Protein–RNA interactions for Protein: P17096

HMGA1, High mobility group protein HMG-I/HMG-Y, humanhuman

Known RBP Predictions only

Length 107 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
HMGA1P17096 FADS2-202ENST00000278840 3630 ntAPPRIS P1 TSL 1 (best) BASIC16.41■□□□□ 0.22
HMGA1P17096 CHTOP-203ENST00000368690 2165 ntAPPRIS ALT1 TSL 1 (best) BASIC16.41■□□□□ 0.22
HMGA1P17096 NOMO1-208ENST00000620755 3921 ntAPPRIS ALT2 TSL 1 (best) BASIC16.41■□□□□ 0.22
HMGA1P17096 MAPK8IP3-201ENST00000250894 5661 ntAPPRIS P3 TSL 1 (best) BASIC16.41■□□□□ 0.22
HMGA1P17096 AP5B1-201ENST00000532090 4811 ntAPPRIS P1 TSL 1 (best) BASIC16.41■□□□□ 0.22
HMGA1P17096 SPRYD7-202ENST00000378195 3086 ntTSL 2 BASIC16.41■□□□□ 0.22
HMGA1P17096 TRIM13-201ENST00000356017 1637 ntAPPRIS ALT1 TSL 1 (best) BASIC16.41■□□□□ 0.22
HMGA1P17096 PRKCD-201ENST00000330452 2680 ntAPPRIS P1 TSL 1 (best) BASIC16.41■□□□□ 0.22
HMGA1P17096 ZMYM3-202ENST00000373978 1511 ntTSL 5 BASIC16.4■□□□□ 0.22
HMGA1P17096 BCS1L-203ENST00000392110 1525 ntAPPRIS P1 TSL 2 BASIC16.4■□□□□ 0.22
HMGA1P17096 MPP3-201ENST00000398389 2182 ntAPPRIS P1 TSL 1 (best) BASIC16.4■□□□□ 0.22
HMGA1P17096 AC136759.1-201ENST00000534201 2163 ntTSL 2 BASIC16.4■□□□□ 0.22
HMGA1P17096 C16orf89-201ENST00000315997 1872 ntAPPRIS P3 TSL 1 (best) BASIC16.4■□□□□ 0.22
HMGA1P17096 C1QTNF1-202ENST00000339142 3100 ntAPPRIS P1 TSL 5 BASIC16.4■□□□□ 0.22
HMGA1P17096 APH1A-204ENST00000414276 1718 ntTSL 2 BASIC16.4■□□□□ 0.22
HMGA1P17096 TCF3-212ENST00000588136 2658 ntAPPRIS ALT2 TSL 2 BASIC16.4■□□□□ 0.22
HMGA1P17096 DRD5P1-201ENST00000456605 1438 ntBASIC16.4■□□□□ 0.22
HMGA1P17096 NCAN-201ENST00000252575 6387 ntAPPRIS P1 TSL 1 (best) BASIC16.4■□□□□ 0.22
HMGA1P17096 ANKRD19P-201ENST00000338192 862 ntBASIC16.4■□□□□ 0.22
HMGA1P17096 ADAMTSL1-208ENST00000380570 931 ntTSL 1 (best) BASIC16.4■□□□□ 0.22
HMGA1P17096 AL133267.1-201ENST00000398220 340 ntBASIC16.4■□□□□ 0.22
HMGA1P17096 C1orf210-201ENST00000423420 629 ntAPPRIS P1 TSL 3 BASIC16.4■□□□□ 0.22
HMGA1P17096 IQCF3-202ENST00000440739 505 ntAPPRIS P1 TSL 2 BASIC16.4■□□□□ 0.22
HMGA1P17096 TMEM147-AS1-201ENST00000444728 487 ntTSL 3 BASIC16.4■□□□□ 0.22
HMGA1P17096 CXorf40A-211ENST00000450602 1204 ntAPPRIS P3 TSL 3 BASIC16.4■□□□□ 0.22
HMGA1P17096 AC093904.1-201ENST00000474561 455 ntTSL 3 BASIC16.4■□□□□ 0.22
HMGA1P17096 AC026410.3-201ENST00000514280 936 ntBASIC16.4■□□□□ 0.22
HMGA1P17096 CCKBR-202ENST00000525014 792 ntTSL 4 BASIC16.4■□□□□ 0.22
HMGA1P17096 ZNF7-206ENST00000528130 1134 ntTSL 5 BASIC16.4■□□□□ 0.22
HMGA1P17096 TDH-203ENST00000531764 1110 ntBASIC16.4■□□□□ 0.22
HMGA1P17096 GCHFR-206ENST00000561160 572 ntTSL 3 BASIC16.4■□□□□ 0.22
HMGA1P17096 AC010491.1-203ENST00000564167 638 ntTSL 2 BASIC16.4■□□□□ 0.22
HMGA1P17096 AC009133.2-201ENST00000566537 547 ntTSL 4 BASIC16.4■□□□□ 0.22
HMGA1P17096 SMCO4-206ENST00000596676 180 ntAPPRIS P1 BASIC16.4■□□□□ 0.22
HMGA1P17096 FAM171B-202ENST00000612606 940 ntTSL 5 BASIC16.4■□□□□ 0.22
HMGA1P17096 HIST1H3I-201ENST00000616365 411 ntAPPRIS P1 BASIC16.4■□□□□ 0.22
HMGA1P17096 MIR6775-201ENST00000617557 69 ntBASIC16.4■□□□□ 0.22
HMGA1P17096 Metazoa_SRP.80-201ENST00000619894 320 ntBASIC16.4■□□□□ 0.22
HMGA1P17096 WNT11-204ENST00000621122 789 ntTSL 5 BASIC16.4■□□□□ 0.22
HMGA1P17096 LATS1-202ENST00000392273 2567 ntTSL 1 (best) BASIC16.4■□□□□ 0.22
HMGA1P17096 BRPF1-203ENST00000424362 4712 ntAPPRIS ALT1 TSL 1 (best) BASIC16.4■□□□□ 0.22
HMGA1P17096 BBS2-218ENST00000568104 2623 ntTSL 5 BASIC16.4■□□□□ 0.22
HMGA1P17096 TMED1-201ENST00000214869 1340 ntAPPRIS P1 TSL 1 (best) BASIC16.4■□□□□ 0.22
HMGA1P17096 HACD3-202ENST00000442729 1332 ntTSL 2 BASIC16.4■□□□□ 0.22
HMGA1P17096 NR2C1-203ENST00000393101 1822 ntTSL 1 (best) BASIC16.4■□□□□ 0.22
HMGA1P17096 AC112504.1-201ENST00000623415 1841 ntBASIC16.4■□□□□ 0.22
HMGA1P17096 APBA2-207ENST00000558402 4031 ntAPPRIS P1 TSL 5 BASIC16.4■□□□□ 0.22
HMGA1P17096 GOLM1-203ENST00000388712 3046 ntAPPRIS P2 TSL 1 (best) BASIC16.4■□□□□ 0.22
HMGA1P17096 PLA2G12A-201ENST00000243501 5226 ntAPPRIS P2 TSL 1 (best) BASIC16.4■□□□□ 0.22
HMGA1P17096 BLK-205ENST00000529894 2017 ntTSL 5 BASIC16.4■□□□□ 0.22
HMGA1P17096 CNTNAP3B-201ENST00000276974 3240 ntTSL 5 BASIC16.4■□□□□ 0.22
HMGA1P17096 RUBCNL-203ENST00000378787 2731 ntTSL 2 BASIC16.39■□□□□ 0.22
HMGA1P17096 AL138752.2-201ENST00000540557 2591 ntAPPRIS P1 TSL 5 BASIC16.39■□□□□ 0.22
HMGA1P17096 ALOX12-AS1-201ENST00000399540 1730 ntTSL 2 BASIC16.39■□□□□ 0.21
HMGA1P17096 AC091980.2-201ENST00000619056 2775 ntAPPRIS P1 BASIC16.39■□□□□ 0.21
HMGA1P17096 COLEC11-209ENST00000418971 1595 ntTSL 2 BASIC16.39■□□□□ 0.21
HMGA1P17096 MAP7-203ENST00000438100 2633 ntAPPRIS ALT2 TSL 2 BASIC16.39■□□□□ 0.21
HMGA1P17096 XKR6-203ENST00000416569 3382 ntAPPRIS P1 TSL 1 (best) BASIC16.39■□□□□ 0.21
HMGA1P17096 TCEA2-203ENST00000361317 1427 ntTSL 2 BASIC16.39■□□□□ 0.21
HMGA1P17096 SLC6A9-202ENST00000360584 2330 ntTSL 1 (best) BASIC16.39■□□□□ 0.21
HMGA1P17096 NCR1-201ENST00000291890 1155 ntAPPRIS P3 TSL 5 BASIC16.39■□□□□ 0.21
HMGA1P17096 NCR1-202ENST00000338835 973 ntAPPRIS ALT2 TSL 1 (best) BASIC16.39■□□□□ 0.21
HMGA1P17096 NCR1-203ENST00000350790 739 ntTSL 1 (best) BASIC16.39■□□□□ 0.21
HMGA1P17096 C14orf178-201ENST00000355883 642 ntAPPRIS P3 TSL 5 BASIC16.39■□□□□ 0.21
HMGA1P17096 LINC01759-201ENST00000412639 985 ntTSL 3 BASIC16.39■□□□□ 0.21
HMGA1P17096 AC243836.1-201ENST00000416696 438 ntTSL 3 BASIC16.39■□□□□ 0.21
HMGA1P17096 GNB3-202ENST00000435982 1110 ntAPPRIS ALT1 TSL 1 (best) BASIC16.39■□□□□ 0.21
HMGA1P17096 AL691459.1-201ENST00000438589 407 ntTSL 3 BASIC16.39■□□□□ 0.21
HMGA1P17096 KCNQ1DN-201ENST00000441418 1093 ntTSL 1 (best) BASIC16.39■□□□□ 0.21
HMGA1P17096 AC097717.1-202ENST00000457577 740 ntTSL 3 BASIC16.39■□□□□ 0.21
HMGA1P17096 MTX3-202ENST00000512528 1280 ntAPPRIS P1 TSL 1 (best) BASIC16.39■□□□□ 0.21
HMGA1P17096 OMP-201ENST00000529803 492 ntAPPRIS P1 BASIC16.39■□□□□ 0.21
HMGA1P17096 AP003385.5-201ENST00000533876 555 ntTSL 4 BASIC16.39■□□□□ 0.21
HMGA1P17096 TPD52L1-214ENST00000534199 811 ntTSL 2 BASIC16.39■□□□□ 0.21
HMGA1P17096 TROAP-207ENST00000548311 623 ntAPPRIS ALT2 TSL 2 BASIC16.39■□□□□ 0.21
HMGA1P17096 NAA38-206ENST00000576384 424 ntTSL 2 BASIC16.39■□□□□ 0.21
HMGA1P17096 MIF4GD-206ENST00000579119 856 ntTSL 3 BASIC16.39■□□□□ 0.21
HMGA1P17096 AC015910.1-201ENST00000579400 975 ntBASIC16.39■□□□□ 0.21
HMGA1P17096 PIGL-212ENST00000581006 554 ntTSL 4 BASIC16.39■□□□□ 0.21
HMGA1P17096 AC079336.1-201ENST00000583156 420 ntTSL 3 BASIC16.39■□□□□ 0.21
HMGA1P17096 AC243829.4-204ENST00000616926 1115 ntTSL 5 BASIC16.39■□□□□ 0.21
HMGA1P17096 AC005252.2-201ENST00000624630 1141 ntBASIC16.39■□□□□ 0.21
HMGA1P17096 LINC01759-203ENST00000635271 888 ntTSL 5 BASIC16.39■□□□□ 0.21
HMGA1P17096 FARP1-242ENST00000627049 5103 ntTSL 5 BASIC16.39■□□□□ 0.21
HMGA1P17096 DOK5-202ENST00000395939 1453 ntTSL 1 (best) BASIC16.39■□□□□ 0.21
HMGA1P17096 ASAP3-212ENST00000618240 2226 ntTSL 5 BASIC16.39■□□□□ 0.21
HMGA1P17096 PCDH7-206ENST00000543491 4457 ntAPPRIS ALT2 BASIC16.39■□□□□ 0.21
HMGA1P17096 ITPK1-210ENST00000556603 3174 ntAPPRIS P1 TSL 1 (best) BASIC16.39■□□□□ 0.21
HMGA1P17096 TAPBP-233ENST00000426633 1888 ntAPPRIS P4 TSL 1 (best) BASIC16.39■□□□□ 0.21
HMGA1P17096 SPDEF-202ENST00000544425 1866 ntAPPRIS ALT1 TSL 2 BASIC16.39■□□□□ 0.21
HMGA1P17096 AATK-201ENST00000326724 5257 ntAPPRIS P3 TSL 5 BASIC16.39■□□□□ 0.21
HMGA1P17096 MUTYH-209ENST00000448481 1706 ntTSL 1 (best) BASIC16.39■□□□□ 0.21
HMGA1P17096 FIGNL2-202ENST00000618634 4812 ntAPPRIS P1 TSL 5 BASIC16.39■□□□□ 0.21
HMGA1P17096 GEM-202ENST00000396194 2103 ntAPPRIS P1 TSL 1 (best) BASIC16.39■□□□□ 0.21
HMGA1P17096 SLC22A12-205ENST00000473690 2522 ntTSL 2 BASIC16.39■□□□□ 0.21
HMGA1P17096 CD24-204ENST00000619133 2513 ntAPPRIS P3 TSL 2 BASIC16.39■□□□□ 0.21
HMGA1P17096 GCH1-204ENST00000491895 2943 ntAPPRIS P1 TSL 1 (best) BASIC16.39■□□□□ 0.21
HMGA1P17096 MIB2-217ENST00000504599 3311 ntAPPRIS ALT2 TSL 2 BASIC16.39■□□□□ 0.21
HMGA1P17096 ZYG11A-202ENST00000371532 3942 ntTSL 5 BASIC16.39■□□□□ 0.21
HMGA1P17096 ZNF890P-201ENST00000422060 1352 ntTSL 2 BASIC16.38■□□□□ 0.21
Retrieved 100 of 98,524 protein–RNA pairs in 36.8 ms