Protein–RNA interactions for Protein: Q8TAU0

NKX2-3, Homeobox protein Nkx-2.3, humanhuman

Predictions only

Length 364 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
NKX2-3Q8TAU0 AP005117.1-202ENST00000581724 1908 ntBASIC18.78■□□□□ 0.6
NKX2-3Q8TAU0 CICP6-201ENST00000457191 2729 ntBASIC18.78■□□□□ 0.6
NKX2-3Q8TAU0 FUT7-201ENST00000314412 2584 ntAPPRIS P1 TSL 1 (best) BASIC18.78■□□□□ 0.6
NKX2-3Q8TAU0 UAP1L1-202ENST00000409858 3365 ntAPPRIS P1 TSL 1 (best) BASIC18.78■□□□□ 0.6
NKX2-3Q8TAU0 CCDC28A-201ENST00000332797 1496 ntTSL 1 (best) BASIC18.77■□□□□ 0.6
NKX2-3Q8TAU0 ANKK1-201ENST00000303941 2543 ntAPPRIS P1 TSL 1 (best) BASIC18.77■□□□□ 0.6
NKX2-3Q8TAU0 PCBP4-205ENST00000461554 2147 ntAPPRIS P1 TSL 1 (best) BASIC18.77■□□□□ 0.6
NKX2-3Q8TAU0 SNAP47-AS1-201ENST00000413347 1708 ntTSL 2 BASIC18.77■□□□□ 0.6
NKX2-3Q8TAU0 CCNA2-201ENST00000274026 2797 ntAPPRIS P1 TSL 1 (best) BASIC18.77■□□□□ 0.6
NKX2-3Q8TAU0 NFIA-205ENST00000371189 1989 ntTSL 2 BASIC18.77■□□□□ 0.6
NKX2-3Q8TAU0 EFEMP1-202ENST00000394555 3024 ntAPPRIS P1 TSL 1 (best) BASIC18.77■□□□□ 0.6
NKX2-3Q8TAU0 KIAA1324L-208ENST00000450689 6841 ntAPPRIS ALT2 TSL 5 BASIC18.77■□□□□ 0.6
NKX2-3Q8TAU0 SLC5A6-203ENST00000408041 2230 ntAPPRIS P1 TSL 1 (best) BASIC18.77■□□□□ 0.6
NKX2-3Q8TAU0 ARHGEF18-202ENST00000359920 5733 ntAPPRIS ALT2 TSL 2 BASIC18.77■□□□□ 0.6
NKX2-3Q8TAU0 CTSB-220ENST00000531089 1436 ntAPPRIS P1 TSL 5 BASIC18.77■□□□□ 0.6
NKX2-3Q8TAU0 PEX6-202ENST00000304611 3478 ntAPPRIS P1 TSL 1 (best) BASIC18.77■□□□□ 0.6
NKX2-3Q8TAU0 NIPAL2-202ENST00000430223 4496 ntAPPRIS P1 TSL 1 (best) BASIC18.77■□□□□ 0.6
NKX2-3Q8TAU0 ISCA1-201ENST00000311534 813 ntTSL 2 BASIC18.77■□□□□ 0.6
NKX2-3Q8TAU0 CCL25-203ENST00000390669 924 ntAPPRIS P3 TSL 1 (best) BASIC18.77■□□□□ 0.6
NKX2-3Q8TAU0 MPV17-208ENST00000405076 603 ntTSL 5 BASIC18.77■□□□□ 0.6
NKX2-3Q8TAU0 VAT1-202ENST00000420567 1069 ntTSL 2 BASIC18.77■□□□□ 0.6
NKX2-3Q8TAU0 RASL12-203ENST00000434605 982 ntTSL 2 BASIC18.77■□□□□ 0.6
NKX2-3Q8TAU0 APOA1-AS-201ENST00000444200 563 ntTSL 4 BASIC18.77■□□□□ 0.6
NKX2-3Q8TAU0 RN7SL618P-201ENST00000477850 296 ntBASIC18.77■□□□□ 0.6
NKX2-3Q8TAU0 GLI4-203ENST00000517468 963 ntTSL 5 BASIC18.77■□□□□ 0.6
NKX2-3Q8TAU0 CNOT8-210ENST00000519404 945 ntTSL 2 BASIC18.77■□□□□ 0.6
NKX2-3Q8TAU0 CNOT8-214ENST00000520671 923 ntTSL 2 BASIC18.77■□□□□ 0.6
NKX2-3Q8TAU0 CNOT8-218ENST00000521583 1151 ntTSL 1 (best) BASIC18.77■□□□□ 0.6
NKX2-3Q8TAU0 RHBDL2-203ENST00000540558 697 ntTSL 1 (best) BASIC18.77■□□□□ 0.6
NKX2-3Q8TAU0 MRPL52-216ENST00000557221 922 ntTSL 2 BASIC18.77■□□□□ 0.6
NKX2-3Q8TAU0 AP3S2-204ENST00000558011 738 ntTSL 3 BASIC18.77■□□□□ 0.6
NKX2-3Q8TAU0 AC046168.2-201ENST00000560590 875 ntTSL 3 BASIC18.77■□□□□ 0.6
NKX2-3Q8TAU0 AC008770.3-202ENST00000591944 567 ntTSL 4 BASIC18.77■□□□□ 0.6
NKX2-3Q8TAU0 CRH-201ENST00000276571 1543 ntAPPRIS P1 TSL 1 (best) BASIC18.77■□□□□ 0.6
NKX2-3Q8TAU0 REXO1L6P-201ENST00000603433 1515 ntBASIC18.77■□□□□ 0.6
NKX2-3Q8TAU0 AC012414.7-201ENST00000621235 1507 ntTSL 1 (best) BASIC18.77■□□□□ 0.6
NKX2-3Q8TAU0 HAUS3-204ENST00000506763 3166 ntTSL 2 BASIC18.77■□□□□ 0.6
NKX2-3Q8TAU0 SPATA21-205ENST00000540400 1773 ntAPPRIS ALT2 TSL 1 (best) BASIC18.77■□□□□ 0.6
NKX2-3Q8TAU0 ANKIB1-201ENST00000265742 6081 ntAPPRIS P1 TSL 1 (best) BASIC18.77■□□□□ 0.6
NKX2-3Q8TAU0 RRP1-207ENST00000497547 3022 ntAPPRIS P1 TSL 1 (best) BASIC18.77■□□□□ 0.6
NKX2-3Q8TAU0 MEX3C-204ENST00000616921 3269 ntAPPRIS ALT2 TSL 1 (best) BASIC18.77■□□□□ 0.6
NKX2-3Q8TAU0 MAN1A1-201ENST00000368468 5014 ntAPPRIS P1 TSL 2 BASIC18.77■□□□□ 0.6
NKX2-3Q8TAU0 CLN3-201ENST00000333496 1608 ntTSL 5 BASIC18.77■□□□□ 0.6
NKX2-3Q8TAU0 CFLAR-205ENST00000342795 1613 ntTSL 5 BASIC18.77■□□□□ 0.6
NKX2-3Q8TAU0 UBL7-209ENST00000567435 1720 ntAPPRIS P1 TSL 1 (best) BASIC18.77■□□□□ 0.59
NKX2-3Q8TAU0 ABHD11-201ENST00000222800 1483 ntAPPRIS P3 TSL 1 (best) BASIC18.77■□□□□ 0.59
NKX2-3Q8TAU0 SERPINF2-203ENST00000450523 1462 ntTSL 2 BASIC18.77■□□□□ 0.59
NKX2-3Q8TAU0 MFSD4A-207ENST00000536357 1841 ntTSL 2 BASIC18.77■□□□□ 0.59
NKX2-3Q8TAU0 OLIG2-201ENST00000333337 3262 ntAPPRIS P1 BASIC18.76■□□□□ 0.59
NKX2-3Q8TAU0 COMMD5-203ENST00000450361 1573 ntAPPRIS P1 TSL 1 (best) BASIC18.76■□□□□ 0.59
NKX2-3Q8TAU0 RPS28-203ENST00000600659 1326 ntAPPRIS P1 TSL 1 (best) BASIC18.76■□□□□ 0.59
NKX2-3Q8TAU0 FLII-221ENST00000578558 2377 ntTSL 5 BASIC18.76■□□□□ 0.59
NKX2-3Q8TAU0 PRSS54-204ENST00000567164 1799 ntAPPRIS P1 TSL 1 (best) BASIC18.76■□□□□ 0.59
NKX2-3Q8TAU0 ZC3H12D-201ENST00000409806 5791 ntAPPRIS P1 TSL 1 (best) BASIC18.76■□□□□ 0.59
NKX2-3Q8TAU0 IRS2-201ENST00000375856 8138 ntAPPRIS P1 TSL 1 (best) BASIC18.76■□□□□ 0.59
NKX2-3Q8TAU0 NECAB1-201ENST00000417640 5289 ntAPPRIS P1 TSL 1 (best) BASIC18.76■□□□□ 0.59
NKX2-3Q8TAU0 HTR7P1-202ENST00000624664 4411 ntBASIC18.76■□□□□ 0.59
NKX2-3Q8TAU0 NDUFS8-201ENST00000313468 791 ntAPPRIS P1 TSL 1 (best) BASIC18.76■□□□□ 0.59
NKX2-3Q8TAU0 AQP7-204ENST00000379506 1062 ntTSL 2 BASIC18.76■□□□□ 0.59
NKX2-3Q8TAU0 ESPNP-202ENST00000414828 571 ntTSL 3 BASIC18.76■□□□□ 0.59
NKX2-3Q8TAU0 DOC2GP-202ENST00000514950 1163 ntBASIC18.76■□□□□ 0.59
NKX2-3Q8TAU0 LINC02298-201ENST00000546968 965 ntTSL 5 BASIC18.76■□□□□ 0.59
NKX2-3Q8TAU0 AC092552.1-201ENST00000547243 906 ntBASIC18.76■□□□□ 0.59
NKX2-3Q8TAU0 AC105277.1-203ENST00000635492 1293 ntTSL 5 BASIC18.76■□□□□ 0.59
NKX2-3Q8TAU0 C11orf24-201ENST00000304271 2063 ntAPPRIS P3 TSL 1 (best) BASIC18.76■□□□□ 0.59
NKX2-3Q8TAU0 JKAMP-202ENST00000356057 2524 ntTSL 1 (best) BASIC18.76■□□□□ 0.59
NKX2-3Q8TAU0 ATP2A2-201ENST00000308664 4453 ntAPPRIS ALT1 TSL 1 (best) BASIC18.76■□□□□ 0.59
NKX2-3Q8TAU0 OTUB1-206ENST00000535715 1391 ntTSL 5 BASIC18.76■□□□□ 0.59
NKX2-3Q8TAU0 CCDC144B-202ENST00000445752 2197 ntTSL 2 BASIC18.76■□□□□ 0.59
NKX2-3Q8TAU0 CORO6-201ENST00000345068 2603 ntAPPRIS P2 TSL 5 BASIC18.76■□□□□ 0.59
NKX2-3Q8TAU0 SYBU-231ENST00000533065 2645 ntAPPRIS ALT2 TSL 2 BASIC18.76■□□□□ 0.59
NKX2-3Q8TAU0 ZMYM3-203ENST00000373981 1841 ntTSL 1 (best) BASIC18.76■□□□□ 0.59
NKX2-3Q8TAU0 DNM1-208ENST00000486160 3181 ntAPPRIS ALT1 TSL 1 (best) BASIC18.76■□□□□ 0.59
NKX2-3Q8TAU0 SLC20A1-201ENST00000272542 3381 ntAPPRIS P1 TSL 1 (best) BASIC18.76■□□□□ 0.59
NKX2-3Q8TAU0 HNRNPLL-212ENST00000608859 3035 ntTSL 5 BASIC18.76■□□□□ 0.59
NKX2-3Q8TAU0 YTHDF1-202ENST00000370339 3301 ntAPPRIS P1 TSL 1 (best) BASIC18.76■□□□□ 0.59
NKX2-3Q8TAU0 FAM104A-202ENST00000405159 2865 ntTSL 1 (best) BASIC18.75■□□□□ 0.59
NKX2-3Q8TAU0 AL583722.1-201ENST00000540171 1307 ntTSL 1 (best) BASIC18.75■□□□□ 0.59
NKX2-3Q8TAU0 CALM1-216ENST00000626705 1341 ntTSL 5 BASIC18.75■□□□□ 0.59
NKX2-3Q8TAU0 H2BFM-201ENST00000355016 1882 ntAPPRIS P1 TSL 2 BASIC18.75■□□□□ 0.59
NKX2-3Q8TAU0 ZNF76-202ENST00000339411 2447 ntTSL 1 (best) BASIC18.75■□□□□ 0.59
NKX2-3Q8TAU0 KLC1-207ENST00000445352 2416 ntTSL 5 BASIC18.75■□□□□ 0.59
NKX2-3Q8TAU0 ANP32A-203ENST00000465139 2440 ntAPPRIS P2 TSL 1 (best) BASIC18.75■□□□□ 0.59
NKX2-3Q8TAU0 TRPC3-202ENST00000379645 3548 ntAPPRIS ALT2 TSL 1 (best) BASIC18.75■□□□□ 0.59
NKX2-3Q8TAU0 KCTD12-201ENST00000377474 6225 ntAPPRIS P1 BASIC18.75■□□□□ 0.59
NKX2-3Q8TAU0 CRY1-201ENST00000008527 3267 ntAPPRIS P1 TSL 1 (best) BASIC18.75■□□□□ 0.59
NKX2-3Q8TAU0 IDH3G-204ENST00000427365 1526 ntTSL 5 BASIC18.75■□□□□ 0.59
NKX2-3Q8TAU0 MAPK8IP2-202ENST00000329492 3381 ntAPPRIS P1 TSL 1 (best) BASIC18.75■□□□□ 0.59
NKX2-3Q8TAU0 Z97205.2-201ENST00000564697 1639 ntBASIC18.75■□□□□ 0.59
NKX2-3Q8TAU0 SNHG22-201ENST00000589499 1615 ntTSL 2 BASIC18.75■□□□□ 0.59
NKX2-3Q8TAU0 POLR1D-207ENST00000621089 1606 ntTSL 1 (best) BASIC18.75■□□□□ 0.59
NKX2-3Q8TAU0 ADAM9-206ENST00000481513 2387 ntTSL 2 BASIC18.75■□□□□ 0.59
NKX2-3Q8TAU0 CDK11B-208ENST00000629289 2490 ntTSL 5 BASIC18.75■□□□□ 0.59
NKX2-3Q8TAU0 PHTF1-205ENST00000393357 3244 ntAPPRIS P1 TSL 1 (best) BASIC18.75■□□□□ 0.59
NKX2-3Q8TAU0 FAM181A-201ENST00000267594 1816 ntTSL 2 BASIC18.75■□□□□ 0.59
NKX2-3Q8TAU0 TUBB4A-201ENST00000264071 2552 ntAPPRIS P1 TSL 1 (best) BASIC18.75■□□□□ 0.59
NKX2-3Q8TAU0 AC007495.1-201ENST00000501259 2678 ntTSL 1 (best) BASIC18.75■□□□□ 0.59
NKX2-3Q8TAU0 C2orf54-202ENST00000388934 1911 ntAPPRIS P4 TSL 2 BASIC18.75■□□□□ 0.59
NKX2-3Q8TAU0 ATP2B1-AS1-201ENST00000605386 3632 ntBASIC18.75■□□□□ 0.59
NKX2-3Q8TAU0 ATG13-216ENST00000530500 2030 ntTSL 2 BASIC18.75■□□□□ 0.59
Retrieved 100 of 98,524 protein–RNA pairs in 58.5 ms