Protein–RNA interactions for Protein: P49916

LIG3, DNA ligase 3, humanhuman

Predictions only

Length 1,009 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
LIG3P49916 DCUN1D4-203ENST00000451288 4269 ntTSL 2 BASIC16.89■□□□□ 0.29
LIG3P49916 CYB561A3-203ENST00000447532 1803 ntTSL 5 BASIC16.89■□□□□ 0.29
LIG3P49916 LILRA6-201ENST00000245621 1395 ntAPPRIS ALT2 TSL 5 BASIC16.89■□□□□ 0.29
LIG3P49916 PAK6-203ENST00000542403 2540 ntAPPRIS P1 TSL 1 (best) BASIC16.89■□□□□ 0.29
LIG3P49916 AC092919.2-201ENST00000623631 1645 ntBASIC16.88■□□□□ 0.29
LIG3P49916 MAP4-202ENST00000360240 5142 ntAPPRIS P3 TSL 1 (best) BASIC16.88■□□□□ 0.29
LIG3P49916 PRAL-201ENST00000624952 3286 ntBASIC16.88■□□□□ 0.29
LIG3P49916 CHAF1A-201ENST00000301280 3339 ntAPPRIS P1 TSL 1 (best) BASIC16.88■□□□□ 0.29
LIG3P49916 KRT8P49-201ENST00000604166 1432 ntBASIC16.88■□□□□ 0.29
LIG3P49916 CCHCR1-201ENST00000376266 2625 ntAPPRIS P3 TSL 1 (best) BASIC16.88■□□□□ 0.29
LIG3P49916 PRR15-201ENST00000319694 1678 ntAPPRIS P1 TSL 1 (best) BASIC16.88■□□□□ 0.29
LIG3P49916 OSBP2-201ENST00000332585 4340 ntAPPRIS P3 TSL 1 (best) BASIC16.88■□□□□ 0.29
LIG3P49916 AP005117.1-202ENST00000581724 1908 ntBASIC16.88■□□□□ 0.29
LIG3P49916 RASGRF1-202ENST00000419573 6294 ntTSL 2 BASIC16.88■□□□□ 0.29
LIG3P49916 RHOXF1P3-203ENST00000640298 2668 ntTSL 5 BASIC16.88■□□□□ 0.29
LIG3P49916 MCL1-202ENST00000369026 3932 ntAPPRIS P1 TSL 1 (best) BASIC16.88■□□□□ 0.29
LIG3P49916 WDR4-201ENST00000330317 1471 ntAPPRIS P1 TSL 1 (best) BASIC16.88■□□□□ 0.29
LIG3P49916 POU5F1-204ENST00000471529 1723 ntTSL 1 (best) BASIC16.88■□□□□ 0.29
LIG3P49916 CCDC40-201ENST00000269318 1970 ntTSL 2 BASIC16.88■□□□□ 0.29
LIG3P49916 NFIA-205ENST00000371189 1989 ntTSL 2 BASIC16.88■□□□□ 0.29
LIG3P49916 SCAI-202ENST00000373549 1968 ntTSL 1 (best) BASIC16.88■□□□□ 0.29
LIG3P49916 ME2P1-201ENST00000426028 1970 ntBASIC16.88■□□□□ 0.29
LIG3P49916 NCKIPSD-201ENST00000294129 2989 ntAPPRIS P3 TSL 1 (best) BASIC16.88■□□□□ 0.29
LIG3P49916 CHST5-201ENST00000336257 3245 ntAPPRIS P1 TSL 1 (best) BASIC16.88■□□□□ 0.29
LIG3P49916 TLE4-204ENST00000376537 2793 ntTSL 1 (best) BASIC16.88■□□□□ 0.29
LIG3P49916 WARS-232ENST00000556645 2508 ntTSL 5 BASIC16.88■□□□□ 0.29
LIG3P49916 MCM3AP-AS1-203ENST00000421927 2280 ntTSL 2 BASIC16.88■□□□□ 0.29
LIG3P49916 HSD17B6-203ENST00000554150 1547 ntAPPRIS P1 TSL 5 BASIC16.88■□□□□ 0.29
LIG3P49916 NEURL1-201ENST00000369780 4314 ntAPPRIS P1 TSL 1 (best) BASIC16.88■□□□□ 0.29
LIG3P49916 RPS17-201ENST00000330244 592 ntAPPRIS P1 TSL 1 (best) BASIC16.88■□□□□ 0.29
LIG3P49916 CD82-202ENST00000342935 967 ntTSL 5 BASIC16.88■□□□□ 0.29
LIG3P49916 GSTK1-207ENST00000479303 1185 ntTSL 1 (best) BASIC16.88■□□□□ 0.29
LIG3P49916 BATF2-204ENST00000527716 1230 ntTSL 2 BASIC16.88■□□□□ 0.29
LIG3P49916 HIST4H4-204ENST00000539745 577 ntAPPRIS P1 BASIC16.88■□□□□ 0.29
LIG3P49916 AL390334.1-205ENST00000555797 411 ntTSL 3 BASIC16.88■□□□□ 0.29
LIG3P49916 AC013565.3-202ENST00000570120 460 ntTSL 2 BASIC16.88■□□□□ 0.29
LIG3P49916 AC008761.1-201ENST00000595363 217 ntTSL 5 BASIC16.88■□□□□ 0.29
LIG3P49916 TVP23A-210ENST00000612195 1298 ntAPPRIS P1 TSL 1 (best) BASIC16.88■□□□□ 0.29
LIG3P49916 LINC00623-201ENST00000613486 486 ntTSL 5 BASIC16.88■□□□□ 0.29
LIG3P49916 MCCC2-209ENST00000629193 1128 ntTSL 1 (best) BASIC16.88■□□□□ 0.29
LIG3P49916 TRIM67-202ENST00000444294 9320 ntAPPRIS ALT1 TSL 5 BASIC16.88■□□□□ 0.29
LIG3P49916 HOXC5-201ENST00000312492 1805 ntAPPRIS P1 TSL 1 (best) BASIC16.88■□□□□ 0.29
LIG3P49916 CALHM2-202ENST00000369788 1843 ntAPPRIS P1 TSL 2 BASIC16.88■□□□□ 0.29
LIG3P49916 PIK3CD-206ENST00000536656 5483 ntTSL 5 BASIC16.88■□□□□ 0.29
LIG3P49916 PIK3CD-208ENST00000628140 5483 ntTSL 5 BASIC16.88■□□□□ 0.29
LIG3P49916 TUSC3-201ENST00000382020 3683 ntAPPRIS ALT1 TSL 1 (best) BASIC16.88■□□□□ 0.29
LIG3P49916 GOPC-203ENST00000535237 4460 ntTSL 1 (best) BASIC16.88■□□□□ 0.29
LIG3P49916 SLITRK2-202ENST00000370490 7672 ntAPPRIS P1 BASIC16.88■□□□□ 0.29
LIG3P49916 SARM1-208ENST00000585482 10309 ntAPPRIS P1 TSL 1 (best) BASIC16.88■□□□□ 0.29
LIG3P49916 ULBP2-201ENST00000367351 1349 ntAPPRIS P1 TSL 1 (best) BASIC16.88■□□□□ 0.29
LIG3P49916 ARC-201ENST00000356613 2948 ntAPPRIS P1 TSL 1 (best) BASIC16.88■□□□□ 0.29
LIG3P49916 RAB2A-201ENST00000262646 3848 ntAPPRIS P1 TSL 1 (best) BASIC16.88■□□□□ 0.29
LIG3P49916 ZNF804B-201ENST00000333190 4659 ntAPPRIS P1 TSL 1 (best) BASIC16.88■□□□□ 0.29
LIG3P49916 WDR6-222ENST00000615452 1949 ntTSL 5 BASIC16.88■□□□□ 0.29
LIG3P49916 ELMO3-202ENST00000393997 2531 ntAPPRIS P2 TSL 2 BASIC16.88■□□□□ 0.29
LIG3P49916 HOXB6-203ENST00000484302 1960 ntAPPRIS P1 TSL 2 BASIC16.88■□□□□ 0.29
LIG3P49916 ERO1B-202ENST00000354619 4567 ntAPPRIS P1 TSL 1 (best) BASIC16.87■□□□□ 0.29
LIG3P49916 SEPT9-244ENST00000592420 2588 ntTSL 2 BASIC16.87■□□□□ 0.29
LIG3P49916 DLX6-202ENST00000518156 2304 ntAPPRIS P2 TSL 1 (best) BASIC16.87■□□□□ 0.29
LIG3P49916 WBP4-201ENST00000379487 2623 ntAPPRIS P1 TSL 1 (best) BASIC16.87■□□□□ 0.29
LIG3P49916 HHIP-202ENST00000434550 1770 ntTSL 1 (best) BASIC16.87■□□□□ 0.29
LIG3P49916 SOX14-201ENST00000306087 2055 ntAPPRIS P1 BASIC16.87■□□□□ 0.29
LIG3P49916 DPP6-205ENST00000427557 2388 ntTSL 2 BASIC16.87■□□□□ 0.29
LIG3P49916 AC012569.1-201ENST00000591191 1524 ntBASIC16.87■□□□□ 0.29
LIG3P49916 SPHK2-202ENST00000340932 2492 ntTSL 5 BASIC16.87■□□□□ 0.29
LIG3P49916 ADAMTSL1-202ENST00000327883 1864 ntTSL 1 (best) BASIC16.87■□□□□ 0.29
LIG3P49916 KCNK7-203ENST00000394216 1563 ntTSL 1 (best) BASIC16.87■□□□□ 0.29
LIG3P49916 TOR4A-201ENST00000357503 4148 ntAPPRIS P1 TSL 2 BASIC16.87■□□□□ 0.29
LIG3P49916 FIGLA-201ENST00000332372 722 ntAPPRIS P1 TSL 1 (best) BASIC16.87■□□□□ 0.29
LIG3P49916 CD99L2-202ENST00000355149 1278 ntAPPRIS ALT2 TSL 1 (best) BASIC16.87■□□□□ 0.29
LIG3P49916 NEK7-201ENST00000367383 586 ntTSL 2 BASIC16.87■□□□□ 0.29
LIG3P49916 TEX30-206ENST00000376032 1165 ntAPPRIS P1 TSL 1 (best) BASIC16.87■□□□□ 0.29
LIG3P49916 PARK7-203ENST00000377491 977 ntAPPRIS P1 TSL 3 BASIC16.87■□□□□ 0.29
LIG3P49916 MRPS12-203ENST00000407800 1220 ntAPPRIS P1 TSL 1 (best) BASIC16.87■□□□□ 0.29
LIG3P49916 APCDD1L-AS1-201ENST00000420279 555 ntTSL 5 BASIC16.87■□□□□ 0.29
LIG3P49916 AP001058.1-201ENST00000423967 463 ntTSL 2 BASIC16.87■□□□□ 0.29
LIG3P49916 AC006042.2-201ENST00000428660 568 ntTSL 4 BASIC16.87■□□□□ 0.29
LIG3P49916 FAM58CP-201ENST00000435741 640 ntBASIC16.87■□□□□ 0.29
LIG3P49916 MKNK2P1-201ENST00000437526 628 ntBASIC16.87■□□□□ 0.29
LIG3P49916 YBX1P5-201ENST00000509441 847 ntBASIC16.87■□□□□ 0.29
LIG3P49916 AP002472.1-201ENST00000577490 586 ntBASIC16.87■□□□□ 0.29
LIG3P49916 MIR4469-201ENST00000583919 79 ntBASIC16.87■□□□□ 0.29
LIG3P49916 BORCS8-206ENST00000585679 801 ntTSL 3 BASIC16.87■□□□□ 0.29
LIG3P49916 TMIGD2-203ENST00000600114 489 ntAPPRIS ALT2 TSL 1 (best) BASIC16.87■□□□□ 0.29
LIG3P49916 AC091812.2-201ENST00000619081 385 ntBASIC16.87■□□□□ 0.29
LIG3P49916 TMED5-202ENST00000370282 6104 ntAPPRIS P1 TSL 1 (best) BASIC16.87■□□□□ 0.29
LIG3P49916 ME2-201ENST00000321341 9415 ntAPPRIS P1 TSL 1 (best) BASIC16.87■□□□□ 0.29
LIG3P49916 NF1-211ENST00000487476 2265 ntTSL 1 (best) BASIC16.87■□□□□ 0.29
LIG3P49916 PNRC1-202ENST00000354922 1345 ntTSL 1 (best) BASIC16.87■□□□□ 0.29
LIG3P49916 WDR20-205ENST00000424963 2695 ntTSL 5 BASIC16.87■□□□□ 0.29
LIG3P49916 SLC22A20-204ENST00000530038 1673 ntBASIC16.87■□□□□ 0.29
LIG3P49916 NTNG1-208ENST00000370074 3048 ntTSL 1 (best) BASIC16.87■□□□□ 0.29
LIG3P49916 DMTN-204ENST00000415253 2394 ntTSL 5 BASIC16.87■□□□□ 0.29
LIG3P49916 ASIC4-202ENST00000358078 2741 ntAPPRIS ALT2 TSL 5 BASIC16.87■□□□□ 0.29
LIG3P49916 TJP3-207ENST00000589378 3068 ntAPPRIS ALT2 TSL 2 BASIC16.87■□□□□ 0.29
LIG3P49916 FSTL3-206ENST00000592947 2144 ntTSL 1 (best) BASIC16.87■□□□□ 0.29
LIG3P49916 TSPAN4-205ENST00000397406 1426 ntAPPRIS P1 TSL 1 (best) BASIC16.87■□□□□ 0.29
LIG3P49916 KCNQ4-201ENST00000347132 4099 ntAPPRIS P2 TSL 1 (best) BASIC16.86■□□□□ 0.29
LIG3P49916 SLC35C2-204ENST00000372230 2246 ntAPPRIS P1 TSL 1 (best) BASIC16.86■□□□□ 0.29
LIG3P49916 CDKN2AIP-201ENST00000302350 2646 ntTSL 2 BASIC16.86■□□□□ 0.29
Retrieved 100 of 98,524 protein–RNA pairs in 72 ms