Protein–RNA interactions for Protein: P39060

COL18A1, Collagen alpha-1(XVIII) chain, humanhuman

Predictions only

Length 1,754 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
COL18A1P39060 LINC00612-201ENST00000538094 2213 ntTSL 2 BASIC20.56■□□□□ 0.88
COL18A1P39060 TCP1-201ENST00000321394 2499 ntAPPRIS P1 TSL 1 (best) BASIC20.56■□□□□ 0.88
COL18A1P39060 MAGEA9-201ENST00000243314 1814 ntAPPRIS P1 TSL 1 (best) BASIC20.56■□□□□ 0.88
COL18A1P39060 CMKLR1-206ENST00000552995 1890 ntAPPRIS P3 TSL 1 (best) BASIC20.55■□□□□ 0.88
COL18A1P39060 SLC3A2-203ENST00000377890 2161 ntTSL 1 (best) BASIC20.55■□□□□ 0.88
COL18A1P39060 AC011676.5-201ENST00000624864 2660 ntBASIC20.55■□□□□ 0.88
COL18A1P39060 JAKMIP1-202ENST00000409021 2975 ntTSL 1 (best) BASIC20.55■□□□□ 0.88
COL18A1P39060 HSD17B6-201ENST00000322165 1512 ntAPPRIS P1 TSL 1 (best) BASIC20.55■□□□□ 0.88
COL18A1P39060 C21orf33-202ENST00000348499 1506 ntTSL 1 (best) BASIC20.55■□□□□ 0.88
COL18A1P39060 UGGT2-204ENST00000397618 1547 ntTSL 1 (best) BASIC20.55■□□□□ 0.88
COL18A1P39060 PFDN6-204ENST00000395131 884 ntAPPRIS P1 TSL 1 (best) BASIC20.55■□□□□ 0.88
COL18A1P39060 C14orf132-202ENST00000553782 536 ntTSL 4 BASIC20.55■□□□□ 0.88
COL18A1P39060 LINC01669-205ENST00000624561 713 ntTSL 1 (best) BASIC20.55■□□□□ 0.88
COL18A1P39060 PLEKHB2-211ENST00000628582 1297 ntTSL 2 BASIC20.55■□□□□ 0.88
COL18A1P39060 HHATL-205ENST00000441594 1865 ntAPPRIS P1 TSL 1 (best) BASIC20.55■□□□□ 0.88
COL18A1P39060 PLEKHG6-203ENST00000396988 2963 ntAPPRIS P1 TSL 2 BASIC20.55■□□□□ 0.88
COL18A1P39060 AMT-224ENST00000635808 1610 ntTSL 5 BASIC20.55■□□□□ 0.88
COL18A1P39060 STX17-205ENST00000525640 2523 ntAPPRIS P1 TSL 2 BASIC20.55■□□□□ 0.88
COL18A1P39060 CHRNB1-201ENST00000306071 2557 ntAPPRIS P1 TSL 1 (best) BASIC20.55■□□□□ 0.88
COL18A1P39060 DAND5-202ENST00000585548 1731 ntTSL 1 (best) BASIC20.55■□□□□ 0.88
COL18A1P39060 FAN1-207ENST00000565466 2304 ntTSL 2 BASIC20.55■□□□□ 0.88
COL18A1P39060 ZSWIM8-AS1-201ENST00000456638 1460 ntTSL 1 (best) BASIC20.55■□□□□ 0.88
COL18A1P39060 SPATA21-205ENST00000540400 1773 ntAPPRIS ALT2 TSL 1 (best) BASIC20.55■□□□□ 0.88
COL18A1P39060 AC004890.2-201ENST00000426347 2419 ntTSL 5 BASIC20.55■□□□□ 0.88
COL18A1P39060 PIP4K2C-207ENST00000550465 1532 ntTSL 2 BASIC20.55■□□□□ 0.88
COL18A1P39060 FOXP4-AS1-203ENST00000439386 404 ntTSL 3 BASIC20.54■□□□□ 0.88
COL18A1P39060 AP000438.1-201ENST00000543624 749 ntTSL 3 BASIC20.54■□□□□ 0.88
COL18A1P39060 LINC01229-204ENST00000568751 720 ntTSL 3 BASIC20.54■□□□□ 0.88
COL18A1P39060 AC006064.4-201ENST00000602946 422 ntTSL 2 BASIC20.54■□□□□ 0.88
COL18A1P39060 SPCS2P2-201ENST00000603270 608 ntBASIC20.54■□□□□ 0.88
COL18A1P39060 C17orf50-202ENST00000604830 477 ntTSL 3 BASIC20.54■□□□□ 0.88
COL18A1P39060 AP001002.3-201ENST00000623482 206 ntBASIC20.54■□□□□ 0.88
COL18A1P39060 MEF2C-227ENST00000626391 1182 ntTSL 1 (best) BASIC20.54■□□□□ 0.88
COL18A1P39060 MEF2C-231ENST00000628656 1254 ntTSL 1 (best) BASIC20.54■□□□□ 0.88
COL18A1P39060 AC069224.1-201ENST00000566372 1715 ntBASIC20.54■□□□□ 0.88
COL18A1P39060 EPB41-205ENST00000373797 2402 ntTSL 1 (best) BASIC20.54■□□□□ 0.88
COL18A1P39060 NADK-201ENST00000341426 3235 ntAPPRIS P3 TSL 2 BASIC20.54■□□□□ 0.88
COL18A1P39060 HARS-205ENST00000457527 1896 ntTSL 1 (best) BASIC20.54■□□□□ 0.88
COL18A1P39060 SEPT8-204ENST00000378699 2289 ntTSL 5 BASIC20.54■□□□□ 0.88
COL18A1P39060 LRRC59-203ENST00000576448 1531 ntBASIC20.54■□□□□ 0.88
COL18A1P39060 BANP-223ENST00000538234 2372 ntAPPRIS P1 TSL 1 (best) BASIC20.54■□□□□ 0.88
COL18A1P39060 BRSK2-201ENST00000308219 4089 ntAPPRIS P3 TSL 1 (best) BASIC20.54■□□□□ 0.88
COL18A1P39060 ANAPC11-202ENST00000357385 881 ntTSL 1 (best) BASIC20.54■□□□□ 0.88
COL18A1P39060 GAD1-203ENST00000375272 1252 ntTSL 1 (best) BASIC20.54■□□□□ 0.88
COL18A1P39060 AC104457.1-201ENST00000401024 814 ntBASIC20.54■□□□□ 0.88
COL18A1P39060 SNHG17-201ENST00000413755 648 ntTSL 3 BASIC20.54■□□□□ 0.88
COL18A1P39060 LINC02028-203ENST00000443776 453 ntTSL 3 BASIC20.54■□□□□ 0.88
COL18A1P39060 DNAJC27-AS1-207ENST00000451291 488 ntTSL 3 BASIC20.54■□□□□ 0.88
COL18A1P39060 RN7SL769P-201ENST00000469386 295 ntBASIC20.54■□□□□ 0.88
COL18A1P39060 AC092944.1-202ENST00000487238 483 ntTSL 4 BASIC20.54■□□□□ 0.88
COL18A1P39060 AC093879.1-201ENST00000508959 1176 ntTSL 2 BASIC20.54■□□□□ 0.88
COL18A1P39060 AC092506.1-204ENST00000634888 1066 ntTSL 5 BASIC20.54■□□□□ 0.88
COL18A1P39060 LINC01672-205ENST00000635092 633 ntTSL 5 BASIC20.54■□□□□ 0.88
COL18A1P39060 BX088651.4-201ENST00000435586 2579 ntTSL 2 BASIC20.54■□□□□ 0.88
COL18A1P39060 DYNC1LI2-203ENST00000443351 1502 ntTSL 2 BASIC20.53■□□□□ 0.88
COL18A1P39060 NKIRAS1-203ENST00000415901 1644 ntAPPRIS ALT1 TSL 5 BASIC20.53■□□□□ 0.88
COL18A1P39060 RCC1-202ENST00000373832 2424 ntAPPRIS P1 TSL 1 (best) BASIC20.53■□□□□ 0.88
COL18A1P39060 ANP32A-203ENST00000465139 2440 ntAPPRIS P2 TSL 1 (best) BASIC20.53■□□□□ 0.88
COL18A1P39060 TMEM141-201ENST00000290079 768 ntAPPRIS P1 TSL 1 (best) BASIC20.53■□□□□ 0.88
COL18A1P39060 RPL35A-205ENST00000448864 549 ntAPPRIS P1 TSL 1 (best) BASIC20.53■□□□□ 0.88
COL18A1P39060 AC083949.1-202ENST00000458490 552 ntTSL 3 BASIC20.53■□□□□ 0.88
COL18A1P39060 ATP6V1G2-210ENST00000483251 662 ntTSL 3 BASIC20.53■□□□□ 0.88
COL18A1P39060 AC100850.1-201ENST00000506768 649 ntBASIC20.53■□□□□ 0.88
COL18A1P39060 COX5BP1-201ENST00000507622 393 ntBASIC20.53■□□□□ 0.88
COL18A1P39060 ANO1-AS1-201ENST00000524987 646 ntTSL 3 BASIC20.53■□□□□ 0.88
COL18A1P39060 ZNF385A-213ENST00000551771 1111 ntTSL 1 (best) BASIC20.53■□□□□ 0.88
COL18A1P39060 AC136428.1-201ENST00000569103 349 ntAPPRIS P1 TSL 5 BASIC20.53■□□□□ 0.88
COL18A1P39060 AC008132.1-202ENST00000342005 1389 ntBASIC20.53■□□□□ 0.88
COL18A1P39060 TTC13-202ENST00000366662 3112 ntAPPRIS ALT2 TSL 1 (best) BASIC20.53■□□□□ 0.88
COL18A1P39060 AC080080.1-201ENST00000625121 2420 ntBASIC20.53■□□□□ 0.88
COL18A1P39060 NME7-201ENST00000367811 1642 ntAPPRIS P3 TSL 1 (best) BASIC20.53■□□□□ 0.88
COL18A1P39060 ETV4-211ENST00000591713 1727 ntAPPRIS P1 TSL 1 (best) BASIC20.53■□□□□ 0.88
COL18A1P39060 C16orf89-201ENST00000315997 1872 ntAPPRIS P3 TSL 1 (best) BASIC20.52■□□□□ 0.88
COL18A1P39060 MGAT5B-209ENST00000569840 4492 ntAPPRIS ALT1 TSL 5 BASIC20.52■□□□□ 0.88
COL18A1P39060 SLC26A10-201ENST00000320442 2389 ntAPPRIS P1 TSL 1 (best) BASIC20.52■□□□□ 0.88
COL18A1P39060 C10orf62-201ENST00000370640 1208 ntAPPRIS P1 BASIC20.52■□□□□ 0.88
COL18A1P39060 MAPK15-203ENST00000395108 765 ntTSL 1 (best) BASIC20.52■□□□□ 0.88
COL18A1P39060 MRNIP-220ENST00000523084 1096 ntTSL 1 (best) BASIC20.52■□□□□ 0.88
COL18A1P39060 RERG-205ENST00000537647 935 ntTSL 2 BASIC20.52■□□□□ 0.88
COL18A1P39060 MSRB3-209ENST00000540804 884 ntTSL 2 BASIC20.52■□□□□ 0.88
COL18A1P39060 NAT9-222ENST00000583476 583 ntTSL 3 BASIC20.52■□□□□ 0.88
COL18A1P39060 AC244157.2-201ENST00000616239 1006 ntBASIC20.52■□□□□ 0.88
COL18A1P39060 AL021997.3-201ENST00000621053 557 ntAPPRIS P1 TSL 4 BASIC20.52■□□□□ 0.88
COL18A1P39060 AC128714.1-201ENST00000637035 887 ntBASIC20.52■□□□□ 0.88
COL18A1P39060 EDDM13-208ENST00000637802 854 ntAPPRIS P1 TSL 5 BASIC20.52■□□□□ 0.88
COL18A1P39060 C7orf33-201ENST00000307003 1354 ntAPPRIS P1 TSL 1 (best) BASIC20.52■□□□□ 0.88
COL18A1P39060 SEPT8-216ENST00000620483 4335 ntTSL 5 BASIC20.52■□□□□ 0.88
COL18A1P39060 FGF1-201ENST00000337706 1469 ntAPPRIS P1 TSL 2 BASIC20.52■□□□□ 0.88
COL18A1P39060 C1orf43-202ENST00000362076 1551 ntTSL 1 (best) BASIC20.52■□□□□ 0.88
COL18A1P39060 IFNGR1-201ENST00000367739 2139 ntAPPRIS P1 TSL 1 (best) BASIC20.52■□□□□ 0.88
COL18A1P39060 C16orf58-202ENST00000430477 2471 ntAPPRIS P2 TSL 1 (best) BASIC20.52■□□□□ 0.88
COL18A1P39060 AC022211.2-201ENST00000585075 2527 ntBASIC20.52■□□□□ 0.88
COL18A1P39060 EML3-212ENST00000494176 2901 ntTSL 2 BASIC20.52■□□□□ 0.88
COL18A1P39060 EML3-216ENST00000529309 2909 ntTSL 2 BASIC20.52■□□□□ 0.88
COL18A1P39060 SRP14-201ENST00000267884 1077 ntAPPRIS P1 TSL 1 (best) BASIC20.51■□□□□ 0.87
COL18A1P39060 B9D1-202ENST00000268841 755 ntTSL 1 (best) BASIC20.51■□□□□ 0.87
COL18A1P39060 PAK4-203ENST00000360442 2855 ntAPPRIS P1 TSL 5 BASIC20.51■□□□□ 0.87
COL18A1P39060 COL5A1-AS1-201ENST00000371813 336 ntTSL 2 BASIC20.51■□□□□ 0.87
COL18A1P39060 KCNAB2-207ENST00000378111 822 ntTSL 3 BASIC20.51■□□□□ 0.87
COL18A1P39060 METTL6-201ENST00000383789 1413 ntTSL 2 BASIC20.51■□□□□ 0.87
Retrieved 100 of 98,524 protein–RNA pairs in 30.2 ms