Protein–RNA interactions for Protein: P02462

COL4A1, Collagen alpha-1(IV) chain, humanhuman

Predictions only

Length 1,669 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
COL4A1P02462 LINC01248-201ENST00000458264 468 ntTSL 3 BASIC19.13■□□□□ 0.65
COL4A1P02462 GCHFR-203ENST00000558670 412 ntTSL 3 BASIC19.13■□□□□ 0.65
COL4A1P02462 AL031600.1-201ENST00000563610 570 ntTSL 4 BASIC19.13■□□□□ 0.65
COL4A1P02462 MIR22HG-212ENST00000577164 931 ntTSL 4 BASIC19.13■□□□□ 0.65
COL4A1P02462 EGLN2-209ENST00000594140 991 ntTSL 2 BASIC19.13■□□□□ 0.65
COL4A1P02462 NCK1-201ENST00000288986 1937 ntAPPRIS P1 TSL 1 (best) BASIC19.13■□□□□ 0.65
COL4A1P02462 TBL2-205ENST00000432538 1573 ntTSL 2 BASIC19.13■□□□□ 0.65
COL4A1P02462 AL138799.1-201ENST00000448213 1675 ntBASIC19.13■□□□□ 0.65
COL4A1P02462 AC107871.1-202ENST00000562767 3389 ntAPPRIS P1 TSL 3 BASIC19.13■□□□□ 0.65
COL4A1P02462 CHTF18-220ENST00000631357 3555 ntAPPRIS ALT2 TSL 5 BASIC19.13■□□□□ 0.65
COL4A1P02462 FAM69C-201ENST00000343998 3671 ntAPPRIS P1 TSL 5 BASIC19.13■□□□□ 0.65
COL4A1P02462 KRT8P35-201ENST00000483942 1338 ntBASIC19.12■□□□□ 0.65
COL4A1P02462 AC025165.1-201ENST00000356672 2355 ntTSL 5 BASIC19.12■□□□□ 0.65
COL4A1P02462 MPL-201ENST00000372470 1908 ntAPPRIS P2 TSL 1 (best) BASIC19.12■□□□□ 0.65
COL4A1P02462 NPPC-201ENST00000295440 500 ntAPPRIS P1 TSL 1 (best) BASIC19.12■□□□□ 0.65
COL4A1P02462 CFLAR-203ENST00000341222 1283 ntTSL 1 (best) BASIC19.12■□□□□ 0.65
COL4A1P02462 SETD4-205ENST00000399208 1165 ntTSL 1 (best) BASIC19.12■□□□□ 0.65
COL4A1P02462 KLF2P2-201ENST00000416807 1039 ntBASIC19.12■□□□□ 0.65
COL4A1P02462 BX322559.1-201ENST00000456613 319 ntTSL 3 BASIC19.12■□□□□ 0.65
COL4A1P02462 APOPT1-207ENST00000477116 906 ntTSL 3 BASIC19.12■□□□□ 0.65
COL4A1P02462 AHRR-211ENST00000515206 462 ntTSL 5 BASIC19.12■□□□□ 0.65
COL4A1P02462 ACR-203ENST00000529621 708 ntTSL 5 BASIC19.12■□□□□ 0.65
COL4A1P02462 PAFAH1B3-202ENST00000538771 1098 ntAPPRIS P1 TSL 2 BASIC19.12■□□□□ 0.65
COL4A1P02462 AL118558.3-201ENST00000607414 1079 ntBASIC19.12■□□□□ 0.65
COL4A1P02462 MPP1-204ENST00000393531 1389 ntTSL 1 (best) BASIC19.12■□□□□ 0.65
COL4A1P02462 KRT35-201ENST00000246639 1778 ntTSL 1 (best) BASIC19.12■□□□□ 0.65
COL4A1P02462 NAT9-210ENST00000580301 1860 ntTSL 1 (best) BASIC19.12■□□□□ 0.65
COL4A1P02462 SHISA5-208ENST00000442747 2250 ntTSL 2 BASIC19.12■□□□□ 0.65
COL4A1P02462 CCDC136-212ENST00000487361 2268 ntAPPRIS ALT2 TSL 5 BASIC19.12■□□□□ 0.65
COL4A1P02462 AC079328.2-201ENST00000561241 3354 ntBASIC19.12■□□□□ 0.65
COL4A1P02462 TATDN2-201ENST00000287652 5342 ntAPPRIS P1 TSL 1 (best) BASIC19.12■□□□□ 0.65
COL4A1P02462 SUPT20HL2-201ENST00000486479 2409 ntBASIC19.12■□□□□ 0.65
COL4A1P02462 SLC2A6-201ENST00000371897 2301 ntTSL 2 BASIC19.12■□□□□ 0.65
COL4A1P02462 RAB9A-202ENST00000464506 2039 ntAPPRIS P1 TSL 1 (best) BASIC19.12■□□□□ 0.65
COL4A1P02462 C2orf54-202ENST00000388934 1911 ntAPPRIS P4 TSL 2 BASIC19.12■□□□□ 0.65
COL4A1P02462 PIKFYVE-202ENST00000308862 1640 ntTSL 1 (best) BASIC19.12■□□□□ 0.65
COL4A1P02462 PIP4K2C-207ENST00000550465 1532 ntTSL 2 BASIC19.12■□□□□ 0.65
COL4A1P02462 AL731569.1-201ENST00000428940 3058 ntTSL 2 BASIC19.12■□□□□ 0.65
COL4A1P02462 SYTL2-215ENST00000527523 3049 ntTSL 2 BASIC19.12■□□□□ 0.65
COL4A1P02462 BFSP2-201ENST00000302334 1558 ntAPPRIS P1 TSL 1 (best) BASIC19.11■□□□□ 0.65
COL4A1P02462 BMP1-201ENST00000306349 2626 ntTSL 1 (best) BASIC19.11■□□□□ 0.65
COL4A1P02462 NSUN5P1-204ENST00000428392 1562 ntTSL 2 BASIC19.11■□□□□ 0.65
COL4A1P02462 CD300A-205ENST00000577511 1459 ntTSL 1 (best) BASIC19.11■□□□□ 0.65
COL4A1P02462 GATAD1-201ENST00000287957 3361 ntAPPRIS P1 TSL 1 (best) BASIC19.11■□□□□ 0.65
COL4A1P02462 AC104809.1-201ENST00000425110 2345 ntTSL 2 BASIC19.11■□□□□ 0.65
COL4A1P02462 VAC14-201ENST00000261776 3099 ntAPPRIS P1 TSL 1 (best) BASIC19.11■□□□□ 0.65
COL4A1P02462 H2AFV-206ENST00000437072 589 ntTSL 4 BASIC19.11■□□□□ 0.65
COL4A1P02462 AL133481.1-201ENST00000438554 511 ntTSL 5 BASIC19.11■□□□□ 0.65
COL4A1P02462 ROPN1B-210ENST00000514116 1088 ntAPPRIS P1 TSL 1 (best) BASIC19.11■□□□□ 0.65
COL4A1P02462 IGHV3OR16-8-201ENST00000565407 349 ntAPPRIS P1 BASIC19.11■□□□□ 0.65
COL4A1P02462 AC136759.1-201ENST00000534201 2163 ntTSL 2 BASIC19.11■□□□□ 0.65
COL4A1P02462 LOH12CR2-201ENST00000381800 1540 ntTSL 1 (best) BASIC19.11■□□□□ 0.65
COL4A1P02462 STX3-201ENST00000337979 3299 ntAPPRIS P1 TSL 1 (best) BASIC19.11■□□□□ 0.65
COL4A1P02462 SEPT11-206ENST00000505788 2079 ntAPPRIS ALT1 TSL 5 BASIC19.11■□□□□ 0.65
COL4A1P02462 ZNF133-205ENST00000401790 2642 ntAPPRIS ALT2 TSL 2 BASIC19.11■□□□□ 0.65
COL4A1P02462 ZNF133-206ENST00000402618 2622 ntTSL 2 BASIC19.11■□□□□ 0.65
COL4A1P02462 ANXA8L1-208ENST00000622769 1861 ntTSL 1 (best) BASIC19.11■□□□□ 0.65
COL4A1P02462 NFATC1-208ENST00000586434 2103 ntAPPRIS ALT2 TSL 1 (best) BASIC19.11■□□□□ 0.65
COL4A1P02462 C1orf43-202ENST00000362076 1551 ntTSL 1 (best) BASIC19.11■□□□□ 0.65
COL4A1P02462 SCPEP1-201ENST00000262288 1942 ntAPPRIS P1 TSL 1 (best) BASIC19.11■□□□□ 0.65
COL4A1P02462 SPRYD7-202ENST00000378195 3086 ntTSL 2 BASIC19.11■□□□□ 0.65
COL4A1P02462 CRCP-201ENST00000338592 1393 ntTSL 1 (best) BASIC19.11■□□□□ 0.65
COL4A1P02462 ST7L-207ENST00000369669 1743 ntTSL 2 BASIC19.11■□□□□ 0.65
COL4A1P02462 C8orf74-201ENST00000304519 1036 ntAPPRIS P2 TSL 1 (best) BASIC19.11■□□□□ 0.65
COL4A1P02462 SH3BGR-201ENST00000333634 1251 ntAPPRIS P2 TSL 1 (best) BASIC19.11■□□□□ 0.65
COL4A1P02462 ACKR1-201ENST00000368121 1240 ntBASIC19.11■□□□□ 0.65
COL4A1P02462 PGAP2-209ENST00000464261 830 ntTSL 3 BASIC19.11■□□□□ 0.65
COL4A1P02462 TPI1-206ENST00000488464 791 ntTSL 5 BASIC19.11■□□□□ 0.65
COL4A1P02462 AC084859.1-201ENST00000533002 670 ntTSL 4 BASIC19.11■□□□□ 0.65
COL4A1P02462 TMEM258-204ENST00000537328 575 ntAPPRIS P1 TSL 1 (best) BASIC19.11■□□□□ 0.65
COL4A1P02462 DIO3OS-203ENST00000554441 1068 ntTSL 1 (best) BASIC19.11■□□□□ 0.65
COL4A1P02462 RNF187-201ENST00000305943 3017 ntAPPRIS ALT2 TSL 1 (best) BASIC19.11■□□□□ 0.65
COL4A1P02462 TIPRL-202ENST00000367833 3032 ntAPPRIS P1 TSL 1 (best) BASIC19.11■□□□□ 0.65
COL4A1P02462 MIB2-201ENST00000355826 3290 ntAPPRIS ALT2 TSL 1 (best) BASIC19.11■□□□□ 0.65
COL4A1P02462 USP2-202ENST00000455332 2903 ntTSL 1 (best) BASIC19.11■□□□□ 0.65
COL4A1P02462 FBXO8-202ENST00000503293 1546 ntTSL 1 (best) BASIC19.11■□□□□ 0.65
COL4A1P02462 ZNF74-202ENST00000400451 3159 ntAPPRIS P2 TSL 1 (best) BASIC19.1■□□□□ 0.65
COL4A1P02462 CLCN2-205ENST00000457512 2820 ntAPPRIS ALT2 TSL 2 BASIC19.1■□□□□ 0.65
COL4A1P02462 PLEKHM2-202ENST00000375799 4122 ntAPPRIS P2 TSL 1 (best) BASIC19.1■□□□□ 0.65
COL4A1P02462 PCDHB6-202ENST00000622991 2608 ntTSL 2 BASIC19.1■□□□□ 0.65
COL4A1P02462 TMEM189-UBE2V1-201ENST00000341698 2757 ntAPPRIS P1 TSL 1 (best) BASIC19.1■□□□□ 0.65
COL4A1P02462 GRB7-205ENST00000445327 2197 ntTSL 2 BASIC19.1■□□□□ 0.65
COL4A1P02462 RSPO1-203ENST00000612451 2463 ntTSL 1 (best) BASIC19.1■□□□□ 0.65
COL4A1P02462 HNF1A-216ENST00000617366 2473 ntTSL 1 (best) BASIC19.1■□□□□ 0.65
COL4A1P02462 LITAF-201ENST00000339430 2356 ntAPPRIS P1 TSL 1 (best) BASIC19.1■□□□□ 0.65
COL4A1P02462 DOK3-203ENST00000377112 1884 ntTSL 2 BASIC19.1■□□□□ 0.65
COL4A1P02462 ZNF7-218ENST00000544249 2125 ntTSL 2 BASIC19.1■□□□□ 0.65
COL4A1P02462 AC109460.3-201ENST00000569969 5296 ntTSL 2 BASIC19.1■□□□□ 0.65
COL4A1P02462 NEU2-201ENST00000233840 1143 ntAPPRIS P1 TSL 1 (best) BASIC19.1■□□□□ 0.65
COL4A1P02462 TEX29-201ENST00000283547 709 ntAPPRIS P1 TSL 1 (best) BASIC19.1■□□□□ 0.65
COL4A1P02462 EMC3-AS1-202ENST00000366264 559 ntTSL 4 BASIC19.1■□□□□ 0.65
COL4A1P02462 SELENOM-202ENST00000402395 1054 ntAPPRIS P2 TSL 1 (best) BASIC19.1■□□□□ 0.65
COL4A1P02462 AC233976.1-201ENST00000425150 451 ntTSL 3 BASIC19.1■□□□□ 0.65
COL4A1P02462 AC006003.1-201ENST00000448541 613 ntTSL 4 BASIC19.1■□□□□ 0.65
COL4A1P02462 FHIT-208ENST00000492590 1081 ntAPPRIS P1 TSL 1 (best) BASIC19.1■□□□□ 0.65
COL4A1P02462 RPSAP36-202ENST00000494591 1261 ntBASIC19.1■□□□□ 0.65
COL4A1P02462 AP001007.1-201ENST00000526796 645 ntTSL 2 BASIC19.1■□□□□ 0.65
COL4A1P02462 ANAPC15-214ENST00000543587 883 ntAPPRIS ALT1 TSL 1 (best) BASIC19.1■□□□□ 0.65
COL4A1P02462 AC079316.1-201ENST00000548397 411 ntBASIC19.1■□□□□ 0.65
COL4A1P02462 AC090502.1-201ENST00000549905 748 ntTSL 1 (best) BASIC19.1■□□□□ 0.65
Retrieved 100 of 98,524 protein–RNA pairs in 37.5 ms