Protein–RNA interactions for Protein: Q96AY4

TTC28, Tetratricopeptide repeat protein 28, humanhuman

Predictions only

Length 2,481 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
TTC28Q96AY4 GABARAPL1-205ENST00000539170 1700 ntTSL 3 BASIC15.81■□□□□ 0.12
TTC28Q96AY4 ANKRD30BP2-201ENST00000435744 1610 ntBASIC15.81■□□□□ 0.12
TTC28Q96AY4 FCGRT-201ENST00000221466 1798 ntAPPRIS P1 TSL 1 (best) BASIC15.81■□□□□ 0.12
TTC28Q96AY4 SLC44A3-206ENST00000527077 1943 ntTSL 2 BASIC15.81■□□□□ 0.12
TTC28Q96AY4 PTRH1-204ENST00000419060 2692 ntAPPRIS P1 TSL 2 BASIC15.81■□□□□ 0.12
TTC28Q96AY4 SAP130-202ENST00000259235 4065 ntTSL 1 (best) BASIC15.81■□□□□ 0.12
TTC28Q96AY4 PRMT5-201ENST00000216350 2271 ntTSL 2 BASIC15.81■□□□□ 0.12
TTC28Q96AY4 PHF12-202ENST00000332830 4759 ntAPPRIS P1 TSL 2 BASIC15.8■□□□□ 0.12
TTC28Q96AY4 AC245369.1-201ENST00000390634 434 ntAPPRIS P1 BASIC15.8■□□□□ 0.12
TTC28Q96AY4 RPL14-203ENST00000416518 812 ntTSL 3 BASIC15.8■□□□□ 0.12
TTC28Q96AY4 LINC00313-205ENST00000427188 967 ntTSL 1 (best) BASIC15.8■□□□□ 0.12
TTC28Q96AY4 AC098934.1-204ENST00000430114 631 ntTSL 1 (best) BASIC15.8■□□□□ 0.12
TTC28Q96AY4 ZMYND10-AS1-201ENST00000440013 250 ntTSL 3 BASIC15.8■□□□□ 0.12
TTC28Q96AY4 LSM1-203ENST00000520755 975 ntTSL 1 (best) BASIC15.8■□□□□ 0.12
TTC28Q96AY4 AC138230.1-201ENST00000525893 664 ntTSL 5 BASIC15.8■□□□□ 0.12
TTC28Q96AY4 AC020636.2-201ENST00000569170 1189 ntAPPRIS P5 TSL 1 (best) BASIC15.8■□□□□ 0.12
TTC28Q96AY4 AC127024.2-201ENST00000581019 789 ntTSL 5 BASIC15.8■□□□□ 0.12
TTC28Q96AY4 AC073592.2-201ENST00000623062 780 ntBASIC15.8■□□□□ 0.12
TTC28Q96AY4 ACOT12-201ENST00000307624 2086 ntAPPRIS P1 TSL 1 (best) BASIC15.8■□□□□ 0.12
TTC28Q96AY4 PFKL-201ENST00000349048 2912 ntAPPRIS P1 TSL 1 (best) BASIC15.8■□□□□ 0.12
TTC28Q96AY4 ELAVL1-205ENST00000596459 1473 ntAPPRIS P1 TSL 2 BASIC15.8■□□□□ 0.12
TTC28Q96AY4 CNNM3-201ENST00000305510 3447 ntAPPRIS P1 TSL 1 (best) BASIC15.8■□□□□ 0.12
TTC28Q96AY4 KRT8P29-201ENST00000420409 1371 ntBASIC15.8■□□□□ 0.12
TTC28Q96AY4 AGAP5-203ENST00000581191 2779 ntAPPRIS ALT2 TSL 5 BASIC15.8■□□□□ 0.12
TTC28Q96AY4 FAM120A-201ENST00000277165 5118 ntAPPRIS P1 TSL 1 (best) BASIC15.8■□□□□ 0.12
TTC28Q96AY4 MBTD1-201ENST00000376381 1420 ntTSL 1 (best) BASIC15.8■□□□□ 0.12
TTC28Q96AY4 POLR3H-204ENST00000407461 802 ntAPPRIS P1 TSL 1 (best) BASIC15.8■□□□□ 0.12
TTC28Q96AY4 AL035588.1-201ENST00000438967 408 ntTSL 3 BASIC15.8■□□□□ 0.12
TTC28Q96AY4 LINC00322-201ENST00000450205 699 ntTSL 3 BASIC15.8■□□□□ 0.12
TTC28Q96AY4 LINC02228-201ENST00000507600 534 ntTSL 2 BASIC15.8■□□□□ 0.12
TTC28Q96AY4 C11orf1-202ENST00000528125 534 ntTSL 2 BASIC15.8■□□□□ 0.12
TTC28Q96AY4 EIF1AD-211ENST00000533544 965 ntAPPRIS P1 TSL 3 BASIC15.8■□□□□ 0.12
TTC28Q96AY4 PIN1-207ENST00000588695 648 ntAPPRIS P1 TSL 2 BASIC15.8■□□□□ 0.12
TTC28Q96AY4 ZNF350-AS1-202ENST00000600253 577 ntTSL 4 BASIC15.8■□□□□ 0.12
TTC28Q96AY4 HMGB1P24-201ENST00000611897 328 ntBASIC15.8■□□□□ 0.12
TTC28Q96AY4 RIC8A-208ENST00000527696 2565 ntTSL 1 (best) BASIC15.8■□□□□ 0.12
TTC28Q96AY4 PRR5-ARHGAP8-201ENST00000352766 2043 ntAPPRIS P1 TSL 2 BASIC15.8■□□□□ 0.12
TTC28Q96AY4 ANKS3-202ENST00000446014 2265 ntTSL 5 BASIC15.8■□□□□ 0.12
TTC28Q96AY4 ALDH3A1-206ENST00000457500 1925 ntAPPRIS P1 TSL 1 (best) BASIC15.8■□□□□ 0.12
TTC28Q96AY4 DNM1-211ENST00000627061 2724 ntTSL 5 BASIC15.8■□□□□ 0.12
TTC28Q96AY4 EHBP1-209ENST00000431489 5076 ntAPPRIS ALT2 TSL 1 (best) BASIC15.8■□□□□ 0.12
TTC28Q96AY4 KIRREL1-202ENST00000360089 3304 ntTSL 1 (best) BASIC15.8■□□□□ 0.12
TTC28Q96AY4 UBL3-201ENST00000380680 4384 ntAPPRIS P1 TSL 1 (best) BASIC15.8■□□□□ 0.12
TTC28Q96AY4 CD74-202ENST00000353334 1449 ntTSL 1 (best) BASIC15.8■□□□□ 0.12
TTC28Q96AY4 PTHLH-205ENST00000535992 1891 ntAPPRIS P3 TSL 1 (best) BASIC15.8■□□□□ 0.12
TTC28Q96AY4 HOOK2-202ENST00000397668 2513 ntTSL 1 (best) BASIC15.79■□□□□ 0.12
TTC28Q96AY4 MMP7-201ENST00000260227 1125 ntAPPRIS P1 TSL 1 (best) BASIC15.79■□□□□ 0.12
TTC28Q96AY4 FZR1-201ENST00000313639 1215 ntTSL 1 (best) BASIC15.79■□□□□ 0.12
TTC28Q96AY4 WDR54-201ENST00000348227 1147 ntAPPRIS P1 TSL 1 (best) BASIC15.79■□□□□ 0.12
TTC28Q96AY4 TMEM239-202ENST00000380585 571 ntAPPRIS P1 TSL 1 (best) BASIC15.79■□□□□ 0.12
TTC28Q96AY4 AL606491.1-201ENST00000412797 483 ntTSL 3 BASIC15.79■□□□□ 0.12
TTC28Q96AY4 RPL8P2-201ENST00000430538 502 ntBASIC15.79■□□□□ 0.12
TTC28Q96AY4 CHCHD2P9-201ENST00000461726 456 ntBASIC15.79■□□□□ 0.12
TTC28Q96AY4 AP003398.1-201ENST00000531124 318 ntBASIC15.79■□□□□ 0.12
TTC28Q96AY4 FXYD6-FXYD2-201ENST00000532984 670 ntTSL 3 BASIC15.79■□□□□ 0.12
TTC28Q96AY4 PRB3-202ENST00000538488 1283 ntAPPRIS P5 TSL 5 BASIC15.79■□□□□ 0.12
TTC28Q96AY4 TPM1-220ENST00000559556 977 ntAPPRIS ALT1 TSL 2 BASIC15.79■□□□□ 0.12
TTC28Q96AY4 AC008758.6-201ENST00000598753 588 ntAPPRIS P1 TSL 4 BASIC15.79■□□□□ 0.12
TTC28Q96AY4 HCG18-241ENST00000602290 821 ntTSL 2 BASIC15.79■□□□□ 0.12
TTC28Q96AY4 NAMA-206ENST00000605377 509 ntTSL 5 BASIC15.79■□□□□ 0.12
TTC28Q96AY4 CD79B-201ENST00000006750 1269 ntAPPRIS P1 TSL 1 (best) BASIC15.79■□□□□ 0.12
TTC28Q96AY4 SGPP2-201ENST00000321276 3336 ntAPPRIS P1 TSL 1 (best) BASIC15.79■□□□□ 0.12
TTC28Q96AY4 TMEM53-204ENST00000372243 1579 ntTSL 2 BASIC15.79■□□□□ 0.12
TTC28Q96AY4 DNM1-202ENST00000372923 3244 ntAPPRIS P3 TSL 1 (best) BASIC15.79■□□□□ 0.12
TTC28Q96AY4 WRNIP1-202ENST00000380769 3239 ntTSL 1 (best) BASIC15.79■□□□□ 0.12
TTC28Q96AY4 LINC01554-202ENST00000436592 2052 ntTSL 1 (best) BASIC15.79■□□□□ 0.12
TTC28Q96AY4 PRR19-204ENST00000598490 1641 ntAPPRIS ALT2 TSL 1 (best) BASIC15.79■□□□□ 0.12
TTC28Q96AY4 IL9RP3-201ENST00000442856 1674 ntBASIC15.79■□□□□ 0.12
TTC28Q96AY4 RGS9BP-201ENST00000334176 2894 ntAPPRIS P1 BASIC15.79■□□□□ 0.12
TTC28Q96AY4 NPTXR-201ENST00000333039 5784 ntAPPRIS ALT2 TSL 1 (best) BASIC15.79■□□□□ 0.12
TTC28Q96AY4 KRT5-201ENST00000252242 2531 ntAPPRIS P1 TSL 1 (best) BASIC15.79■□□□□ 0.12
TTC28Q96AY4 ZNF57-201ENST00000306908 2003 ntAPPRIS P2 TSL 1 (best) BASIC15.79■□□□□ 0.12
TTC28Q96AY4 ZNF57-205ENST00000614108 2002 ntAPPRIS ALT2 TSL 5 BASIC15.79■□□□□ 0.12
TTC28Q96AY4 LAMTOR4-201ENST00000341942 605 ntAPPRIS P1 TSL 1 (best) BASIC15.79■□□□□ 0.12
TTC28Q96AY4 GHSR-202ENST00000427970 912 ntBASIC15.79■□□□□ 0.12
TTC28Q96AY4 AC012360.1-201ENST00000433219 674 ntTSL 5 BASIC15.79■□□□□ 0.12
TTC28Q96AY4 AC105362.1-201ENST00000511234 564 ntTSL 3 BASIC15.79■□□□□ 0.12
TTC28Q96AY4 AC023389.1-201ENST00000577846 576 ntTSL 4 BASIC15.79■□□□□ 0.12
TTC28Q96AY4 AC011481.2-201ENST00000585408 426 ntTSL 3 BASIC15.79■□□□□ 0.12
TTC28Q96AY4 AC107464.3-201ENST00000609172 737 ntBASIC15.79■□□□□ 0.12
TTC28Q96AY4 BLCAP-201ENST00000373537 2073 ntAPPRIS P1 TSL 1 (best) BASIC15.79■□□□□ 0.12
TTC28Q96AY4 TAGLN3-201ENST00000273368 1349 ntAPPRIS P1 TSL 1 (best) BASIC15.79■□□□□ 0.12
TTC28Q96AY4 ABCC3-202ENST00000427699 1881 ntTSL 1 (best) BASIC15.79■□□□□ 0.12
TTC28Q96AY4 UBL7-201ENST00000361351 1360 ntAPPRIS P1 TSL 5 BASIC15.79■□□□□ 0.12
TTC28Q96AY4 AC092053.1-201ENST00000605787 1936 ntBASIC15.79■□□□□ 0.12
TTC28Q96AY4 PSME2-201ENST00000216802 1404 ntAPPRIS P1 TSL 1 (best) BASIC15.79■□□□□ 0.12
TTC28Q96AY4 PRPF18-202ENST00000378572 1717 ntAPPRIS P1 TSL 1 (best) BASIC15.79■□□□□ 0.12
TTC28Q96AY4 AC005622.1-201ENST00000636801 1703 ntBASIC15.79■□□□□ 0.12
TTC28Q96AY4 SRP68-201ENST00000307877 2649 ntAPPRIS P1 TSL 1 (best) BASIC15.79■□□□□ 0.12
TTC28Q96AY4 TUBB3-201ENST00000315491 1769 ntAPPRIS P1 TSL 1 (best) BASIC15.79■□□□□ 0.12
TTC28Q96AY4 RAB4A-205ENST00000618010 2799 ntTSL 3 BASIC15.78■□□□□ 0.12
TTC28Q96AY4 ATOH1-201ENST00000306011 2212 ntAPPRIS P1 BASIC15.78■□□□□ 0.12
TTC28Q96AY4 PPA2-204ENST00000354147 667 ntTSL 1 (best) BASIC15.78■□□□□ 0.12
TTC28Q96AY4 TMEM14B-202ENST00000379542 975 ntAPPRIS P1 TSL 1 (best) BASIC15.78■□□□□ 0.12
TTC28Q96AY4 PPA2-205ENST00000432483 859 ntTSL 1 (best) BASIC15.78■□□□□ 0.12
TTC28Q96AY4 TMEM14B-210ENST00000473276 730 ntTSL 3 BASIC15.78■□□□□ 0.12
TTC28Q96AY4 AC113192.2-201ENST00000525320 308 ntTSL 3 BASIC15.78■□□□□ 0.12
TTC28Q96AY4 AP000808.2-201ENST00000542410 569 ntTSL 4 BASIC15.78■□□□□ 0.12
TTC28Q96AY4 AP3S2-204ENST00000558011 738 ntTSL 3 BASIC15.78■□□□□ 0.12
TTC28Q96AY4 AL645728.2-202ENST00000641679 227 ntBASIC15.78■□□□□ 0.12
Retrieved 100 of 98,524 protein–RNA pairs in 50 ms