Protein–RNA interactions for Protein: Q07654

TFF3, Trefoil factor 3, humanhuman

Predictions only

Length 80 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
TFF3Q07654 CXXC1-201ENST00000285106 2936 ntAPPRIS P3 TSL 1 (best) BASIC14.01□□□□□ -0.17
TFF3Q07654 STIM2-203ENST00000467011 3925 ntAPPRIS ALT2 TSL 1 (best) BASIC14.01□□□□□ -0.17
TFF3Q07654 CHRDL1-204ENST00000444321 1658 ntAPPRIS ALT1 TSL 1 (best) BASIC14.01□□□□□ -0.17
TFF3Q07654 KRT8-215ENST00000552150 1687 ntTSL 1 (best) BASIC14.01□□□□□ -0.17
TFF3Q07654 KCNQ2-202ENST00000344462 2750 ntAPPRIS ALT2 TSL 1 (best) BASIC14.01□□□□□ -0.17
TFF3Q07654 GLMP-201ENST00000362007 1604 ntAPPRIS P3 TSL 1 (best) BASIC14.01□□□□□ -0.17
TFF3Q07654 PRR19-204ENST00000598490 1641 ntAPPRIS ALT2 TSL 1 (best) BASIC14.01□□□□□ -0.17
TFF3Q07654 AMOTL2-211ENST00000513145 2653 ntAPPRIS ALT1 TSL 1 (best) BASIC14.01□□□□□ -0.17
TFF3Q07654 NFIX-214ENST00000592199 1509 ntTSL 5 BASIC14.01□□□□□ -0.17
TFF3Q07654 ZNF385A-203ENST00000394313 2430 ntTSL 1 (best) BASIC14.01□□□□□ -0.17
TFF3Q07654 TBC1D10B-201ENST00000409939 3350 ntAPPRIS P1 TSL 1 (best) BASIC14.01□□□□□ -0.17
TFF3Q07654 RASIP1-201ENST00000222145 3308 ntAPPRIS P1 TSL 1 (best) BASIC14.01□□□□□ -0.17
TFF3Q07654 TCEA2-203ENST00000361317 1427 ntTSL 2 BASIC14.01□□□□□ -0.17
TFF3Q07654 CXorf38-202ENST00000378421 2380 ntTSL 2 BASIC14.01□□□□□ -0.17
TFF3Q07654 WASF1-207ENST00000392589 3220 ntAPPRIS P1 TSL 5 BASIC14.01□□□□□ -0.17
TFF3Q07654 B9D1-209ENST00000477478 1353 ntTSL 3 BASIC14.01□□□□□ -0.17
TFF3Q07654 ENOSF1-209ENST00000580982 1397 ntTSL 5 BASIC14.01□□□□□ -0.17
TFF3Q07654 BEX4-202ENST00000372695 1328 ntAPPRIS P1 TSL 1 (best) BASIC14.01□□□□□ -0.17
TFF3Q07654 PDE6D-201ENST00000287600 1175 ntAPPRIS P1 TSL 1 (best) BASIC14.01□□□□□ -0.17
TFF3Q07654 PHACTR1-202ENST00000379329 707 ntTSL 2 BASIC14.01□□□□□ -0.17
TFF3Q07654 IGHV3-35-201ENST00000390617 366 ntAPPRIS P1 BASIC14.01□□□□□ -0.17
TFF3Q07654 RBM24-203ENST00000425446 1034 ntTSL 3 BASIC14.01□□□□□ -0.17
TFF3Q07654 AL354761.2-202ENST00000430816 546 ntAPPRIS P1 TSL 5 BASIC14.01□□□□□ -0.17
TFF3Q07654 EEF1DP4-201ENST00000446006 880 ntBASIC14.01□□□□□ -0.17
TFF3Q07654 LINC01336-201ENST00000503568 534 ntTSL 4 BASIC14.01□□□□□ -0.17
TFF3Q07654 TROAP-207ENST00000548311 623 ntAPPRIS ALT2 TSL 2 BASIC14.01□□□□□ -0.17
TFF3Q07654 AL163974.1-201ENST00000554540 466 ntTSL 5 BASIC14.01□□□□□ -0.17
TFF3Q07654 AL158212.4-201ENST00000624062 1286 ntBASIC14.01□□□□□ -0.17
TFF3Q07654 ABBA01031660.1-201ENST00000635219 756 ntBASIC14.01□□□□□ -0.17
TFF3Q07654 LINC01759-203ENST00000635271 888 ntTSL 5 BASIC14.01□□□□□ -0.17
TFF3Q07654 SYNE2-228ENST00000639659 1290 ntTSL 1 (best) BASIC14.01□□□□□ -0.17
TFF3Q07654 NPRL3-201ENST00000399953 2784 ntTSL 1 (best) BASIC14.01□□□□□ -0.17
TFF3Q07654 MDGA2-202ENST00000399232 5075 ntAPPRIS ALT2 TSL 1 (best) BASIC14.01□□□□□ -0.17
TFF3Q07654 L2HGDH-202ENST00000267436 6414 ntAPPRIS P1 TSL 1 (best) BASIC14.01□□□□□ -0.17
TFF3Q07654 LINC01215-201ENST00000607746 2592 ntTSL 3 BASIC14.01□□□□□ -0.17
TFF3Q07654 DENND3-201ENST00000262585 5438 ntAPPRIS P2 TSL 5 BASIC14.01□□□□□ -0.17
TFF3Q07654 GRAMD1A-202ENST00000411896 2523 ntAPPRIS ALT2 TSL 2 BASIC14.01□□□□□ -0.17
TFF3Q07654 PEPD-202ENST00000397032 1754 ntTSL 2 BASIC14.01□□□□□ -0.17
TFF3Q07654 GAS7-213ENST00000580865 2417 ntTSL 1 (best) BASIC14.01□□□□□ -0.17
TFF3Q07654 GNAS-212ENST00000371098 1719 ntTSL 5 BASIC14.01□□□□□ -0.17
TFF3Q07654 GABARAPL1-205ENST00000539170 1700 ntTSL 3 BASIC14.01□□□□□ -0.17
TFF3Q07654 CYMP-AS1-201ENST00000457402 2351 ntTSL 1 (best) BASIC14.01□□□□□ -0.17
TFF3Q07654 FBXO21-201ENST00000330622 2906 ntAPPRIS P3 TSL 1 (best) BASIC14.01□□□□□ -0.17
TFF3Q07654 PCCB-218ENST00000490504 1613 ntTSL 3 BASIC14.01□□□□□ -0.17
TFF3Q07654 PRRX1-202ENST00000367760 2217 ntTSL 1 (best) BASIC14□□□□□ -0.17
TFF3Q07654 LGMN-202ENST00000393218 2115 ntAPPRIS P1 TSL 1 (best) BASIC14□□□□□ -0.17
TFF3Q07654 PANK4-201ENST00000378466 2677 ntAPPRIS P1 TSL 1 (best) BASIC14□□□□□ -0.17
TFF3Q07654 GLOD4-202ENST00000301329 2059 ntAPPRIS P1 TSL 1 (best) BASIC14□□□□□ -0.17
TFF3Q07654 PIAS4-201ENST00000262971 3159 ntAPPRIS P1 TSL 1 (best) BASIC14□□□□□ -0.17
TFF3Q07654 PDE4C-201ENST00000262805 2472 ntAPPRIS ALT2 TSL 1 (best) BASIC14□□□□□ -0.17
TFF3Q07654 COL8A2-202ENST00000397799 4670 ntAPPRIS P1 TSL 5 BASIC14□□□□□ -0.17
TFF3Q07654 NFASC-205ENST00000403080 2462 ntTSL 2 BASIC14□□□□□ -0.17
TFF3Q07654 LTF-203ENST00000426532 2494 ntTSL 2 BASIC14□□□□□ -0.17
TFF3Q07654 SGK3-206ENST00000520976 2483 ntTSL 2 BASIC14□□□□□ -0.17
TFF3Q07654 SNAP47-213ENST00000617596 1905 ntAPPRIS ALT2 TSL 1 (best) BASIC14□□□□□ -0.17
TFF3Q07654 ADD1-205ENST00000398125 4079 ntTSL 5 BASIC14□□□□□ -0.17
TFF3Q07654 B4GALNT4-201ENST00000329962 3444 ntAPPRIS P1 TSL 1 (best) BASIC14□□□□□ -0.17
TFF3Q07654 BEND4-202ENST00000504360 8692 ntTSL 1 (best) BASIC14□□□□□ -0.17
TFF3Q07654 DNMT3A-205ENST00000402667 2300 ntAPPRIS ALT1 TSL 5 BASIC14□□□□□ -0.17
TFF3Q07654 NCR1-201ENST00000291890 1155 ntAPPRIS P3 TSL 5 BASIC14□□□□□ -0.17
TFF3Q07654 NCR1-202ENST00000338835 973 ntAPPRIS ALT2 TSL 1 (best) BASIC14□□□□□ -0.17
TFF3Q07654 NCR1-203ENST00000350790 739 ntTSL 1 (best) BASIC14□□□□□ -0.17
TFF3Q07654 RHOC-206ENST00000369637 888 ntAPPRIS P1 TSL 3 BASIC14□□□□□ -0.17
TFF3Q07654 ATP5J-205ENST00000400094 589 ntAPPRIS P1 TSL 2 BASIC14□□□□□ -0.17
TFF3Q07654 SEMA4B-202ENST00000411539 3807 ntAPPRIS P1 TSL 1 (best) BASIC14□□□□□ -0.17
TFF3Q07654 RPS24-203ENST00000435275 656 ntAPPRIS ALT1 TSL 2 BASIC14□□□□□ -0.17
TFF3Q07654 RPL13P2-201ENST00000440687 659 ntBASIC14□□□□□ -0.17
TFF3Q07654 STARD4-205ENST00000505803 803 ntAPPRIS P1 TSL 2 BASIC14□□□□□ -0.17
TFF3Q07654 STARD4-207ENST00000509887 1186 ntTSL 1 (best) BASIC14□□□□□ -0.17
TFF3Q07654 C8orf37-AS1-202ENST00000517655 562 ntTSL 4 BASIC14□□□□□ -0.17
TFF3Q07654 AC009908.1-201ENST00000523030 412 ntTSL 3 BASIC14□□□□□ -0.17
TFF3Q07654 C11orf98-202ENST00000525675 405 ntTSL 2 BASIC14□□□□□ -0.17
TFF3Q07654 AP000721.1-201ENST00000535431 559 ntAPPRIS P1 TSL 5 BASIC14□□□□□ -0.17
TFF3Q07654 AL583810.1-201ENST00000553344 1045 ntBASIC14□□□□□ -0.17
TFF3Q07654 AL122035.1-201ENST00000556640 550 ntTSL 2 BASIC14□□□□□ -0.17
TFF3Q07654 CMTM3-212ENST00000566121 572 ntTSL 3 BASIC14□□□□□ -0.17
TFF3Q07654 AC036164.1-201ENST00000570544 333 ntBASIC14□□□□□ -0.17
TFF3Q07654 AC027601.2-201ENST00000571085 805 ntTSL 5 BASIC14□□□□□ -0.17
TFF3Q07654 PIGL-212ENST00000581006 554 ntTSL 4 BASIC14□□□□□ -0.17
TFF3Q07654 TUBB6-203ENST00000586653 788 ntTSL 2 BASIC14□□□□□ -0.17
TFF3Q07654 ANKS3-227ENST00000592711 580 ntTSL 4 BASIC14□□□□□ -0.17
TFF3Q07654 RPS24-214ENST00000613865 538 ntTSL 5 BASIC14□□□□□ -0.17
TFF3Q07654 PFAS-212ENST00000625942 396 ntTSL 5 BASIC14□□□□□ -0.17
TFF3Q07654 HIC2-201ENST00000407464 6798 ntAPPRIS P1 TSL 1 (best) BASIC14□□□□□ -0.17
TFF3Q07654 CRTC3-202ENST00000420329 5209 ntAPPRIS ALT1 TSL 2 BASIC14□□□□□ -0.17
TFF3Q07654 PCIF1-201ENST00000372409 2747 ntAPPRIS P1 TSL 1 (best) BASIC14□□□□□ -0.17
TFF3Q07654 PON2-201ENST00000222572 1745 ntAPPRIS P1 TSL 1 (best) BASIC14□□□□□ -0.17
TFF3Q07654 LINC01185-202ENST00000452343 1705 ntTSL 2 BASIC14□□□□□ -0.17
TFF3Q07654 LINC01144-201ENST00000626198 1710 ntBASIC14□□□□□ -0.17
TFF3Q07654 KLF10-202ENST00000395884 3659 ntTSL 1 (best) BASIC14□□□□□ -0.17
TFF3Q07654 GOLGA2P3Y-201ENST00000416946 1653 ntBASIC14□□□□□ -0.17
TFF3Q07654 FAM222B-211ENST00000582266 2613 ntTSL 1 (best) BASIC14□□□□□ -0.17
TFF3Q07654 HIP1R-201ENST00000253083 4539 ntAPPRIS P1 TSL 1 (best) BASIC14□□□□□ -0.17
TFF3Q07654 EWSR1-203ENST00000332050 2552 ntTSL 1 (best) BASIC14□□□□□ -0.17
TFF3Q07654 JMJD4-206ENST00000615711 2591 ntTSL 1 (best) BASIC14□□□□□ -0.17
TFF3Q07654 VIPR2-201ENST00000262178 3944 ntAPPRIS P2 TSL 1 (best) BASIC14□□□□□ -0.17
TFF3Q07654 SLC22A12-205ENST00000473690 2522 ntTSL 2 BASIC14□□□□□ -0.17
TFF3Q07654 MED17-201ENST00000251871 5142 ntAPPRIS P1 TSL 1 (best) BASIC14□□□□□ -0.17
TFF3Q07654 NFIA-205ENST00000371189 1989 ntTSL 2 BASIC14□□□□□ -0.17
TFF3Q07654 ETV7-201ENST00000339796 1530 ntAPPRIS ALT2 TSL 1 (best) BASIC14□□□□□ -0.17
Retrieved 100 of 98,524 protein–RNA pairs in 38.9 ms