Protein–RNA interactions for Protein: P55344

LIM2, Lens fiber membrane intrinsic protein, humanhuman

Predictions only

Length 173 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
LIM2P55344 SPDYE17-201ENST00000412399 783 ntBASIC15.16■□□□□ 0.02
LIM2P55344 AC107890.1-201ENST00000422478 521 ntBASIC15.16■□□□□ 0.02
LIM2P55344 PMS2P2-201ENST00000425039 1128 ntBASIC15.16■□□□□ 0.02
LIM2P55344 YAE1D1-202ENST00000432096 968 ntTSL 2 BASIC15.16■□□□□ 0.02
LIM2P55344 COMT-209ENST00000449653 1035 ntAPPRIS ALT2 TSL 1 (best) BASIC15.16■□□□□ 0.02
LIM2P55344 ST7-OT4-203ENST00000466018 894 ntTSL 5 BASIC15.16■□□□□ 0.02
LIM2P55344 C3orf67-212ENST00000491845 832 ntTSL 1 (best) BASIC15.16■□□□□ 0.02
LIM2P55344 AC020659.2-201ENST00000510176 585 ntTSL 4 BASIC15.16■□□□□ 0.02
LIM2P55344 AC007406.4-201ENST00000539568 765 ntTSL 1 (best) BASIC15.16■□□□□ 0.02
LIM2P55344 OBP2A-206ENST00000539850 914 ntAPPRIS P1 TSL 5 BASIC15.16■□□□□ 0.02
LIM2P55344 DRAM1-202ENST00000544152 1048 ntTSL 2 BASIC15.16■□□□□ 0.02
LIM2P55344 BAD-207ENST00000544785 525 ntTSL 3 BASIC15.16■□□□□ 0.02
LIM2P55344 AL589739.1-201ENST00000607720 493 ntBASIC15.16■□□□□ 0.02
LIM2P55344 GPER1-207ENST00000619052 571 ntTSL 2 BASIC15.16■□□□□ 0.02
LIM2P55344 AQP12B-206ENST00000621682 1080 ntAPPRIS ALT2 TSL 5 BASIC15.16■□□□□ 0.02
LIM2P55344 MANSC1-202ENST00000535902 5831 ntAPPRIS P1 TSL 1 (best) BASIC15.16■□□□□ 0.02
LIM2P55344 AC005064.1-201ENST00000422488 2725 ntTSL 1 (best) BASIC15.16■□□□□ 0.02
LIM2P55344 PLXND1-201ENST00000324093 7094 ntAPPRIS P1 TSL 1 (best) BASIC15.16■□□□□ 0.02
LIM2P55344 ZNF496-201ENST00000294753 5336 ntAPPRIS P1 TSL 1 (best) BASIC15.16■□□□□ 0.02
LIM2P55344 ATP6V1B2-201ENST00000276390 2875 ntAPPRIS P1 TSL 1 (best) BASIC15.16■□□□□ 0.02
LIM2P55344 GFOD2-203ENST00000602377 1991 ntTSL 4 BASIC15.16■□□□□ 0.02
LIM2P55344 CLEC18A-203ENST00000449317 1875 ntAPPRIS ALT2 TSL 5 BASIC15.16■□□□□ 0.02
LIM2P55344 CBWD2-204ENST00000433343 1411 ntTSL 1 (best) BASIC15.16■□□□□ 0.02
LIM2P55344 KRT8P37-201ENST00000451609 1420 ntBASIC15.16■□□□□ 0.02
LIM2P55344 MCM4-201ENST00000262105 4183 ntAPPRIS P1 TSL 1 (best) BASIC15.16■□□□□ 0.02
LIM2P55344 DBET-201ENST00000630918 3363 ntBASIC15.16■□□□□ 0.02
LIM2P55344 SLC26A5-202ENST00000339444 2474 ntTSL 1 (best) BASIC15.16■□□□□ 0.02
LIM2P55344 HEY1-208ENST00000523976 1325 ntTSL 2 BASIC15.16■□□□□ 0.02
LIM2P55344 PPP1R15A-201ENST00000200453 2378 ntAPPRIS P1 TSL 1 (best) BASIC15.16■□□□□ 0.02
LIM2P55344 TRIM46-211ENST00000611379 3082 ntTSL 1 (best) BASIC15.15■□□□□ 0.02
LIM2P55344 SYNRG-222ENST00000614941 3406 ntTSL 1 (best) BASIC15.15■□□□□ 0.02
LIM2P55344 CUX1-213ENST00000549414 4452 ntAPPRIS ALT2 TSL 5 BASIC15.15■□□□□ 0.02
LIM2P55344 NR4A1-204ENST00000394825 2528 ntAPPRIS P1 TSL 1 (best) BASIC15.15■□□□□ 0.02
LIM2P55344 CETN4P-206ENST00000642099 2168 ntBASIC15.15■□□□□ 0.02
LIM2P55344 EIF4G1-204ENST00000352767 5484 ntTSL 1 (best) BASIC15.15■□□□□ 0.02
LIM2P55344 SERPINF2-203ENST00000450523 1462 ntTSL 2 BASIC15.15■□□□□ 0.02
LIM2P55344 RNF34-202ENST00000392464 1722 ntTSL 5 BASIC15.15■□□□□ 0.02
LIM2P55344 IL11RA-215ENST00000602473 1388 ntTSL 1 (best) BASIC15.15■□□□□ 0.02
LIM2P55344 ATXN2-201ENST00000377617 4702 ntAPPRIS P3 TSL 1 (best) BASIC15.15■□□□□ 0.02
LIM2P55344 ATP2A3-206ENST00000397043 3197 ntAPPRIS ALT1 TSL 1 (best) BASIC15.15■□□□□ 0.02
LIM2P55344 KCNT1-206ENST00000486577 3760 ntAPPRIS ALT2 TSL 5 BASIC15.15■□□□□ 0.02
LIM2P55344 GGT6-204ENST00000574154 2482 ntAPPRIS P1 TSL 1 (best) BASIC15.15■□□□□ 0.02
LIM2P55344 SRP19-201ENST00000282999 937 ntTSL 1 (best) BASIC15.15■□□□□ 0.02
LIM2P55344 PAM16-201ENST00000318059 587 ntAPPRIS P1 TSL 1 (best) BASIC15.15■□□□□ 0.02
LIM2P55344 RNF186-201ENST00000375121 1250 ntAPPRIS P1 BASIC15.15■□□□□ 0.02
LIM2P55344 LY6G6C-201ENST00000375819 992 ntAPPRIS P1 TSL 1 (best) BASIC15.15■□□□□ 0.02
LIM2P55344 GPR162-202ENST00000382315 1150 ntTSL 1 (best) BASIC15.15■□□□□ 0.02
LIM2P55344 CAMKMT-204ENST00000407131 652 ntTSL 3 BASIC15.15■□□□□ 0.02
LIM2P55344 RNF183-202ENST00000416588 849 ntAPPRIS P1 TSL 3 BASIC15.15■□□□□ 0.02
LIM2P55344 AL079307.3-201ENST00000556114 283 ntBASIC15.15■□□□□ 0.02
LIM2P55344 AC027088.1-201ENST00000557966 1117 ntTSL 2 BASIC15.15■□□□□ 0.02
LIM2P55344 AC090607.3-202ENST00000558971 383 ntTSL 3 BASIC15.15■□□□□ 0.02
LIM2P55344 COMMD4-207ENST00000562789 746 ntTSL 2 BASIC15.15■□□□□ 0.02
LIM2P55344 AC140878.1-201ENST00000565277 250 ntBASIC15.15■□□□□ 0.02
LIM2P55344 FSTL3-202ENST00000588773 746 ntTSL 2 BASIC15.15■□□□□ 0.02
LIM2P55344 CLCNKB-204ENST00000619181 1544 ntTSL 5 BASIC15.15■□□□□ 0.02
LIM2P55344 MBNL1-201ENST00000282486 6422 ntAPPRIS P4 TSL 5 BASIC15.15■□□□□ 0.02
LIM2P55344 AK4-207ENST00000545314 6887 ntAPPRIS P1 TSL 1 (best) BASIC15.15■□□□□ 0.02
LIM2P55344 SLC44A3-206ENST00000527077 1943 ntTSL 2 BASIC15.15■□□□□ 0.02
LIM2P55344 TOMM40-207ENST00000592434 3415 ntAPPRIS ALT2 TSL 2 BASIC15.15■□□□□ 0.02
LIM2P55344 STAT1-202ENST00000392322 2716 ntAPPRIS ALT1 TSL 1 (best) BASIC15.15■□□□□ 0.02
LIM2P55344 JAK3-201ENST00000458235 5432 ntAPPRIS P2 TSL 5 BASIC15.14■□□□□ 0.02
LIM2P55344 AC073347.1-201ENST00000421633 2643 ntBASIC15.14■□□□□ 0.01
LIM2P55344 AC091100.1-201ENST00000558424 2354 ntTSL 2 BASIC15.14■□□□□ 0.01
LIM2P55344 ZNF398-203ENST00000483892 2121 ntTSL 5 BASIC15.14■□□□□ 0.01
LIM2P55344 CADPS2-204ENST00000412584 4308 ntAPPRIS P2 TSL 1 (best) BASIC15.14■□□□□ 0.01
LIM2P55344 BMP2K-201ENST00000335016 3804 ntAPPRIS ALT2 TSL 5 BASIC15.14■□□□□ 0.01
LIM2P55344 RPS9-207ENST00000441429 1600 ntTSL 1 (best) BASIC15.14■□□□□ 0.01
LIM2P55344 ZNF7-207ENST00000528372 2905 ntAPPRIS P3 TSL 1 (best) BASIC15.14■□□□□ 0.01
LIM2P55344 ALOX15-205ENST00000574640 2422 ntTSL 2 BASIC15.14■□□□□ 0.01
LIM2P55344 MYZAP-202ENST00000380565 2181 ntAPPRIS ALT2 TSL 1 (best) BASIC15.14■□□□□ 0.01
LIM2P55344 MYEF2-201ENST00000267836 2958 ntAPPRIS ALT2 TSL 1 (best) BASIC15.14■□□□□ 0.01
LIM2P55344 SLC12A5-209ENST00000616201 2955 ntTSL 5 BASIC15.14■□□□□ 0.01
LIM2P55344 SHISA5-210ENST00000444115 2081 ntTSL 2 BASIC15.14■□□□□ 0.01
LIM2P55344 PRMT1-217ENST00000532489 1686 ntTSL 5 BASIC15.14■□□□□ 0.01
LIM2P55344 LRRC28-202ENST00000331450 752 ntTSL 1 (best) BASIC15.14■□□□□ 0.01
LIM2P55344 NKAIN2-201ENST00000368416 1106 ntTSL 1 (best) BASIC15.14■□□□□ 0.01
LIM2P55344 GUK1-210ENST00000391865 990 ntAPPRIS ALT1 TSL 1 (best) BASIC15.14■□□□□ 0.01
LIM2P55344 PNMT-202ENST00000394246 821 ntTSL 2 BASIC15.14■□□□□ 0.01
LIM2P55344 HLA-DRB6-201ENST00000411500 1235 ntBASIC15.14■□□□□ 0.01
LIM2P55344 IQCF3-201ENST00000437810 1270 ntAPPRIS P1 TSL 1 (best) BASIC15.14■□□□□ 0.01
LIM2P55344 AL121753.1-201ENST00000444717 529 ntAPPRIS P1 TSL 3 BASIC15.14■□□□□ 0.01
LIM2P55344 EEF1DP4-201ENST00000446006 880 ntBASIC15.14■□□□□ 0.01
LIM2P55344 AC091729.1-201ENST00000449721 869 ntTSL 3 BASIC15.14■□□□□ 0.01
LIM2P55344 ZIC4-214ENST00000491672 925 ntTSL 4 BASIC15.14■□□□□ 0.01
LIM2P55344 ZNF789-211ENST00000493485 556 ntTSL 4 BASIC15.14■□□□□ 0.01
LIM2P55344 AC069120.2-201ENST00000524091 540 ntBASIC15.14■□□□□ 0.01
LIM2P55344 BRK1-201ENST00000530758 1233 ntAPPRIS P1 TSL 1 (best) BASIC15.14■□□□□ 0.01
LIM2P55344 NDUFA4L2-202ENST00000554503 1177 ntAPPRIS P1 TSL 1 (best) BASIC15.14■□□□□ 0.01
LIM2P55344 AC073263.1-201ENST00000616370 494 ntTSL 3 BASIC15.14■□□□□ 0.01
LIM2P55344 SPDYE12P-201ENST00000618416 771 ntBASIC15.14■□□□□ 0.01
LIM2P55344 MIR137HG-202ENST00000424528 2639 ntTSL 2 BASIC15.14■□□□□ 0.01
LIM2P55344 AQP3-201ENST00000297991 1849 ntAPPRIS P1 TSL 1 (best) BASIC15.14■□□□□ 0.01
LIM2P55344 KDM6A-202ENST00000382899 5789 ntTSL 1 (best) BASIC15.14■□□□□ 0.01
LIM2P55344 CHSY3-201ENST00000305031 3850 ntAPPRIS P1 TSL 1 (best) BASIC15.14■□□□□ 0.01
LIM2P55344 REXO1L1P-202ENST00000608646 1974 ntBASIC15.14■□□□□ 0.01
LIM2P55344 ACTN2-207ENST00000546208 5103 ntTSL 1 (best) BASIC15.14■□□□□ 0.01
LIM2P55344 ZNF302-207ENST00000505365 2955 ntTSL 2 BASIC15.14■□□□□ 0.01
LIM2P55344 SLC4A3-201ENST00000273063 4246 ntTSL 1 (best) BASIC15.14■□□□□ 0.01
LIM2P55344 CNGA4-201ENST00000379936 1863 ntAPPRIS P1 TSL 1 (best) BASIC15.14■□□□□ 0.01
Retrieved 100 of 98,524 protein–RNA pairs in 58.5 ms