 2296 ntTSL 5 BASIC14.02□□□□□ -0.17
NKX3-1Q99801 SLCO2B1-205ENST00000525650 2121 ntTSL 2 BASIC14.02□□□□□ -0.17
NKX3-1Q99801 TTLL3-213ENST00000430793 2097 ntTSL 2 BASIC14.02□□□□□ -0.17
NKX3-1Q99801 SMARCD2-202ENST00000323347 1935 ntTSL 2 BASIC14.02□□□□□ -0.17
NKX3-1Q99801 DUS2-202ENST00000432752 1864 ntTSL 2 BASIC14.01□□□□□ -0.17
NKX3-1Q99801 U82695.1-201ENST00000635752 1889 ntBASIC14.01□□□□□ -0.17
NKX3-1Q99801 PHTF1-202ENST00000369598 3000 ntTSL 5 BASIC14.01□□□□□ -0.17
NKX3-1Q99801 AP005329.2-201ENST00000580139 1771 ntTSL 2 BASIC14.01□□□□□ -0.17
NKX3-1Q99801 INPP5K-201ENST00000320345 2880 ntTSL 5 BASIC14.01□□□□□ -0.17
NKX3-1Q99801 FBXO44-204ENST00000376762 1734 ntTSL 1 (best) BASIC14.01□□□□□ -0.17
NKX3-1Q99801 MMADHC-203ENST00000428879 1726 ntAPPRIS P1 TSL 2 BASIC14.01□□□□□ -0.17
NKX3-1Q99801 SYTL3-205ENST00000611299 2896 ntAPPRIS ALT1 TSL 5 BASIC14.01□□□□□ -0.17
NKX3-1Q99801 SAFB-205ENST00000588852 2842 ntAPPRIS ALT2 TSL 1 (best) BASIC14.01□□□□□ -0.17
NKX3-1Q99801 PSMA8-202ENST00000343848 1675 ntTSL 1 (best) BASIC14.01□□□□□ -0.17
NKX3-1Q99801 AL035685.1-202ENST00000637341 1688 ntTSL 5 BASIC14.01□□□□□ -0.17
NKX3-1Q99801 MTFMT-201ENST00000220058 2734 ntAPPRIS P1 TSL 1 (best) BASIC14.01□□□□□ -0.17
NKX3-1Q99801 LINC01565-201ENST00000356020 2697 ntTSL 2 BASIC14.01□□□□□ -0.17
NKX3-1Q99801 NXN-210ENST00000575801 2681 ntTSL 1 (best) BASIC14.01□□□□□ -0.17
NKX3-1Q99801 AP1M1-202ENST00000429941 1578 ntTSL 2 BASIC14.01□□□□□ -0.17
NKX3-1Q99801 WDR70-202ENST00000504564 1526 ntTSL 1 (best) BASIC14.01□□□□□ -0.17
NKX3-1Q99801 SLC22A7-203ENST00000372589 2549 ntAPPRIS ALT2 TSL 2 BASIC14.01□□□□□ -0.17
NKX3-1Q99801 ARSE-206ENST00000545496 2506 ntTSL 2 BASIC14.01□□□□□ -0.17
NKX3-1Q99801 SHH-201ENST00000297261 4454 ntAPPRIS P1 TSL 1 (best) BASIC14.01□□□□□ -0.17
NKX3-1Q99801 STRA6-218ENST00000574278 2455 ntTSL 2 BASIC14.01□□□□□ -0.17
NKX3-1Q99801 TSPAN12-202ENST00000415871 1495 ntAPPRIS P1 TSL 5 BASIC14.01□□□□□ -0.17
NKX3-1Q99801 SERPINF2-203ENST00000450523 1462 ntTSL 2 BASIC14.01□□□□□ -0.17
NKX3-1Q99801 BLMH-201ENST00000261714 2365 ntAPPRIS P1 TSL 1 (best) BASIC14.01□□□□□ -0.17
NKX3-1Q99801 ALOX15B-204ENST00000572022 2396 ntTSL 2 BASIC14.01□□□□□ -0.17
NKX3-1Q99801 FIP1L1-207ENST00000507922 1335 ntTSL 1 (best) BASIC14.01□□□□□ -0.17
NKX3-1Q99801 IGLL5-203ENST00000532223 1335 ntAPPRIS ALT2 TSL 1 (best) BASIC14.01□□□□□ -0.17
NKX3-1Q99801 AADAT-208ENST00000515480 2193 ntAPPRIS P3 TSL 1 (best) BASIC14.01□□□□□ -0.17
NKX3-1Q99801 GRHPR-201ENST00000318158 1280 ntAPPRIS P1 TSL 1 (best) BASIC14.01□□□□□ -0.17
NKX3-1Q99801 TSPY2-201ENST00000320701 1161 ntAPPRIS P5 TSL 1 (best) BASIC14.01□□□□□ -0.17
NKX3-1Q99801 MRPL9-202ENST00000368830 1296 ntAPPRIS P3 TSL 1 (best) BASIC14.01□□□□□ -0.17
NKX3-1Q99801 INIP-202ENST00000374236 874 ntTSL 2 BASIC14.01□□□□□ -0.17
NKX3-1Q99801 ITPRIPL2-201ENST00000381440 7247 ntAPPRIS P1 BASIC14.01□□□□□ -0.17
NKX3-1Q99801 ABHD16A-201ENST00000395952 2103 ntAPPRIS P1 TSL 1 (best) BASIC14.01□□□□□ -0.17
NKX3-1Q99801 MIR940-201ENST00000401276 94 ntBASIC14.01□□□□□ -0.17
NKX3-1Q99801 PITPNA-AS1-201ENST00000425081 542 ntTSL 2 BASIC14.01□□□□□ -0.17
NKX3-1Q99801 TSPY2-203ENST00000429039 779 ntAPPRIS ALT2 TSL 2 BASIC14.01□□□□□ -0.17
NKX3-1Q99801 SNHG17-206ENST00000436764 973 ntTSL 5 BASIC14.01□□□□□ -0.17
NKX3-1Q99801 HYAL1-206ENST00000447605 666 ntTSL 1 (best) BASIC14.01□□□□□ -0.17
NKX3-1Q99801 TSPAN32-207ENST00000451520 1236 ntAPPRIS ALT2 TSL 2 BASIC14.01□□□□□ -0.17
NKX3-1Q99801 AL513480.1-201ENST00000451731 511 ntBASIC14.01□□□□□ -0.17
NKX3-1Q99801 CXCL1P1-201ENST00000502804 216 ntBASIC14.01□□□□□ -0.17
NKX3-1Q99801 SPCS2-207ENST00000530257 612 ntTSL 3 BASIC14.01□□□□□ -0.17
NKX3-1Q99801 AP000688.1-201ENST00000535199 1221 ntTSL 2 BASIC14.01□□□□□ -0.17
NKX3-1Q99801 LITAF-211ENST00000572255 516 ntTSL 4 BASIC14.01□□□□□ -0.17
NKX3-1Q99801 LITAF-215ENST00000574763 717 ntAPPRIS P1 TSL 3 BASIC14.01□□□□□ -0.17
NKX3-1Q99801 AC092115.3-201ENST00000575838 592 ntTSL 5 BASIC14.01□□□□□ -0.17
NKX3-1Q99801 MIR7706-201ENST00000613747 67 ntBASIC14.01□□□□□ -0.17
NKX3-1Q99801 BX640515.1-201ENST00000617215 977 ntBASIC14.01□□□□□ -0.17
NKX3-1Q99801 PGM5P2-202ENST00000637225 1043 ntBASIC14.01□□□□□ -0.17
NKX3-1Q99801 TSPY4-205ENST00000640033 663 ntAPPRIS ALT2 TSL 5 BASIC14.01□□□□□ -0.17
NKX3-1Q99801 AC023157.3-201ENST00000619086 2088 ntBASIC14.01□□□□□ -0.17
NKX3-1Q99801 UNKL-201ENST00000248104 4320 ntTSL 1 (best) BASIC14.01□□□□□ -0.17
NKX3-1Q99801 CUL3-202ENST00000344951 6592 ntTSL 2 BASIC14.01□□□□□ -0.17
NKX3-1Q99801 MAP2K7-201ENST00000397979 3361 ntAPPRIS P3 TSL 1 (best) BASIC14.01□□□□□ -0.17
NKX3-1Q99801 CYP27B1-201ENST00000228606 2540 ntAPPRIS P1 TSL 1 (best) BASIC14.01□□□□□ -0.17
NKX3-1Q99801 PAK6-203ENST00000542403 2540 ntAPPRIS P1 TSL 1 (best) BASIC14.01□□□□□ -0.17
NKX3-1Q99801 MAPT-204ENST00000344290 6816 ntAPPRIS ALT2 TSL 1 (best) BASIC14.01□□□□□ -0.17
NKX3-1Q99801 CYP51A1-201ENST00000003100 3210 ntAPPRIS P1 TSL 1 (best) BASIC14.01□□□□□ -0.17
NKX3-1Q99801 NTRK2-202ENST00000304053 8226 ntTSL 1 (best) BASIC14.01□□□□□ -0.17
NKX3-1Q99801 HMGA1-202ENST00000347617 1773 ntAPPRIS ALT1 TSL 1 (best) BASIC14.01□□□□□ -0.17
NKX3-1Q99801 CRELD1-206ENST00000452070 1778 ntAPPRIS P1 TSL 2 BASIC14.01□□□□□ -0.17
NKX3-1Q99801 MAP3K8-201ENST00000263056 3096 ntAPPRIS P1 TSL 1 (best) BASIC14.01□□□□□ -0.17
NKX3-1Q99801 DTNB-228ENST00000496972 2328 ntTSL 2 BASIC14.01□□□□□ -0.17
NKX3-1Q99801 SPN-201ENST00000360121 6894 ntAPPRIS P2 TSL 1 (best) BASIC14.01□□□□□ -0.17
NKX3-1Q99801 KDM3A-201ENST00000312912 4886 ntAPPRIS P1 TSL 1 (best) BASIC14.01□□□□□ -0.17
NKX3-1Q99801 DPF3-204ENST00000546183 1514 ntTSL 2 BASIC14□□□□□ -0.17
NKX3-1Q99801 COCH-203ENST00000460581 2688 ntTSL 2 BASIC14□□□□□ -0.17
NKX3-1Q99801 ABHD3-201ENST00000289119 2064 ntAPPRIS P1 TSL 1 (best) BASIC14□□□□□ -0.17
NKX3-1Q99801 DBNDD1-202ENST00000304733 2081 ntTSL 1 (best) BASIC14□□□□□ -0.17
NKX3-1Q99801 DDOST-201ENST00000375048 2079 ntTSL 1 (best) BASIC14□□□□□ -0.17
NKX3-1Q99801 ILDR1-203ENST00000393631 1456 ntTSL 1 (best) BASIC14□□□□□ -0.17
Retrieved 100 of 98,524 protein–RNA pairs in 113.3 ms