Protein–RNA interactions for Protein: P23560

BDNF, Brain-derived neurotrophic factor, humanhuman

Predictions only

Length 247 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
BDNFP23560 PLAGL1-211ENST00000625622 3216 ntAPPRIS P1 TSL 2 BASIC16.8■□□□□ 0.28
BDNFP23560 TMC5-202ENST00000381414 4755 ntTSL 1 (best) BASIC16.8■□□□□ 0.28
BDNFP23560 DNAJA3-201ENST00000262375 2763 ntAPPRIS P3 TSL 1 (best) BASIC16.8■□□□□ 0.28
BDNFP23560 SLC4A5-203ENST00000377632 3123 ntTSL 1 (best) BASIC16.8■□□□□ 0.28
BDNFP23560 MAP4K4-205ENST00000350878 7640 ntTSL 1 (best) BASIC16.8■□□□□ 0.28
BDNFP23560 TAF3-201ENST00000344293 4872 ntAPPRIS P1 TSL 1 (best) BASIC16.8■□□□□ 0.28
BDNFP23560 KDM6A-211ENST00000536777 5633 ntTSL 1 (best) BASIC16.8■□□□□ 0.28
BDNFP23560 CARD14-202ENST00000570421 2607 ntTSL 1 (best) BASIC16.8■□□□□ 0.28
BDNFP23560 TMEM229B-201ENST00000357461 4068 ntAPPRIS P1 TSL 2 BASIC16.8■□□□□ 0.28
BDNFP23560 CRYM-201ENST00000219599 1471 ntAPPRIS P1 TSL 1 (best) BASIC16.8■□□□□ 0.28
BDNFP23560 SERPINF2-203ENST00000450523 1462 ntTSL 2 BASIC16.8■□□□□ 0.28
BDNFP23560 PSME3-202ENST00000441946 2944 ntTSL 2 BASIC16.8■□□□□ 0.28
BDNFP23560 RHOC-201ENST00000285735 2199 ntAPPRIS P1 TSL 2 BASIC16.79■□□□□ 0.28
BDNFP23560 SLC9A2-201ENST00000233969 5410 ntAPPRIS P1 TSL 1 (best) BASIC16.79■□□□□ 0.28
BDNFP23560 NFIC-202ENST00000395111 1755 ntTSL 2 BASIC16.79■□□□□ 0.28
BDNFP23560 TMEM150A-203ENST00000409668 1776 ntAPPRIS P1 TSL 2 BASIC16.79■□□□□ 0.28
BDNFP23560 C15orf38-AP3S2-201ENST00000398333 2439 ntAPPRIS P1 TSL 2 BASIC16.79■□□□□ 0.28
BDNFP23560 AL391005.1-201ENST00000623953 2435 ntBASIC16.79■□□□□ 0.28
BDNFP23560 WDR45-202ENST00000356463 1688 ntTSL 1 (best) BASIC16.79■□□□□ 0.28
BDNFP23560 CYB5R1-201ENST00000367249 1651 ntAPPRIS P1 TSL 1 (best) BASIC16.79■□□□□ 0.28
BDNFP23560 MGRN1-201ENST00000262370 3968 ntAPPRIS P3 TSL 1 (best) BASIC16.79■□□□□ 0.28
BDNFP23560 PRPS2-203ENST00000398491 1348 ntAPPRIS ALT1 TSL 1 (best) BASIC16.79■□□□□ 0.28
BDNFP23560 RPS28-203ENST00000600659 1326 ntAPPRIS P1 TSL 1 (best) BASIC16.79■□□□□ 0.28
BDNFP23560 MINDY1-202ENST00000361738 1961 ntTSL 2 BASIC16.79■□□□□ 0.28
BDNFP23560 LITAF-209ENST00000571688 2632 ntAPPRIS P1 TSL 1 (best) BASIC16.79■□□□□ 0.28
BDNFP23560 CUX1-213ENST00000549414 4452 ntAPPRIS ALT2 TSL 5 BASIC16.79■□□□□ 0.28
BDNFP23560 TM4SF19-201ENST00000273695 1022 ntAPPRIS P1 TSL 1 (best) BASIC16.79■□□□□ 0.28
BDNFP23560 NTMT1-201ENST00000372480 852 ntAPPRIS P1 TSL 3 BASIC16.79■□□□□ 0.28
BDNFP23560 NUDT1-205ENST00000397048 783 ntTSL 1 (best) BASIC16.79■□□□□ 0.28
BDNFP23560 HRAS-202ENST00000397594 1099 ntTSL 2 BASIC16.79■□□□□ 0.28
BDNFP23560 BMP7-AS1-201ENST00000445956 436 ntTSL 2 BASIC16.79■□□□□ 0.28
BDNFP23560 HSPB7-207ENST00000487046 844 ntAPPRIS ALT1 TSL 1 (best) BASIC16.79■□□□□ 0.28
BDNFP23560 AC093904.3-201ENST00000492300 368 ntTSL 2 BASIC16.79■□□□□ 0.28
BDNFP23560 S100A6-205ENST00000496817 673 ntAPPRIS P1 TSL 2 BASIC16.79■□□□□ 0.28
BDNFP23560 AC093004.1-201ENST00000508850 424 ntBASIC16.79■□□□□ 0.28
BDNFP23560 SNHG6-201ENST00000520348 648 ntTSL 2 BASIC16.79■□□□□ 0.28
BDNFP23560 LINC01605-204ENST00000522718 1093 ntTSL 3 BASIC16.79■□□□□ 0.28
BDNFP23560 NEIL2-207ENST00000528323 998 ntTSL 2 BASIC16.79■□□□□ 0.28
BDNFP23560 AC129507.1-201ENST00000570711 1013 ntTSL 2 BASIC16.79■□□□□ 0.28
BDNFP23560 CHCHD2P3-201ENST00000603038 451 ntBASIC16.79■□□□□ 0.28
BDNFP23560 EIF6-209ENST00000621148 1054 ntAPPRIS P1 TSL 3 BASIC16.79■□□□□ 0.28
BDNFP23560 AC025048.6-201ENST00000634326 1161 ntBASIC16.79■□□□□ 0.28
BDNFP23560 C11orf53-203ENST00000637637 1049 ntTSL 1 (best) BASIC16.79■□□□□ 0.28
BDNFP23560 SLK-202ENST00000369755 7766 ntAPPRIS P1 TSL 1 (best) BASIC16.79■□□□□ 0.28
BDNFP23560 GABRA5-202ENST00000355395 2183 ntAPPRIS P1 TSL 5 BASIC16.79■□□□□ 0.28
BDNFP23560 SPINT1-202ENST00000562057 2456 ntAPPRIS ALT2 TSL 1 (best) BASIC16.79■□□□□ 0.28
BDNFP23560 ZNF514-202ENST00000411425 2755 ntAPPRIS P1 TSL 1 (best) BASIC16.79■□□□□ 0.28
BDNFP23560 CRH-201ENST00000276571 1543 ntAPPRIS P1 TSL 1 (best) BASIC16.79■□□□□ 0.28
BDNFP23560 TM6SF2-201ENST00000389363 1505 ntAPPRIS P1 TSL 1 (best) BASIC16.79■□□□□ 0.28
BDNFP23560 BCL11B-202ENST00000357195 7559 ntAPPRIS P4 TSL 1 (best) BASIC16.79■□□□□ 0.28
BDNFP23560 LSMEM2-201ENST00000316436 1494 ntAPPRIS P1 TSL 1 (best) BASIC16.79■□□□□ 0.28
BDNFP23560 VASH1-203ENST00000554237 1462 ntTSL 1 (best) BASIC16.79■□□□□ 0.28
BDNFP23560 DAB2IP-205ENST00000408936 6784 ntAPPRIS ALT2 TSL 5 BASIC16.79■□□□□ 0.28
BDNFP23560 NIPA2-201ENST00000337451 3233 ntAPPRIS P1 TSL 5 BASIC16.79■□□□□ 0.28
BDNFP23560 VASP-201ENST00000245932 2305 ntAPPRIS P1 TSL 1 (best) BASIC16.79■□□□□ 0.28
BDNFP23560 IL11RA-202ENST00000441545 1700 ntAPPRIS P1 TSL 5 BASIC16.79■□□□□ 0.28
BDNFP23560 AC069224.1-201ENST00000566372 1715 ntBASIC16.79■□□□□ 0.28
BDNFP23560 TRMT1-203ENST00000437766 2263 ntAPPRIS P3 TSL 1 (best) BASIC16.79■□□□□ 0.28
BDNFP23560 SH3BP4-201ENST00000344528 5044 ntAPPRIS P1 TSL 1 (best) BASIC16.78■□□□□ 0.28
BDNFP23560 ARFGAP1-201ENST00000353546 2776 ntAPPRIS P4 TSL 1 (best) BASIC16.78■□□□□ 0.28
BDNFP23560 LAT2-204ENST00000398475 2453 ntAPPRIS P2 TSL 1 (best) BASIC16.78■□□□□ 0.28
BDNFP23560 AC011477.6-201ENST00000604980 1927 ntBASIC16.78■□□□□ 0.28
BDNFP23560 BHLHE41-201ENST00000242728 3837 ntAPPRIS P1 TSL 1 (best) BASIC16.78■□□□□ 0.28
BDNFP23560 KCNJ12-201ENST00000331718 2198 ntAPPRIS P1 TSL 1 (best) BASIC16.78■□□□□ 0.28
BDNFP23560 LRRC47-201ENST00000378251 4310 ntAPPRIS P1 TSL 1 (best) BASIC16.78■□□□□ 0.28
BDNFP23560 LIMS2-208ENST00000410011 2335 ntAPPRIS ALT1 TSL 1 (best) BASIC16.78■□□□□ 0.28
BDNFP23560 YBEY-202ENST00000339195 890 ntTSL 1 (best) BASIC16.78■□□□□ 0.28
BDNFP23560 ACTA1-201ENST00000366683 1122 ntTSL 5 BASIC16.78■□□□□ 0.28
BDNFP23560 YBEY-203ENST00000397691 764 ntAPPRIS P1 TSL 3 BASIC16.78■□□□□ 0.28
BDNFP23560 RCHY1-210ENST00000513257 759 ntTSL 1 (best) BASIC16.78■□□□□ 0.28
BDNFP23560 PNOC-204ENST00000522209 1007 ntTSL 2 BASIC16.78■□□□□ 0.28
BDNFP23560 RNASEK-C17orf49-201ENST00000547302 900 ntAPPRIS P1 TSL 5 BASIC16.78■□□□□ 0.28
BDNFP23560 HNRNPUP1-201ENST00000554987 333 ntBASIC16.78■□□□□ 0.28
BDNFP23560 VAT1-205ENST00000587173 1174 ntTSL 2 BASIC16.78■□□□□ 0.28
BDNFP23560 AC027307.3-201ENST00000594262 1100 ntBASIC16.78■□□□□ 0.28
BDNFP23560 AC010735.2-201ENST00000607970 584 ntTSL 4 BASIC16.78■□□□□ 0.28
BDNFP23560 DBI-211ENST00000627093 554 ntTSL 1 (best) BASIC16.78■□□□□ 0.28
BDNFP23560 ZMYM3-202ENST00000373978 1511 ntTSL 5 BASIC16.78■□□□□ 0.28
BDNFP23560 KRT76-201ENST00000332411 2529 ntAPPRIS P1 TSL 1 (best) BASIC16.78■□□□□ 0.28
BDNFP23560 SUSD4-202ENST00000343846 3480 ntAPPRIS P1 TSL 2 BASIC16.78■□□□□ 0.28
BDNFP23560 PKP4-AS1-203ENST00000629904 1951 ntTSL 5 BASIC16.78■□□□□ 0.28
BDNFP23560 APH1A-204ENST00000414276 1718 ntTSL 2 BASIC16.78■□□□□ 0.28
BDNFP23560 CDC14C-201ENST00000428251 1719 ntBASIC16.78■□□□□ 0.28
BDNFP23560 ACAT2-201ENST00000367048 3180 ntAPPRIS P1 TSL 1 (best) BASIC16.78■□□□□ 0.28
BDNFP23560 LCK-201ENST00000333070 2166 ntTSL 1 (best) BASIC16.78■□□□□ 0.28
BDNFP23560 BMP1-201ENST00000306349 2626 ntTSL 1 (best) BASIC16.78■□□□□ 0.28
BDNFP23560 TPD52L2-201ENST00000217121 2362 ntTSL 2 BASIC16.78■□□□□ 0.28
BDNFP23560 GEM-202ENST00000396194 2103 ntAPPRIS P1 TSL 1 (best) BASIC16.78■□□□□ 0.28
BDNFP23560 TUBGCP6-204ENST00000439308 6078 ntTSL 1 (best) BASIC16.78■□□□□ 0.28
BDNFP23560 FAM57B-202ENST00000380495 2313 ntAPPRIS P1 TSL 1 (best) BASIC16.78■□□□□ 0.28
BDNFP23560 AKAP9-205ENST00000394564 1356 ntTSL 1 (best) BASIC16.77■□□□□ 0.28
BDNFP23560 SLC7A15P-201ENST00000424028 1363 ntBASIC16.77■□□□□ 0.28
BDNFP23560 GRIN2C-202ENST00000347612 2929 ntAPPRIS ALT2 TSL 1 (best) BASIC16.77■□□□□ 0.28
BDNFP23560 MYLK3-202ENST00000536476 1795 ntAPPRIS ALT2 TSL 2 BASIC16.77■□□□□ 0.28
BDNFP23560 MYH14-203ENST00000425460 6811 ntAPPRIS P3 TSL 5 BASIC16.77■□□□□ 0.28
BDNFP23560 PDE6G-204ENST00000573076 1505 ntTSL 1 (best) BASIC16.77■□□□□ 0.28
BDNFP23560 AP003680.1-201ENST00000598970 3660 ntBASIC16.77■□□□□ 0.28
BDNFP23560 GPR89B-201ENST00000314163 1934 ntAPPRIS P1 TSL 1 (best) BASIC16.77■□□□□ 0.28
BDNFP23560 LST1-202ENST00000303757 604 ntTSL 1 (best) BASIC16.77■□□□□ 0.28
BDNFP23560 ISCA1-201ENST00000311534 813 ntTSL 2 BASIC16.77■□□□□ 0.28
Retrieved 100 of 98,524 protein–RNA pairs in 31.9 ms