Protein–RNA interactions for Protein: P02458

COL2A1, Collagen alpha-1(II) chain, humanhuman

Predicted RBP Predictions only

Length 1,487 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
COL2A1P02458 KRT35-201ENST00000246639 1778 ntTSL 1 (best) BASIC18.33■□□□□ 0.52
COL2A1P02458 CSAD-208ENST00000444623 2122 ntAPPRIS P1 TSL 1 (best) BASIC18.33■□□□□ 0.52
COL2A1P02458 NDUFV1-202ENST00000415352 1512 ntAPPRIS ALT1 TSL 2 BASIC18.33■□□□□ 0.52
COL2A1P02458 UBE3B-212ENST00000540230 1541 ntTSL 1 (best) BASIC18.33■□□□□ 0.52
COL2A1P02458 SLC22A1-202ENST00000366963 1948 ntAPPRIS P1 TSL 1 (best) BASIC18.33■□□□□ 0.52
COL2A1P02458 HCLS1-202ENST00000428394 1560 ntTSL 2 BASIC18.33■□□□□ 0.52
COL2A1P02458 MINDY1-202ENST00000361738 1961 ntTSL 2 BASIC18.33■□□□□ 0.52
COL2A1P02458 LOX-206ENST00000639739 1626 ntTSL 5 BASIC18.33■□□□□ 0.52
COL2A1P02458 LHB-201ENST00000221421 514 ntAPPRIS P1 TSL 1 (best) BASIC18.33■□□□□ 0.52
COL2A1P02458 RAB41-201ENST00000276066 1071 ntAPPRIS P2 TSL 1 (best) BASIC18.33■□□□□ 0.52
COL2A1P02458 RAB41-202ENST00000374473 1074 ntAPPRIS ALT2 TSL 5 BASIC18.33■□□□□ 0.52
COL2A1P02458 DHDDS-206ENST00000427245 868 ntTSL 5 BASIC18.33■□□□□ 0.52
COL2A1P02458 AL139158.2-202ENST00000428151 573 ntTSL 3 BASIC18.33■□□□□ 0.52
COL2A1P02458 CR589904.1-201ENST00000437830 732 ntTSL 5 BASIC18.33■□□□□ 0.52
COL2A1P02458 AL133481.1-201ENST00000438554 511 ntTSL 5 BASIC18.33■□□□□ 0.52
COL2A1P02458 AC126768.2-201ENST00000511693 718 ntTSL 3 BASIC18.33■□□□□ 0.52
COL2A1P02458 LSM1-203ENST00000520755 975 ntTSL 1 (best) BASIC18.33■□□□□ 0.52
COL2A1P02458 FAM8A2P-201ENST00000528813 1142 ntBASIC18.33■□□□□ 0.52
COL2A1P02458 RAB40B-202ENST00000538809 704 ntTSL 2 BASIC18.33■□□□□ 0.52
COL2A1P02458 AC010503.1-201ENST00000596027 520 ntTSL 5 BASIC18.33■□□□□ 0.52
COL2A1P02458 AC010328.2-201ENST00000597698 1111 ntBASIC18.33■□□□□ 0.52
COL2A1P02458 COPS9-205ENST00000607357 418 ntAPPRIS P1 TSL 1 (best) BASIC18.33■□□□□ 0.52
COL2A1P02458 AC145423.3-201ENST00000615987 467 ntBASIC18.33■□□□□ 0.52
COL2A1P02458 CYP4F2-202ENST00000221700 2407 ntAPPRIS P2 TSL 1 (best) BASIC18.32■□□□□ 0.52
COL2A1P02458 IKBKE-204ENST00000584998 2487 ntTSL 1 (best) BASIC18.32■□□□□ 0.52
COL2A1P02458 DENND2A-201ENST00000275884 3735 ntAPPRIS P1 TSL 1 (best) BASIC18.32■□□□□ 0.52
COL2A1P02458 AC020916.1-201ENST00000587762 1774 ntBASIC18.32■□□□□ 0.52
COL2A1P02458 GRB7-205ENST00000445327 2197 ntTSL 2 BASIC18.32■□□□□ 0.52
COL2A1P02458 HCG18-233ENST00000412685 2552 ntTSL 2 BASIC18.32■□□□□ 0.52
COL2A1P02458 PAX1-205ENST00000613128 5352 ntAPPRIS ALT2 TSL 1 (best) BASIC18.32■□□□□ 0.52
COL2A1P02458 DARS-AS1-209ENST00000594219 1420 ntTSL 5 BASIC18.32■□□□□ 0.52
COL2A1P02458 SIGLEC12-203ENST00000598614 1434 ntTSL 5 BASIC18.32■□□□□ 0.52
COL2A1P02458 PNO1-201ENST00000263657 2286 ntAPPRIS P1 TSL 1 (best) BASIC18.32■□□□□ 0.52
COL2A1P02458 LINC00593-202ENST00000560853 1483 ntTSL 1 (best) BASIC18.32■□□□□ 0.52
COL2A1P02458 MARK1-203ENST00000402574 5273 ntTSL 1 (best) BASIC18.32■□□□□ 0.52
COL2A1P02458 SLC52A1-201ENST00000254853 2377 ntAPPRIS P1 TSL 1 (best) BASIC18.32■□□□□ 0.52
COL2A1P02458 PRR19-201ENST00000341747 1530 ntAPPRIS P2 TSL 5 BASIC18.32■□□□□ 0.52
COL2A1P02458 SMYD3-214ENST00000490107 1548 ntAPPRIS P1 TSL 1 (best) BASIC18.32■□□□□ 0.52
COL2A1P02458 FAM49B-201ENST00000401979 2024 ntAPPRIS P1 TSL 2 BASIC18.32■□□□□ 0.52
COL2A1P02458 MAPKAPK2-202ENST00000367103 2961 ntAPPRIS P1 TSL 1 (best) BASIC18.32■□□□□ 0.52
COL2A1P02458 NDRG2-209ENST00000397853 2079 ntAPPRIS P4 TSL 2 BASIC18.32■□□□□ 0.52
COL2A1P02458 LINC00487-201ENST00000382045 2131 ntTSL 2 BASIC18.32■□□□□ 0.52
COL2A1P02458 NMD3-202ENST00000460469 3061 ntAPPRIS P1 TSL 1 (best) BASIC18.32■□□□□ 0.52
COL2A1P02458 GRB10-201ENST00000335866 5032 ntTSL 1 (best) BASIC18.32■□□□□ 0.52
COL2A1P02458 AC022188.1-201ENST00000620960 1664 ntBASIC18.32■□□□□ 0.52
COL2A1P02458 KCNMA1-293ENST00000640969 5789 ntAPPRIS ALT2 TSL 5 BASIC18.32■□□□□ 0.52
COL2A1P02458 FES-207ENST00000444422 2266 ntTSL 1 (best) BASIC18.32■□□□□ 0.52
COL2A1P02458 CBY1-201ENST00000216029 1133 ntAPPRIS P1 TSL 1 (best) BASIC18.32■□□□□ 0.52
COL2A1P02458 CYB5R3-203ENST00000402438 1050 ntTSL 5 BASIC18.32■□□□□ 0.52
COL2A1P02458 KLF2P2-201ENST00000416807 1039 ntBASIC18.32■□□□□ 0.52
COL2A1P02458 AC092614.1-201ENST00000419640 909 ntTSL 3 BASIC18.32■□□□□ 0.52
COL2A1P02458 FAM197Y7-201ENST00000432892 766 ntBASIC18.32■□□□□ 0.52
COL2A1P02458 KRBOX4-206ENST00000478600 730 ntAPPRIS ALT2 TSL 2 BASIC18.32■□□□□ 0.52
COL2A1P02458 AC108725.1-201ENST00000495472 409 ntBASIC18.32■□□□□ 0.52
COL2A1P02458 AC080188.2-201ENST00000508985 552 ntTSL 4 BASIC18.32■□□□□ 0.52
COL2A1P02458 C11orf98-201ENST00000524958 654 ntAPPRIS P1 TSL 2 BASIC18.32■□□□□ 0.52
COL2A1P02458 AC078819.1-201ENST00000547454 765 ntBASIC18.32■□□□□ 0.52
COL2A1P02458 AC012085.1-201ENST00000548270 765 ntBASIC18.32■□□□□ 0.52
COL2A1P02458 CD63-208ENST00000549117 1233 ntAPPRIS P1 TSL 3 BASIC18.32■□□□□ 0.52
COL2A1P02458 AC091891.1-201ENST00000560688 688 ntTSL 3 BASIC18.32■□□□□ 0.52
COL2A1P02458 HIRIP3-204ENST00000564026 988 ntTSL 2 BASIC18.32■□□□□ 0.52
COL2A1P02458 AP000439.4-201ENST00000567742 664 ntTSL 3 BASIC18.32■□□□□ 0.52
COL2A1P02458 AC008805.2-201ENST00000590069 435 ntTSL 5 BASIC18.32■□□□□ 0.52
COL2A1P02458 CCL5-202ENST00000605140 1244 ntAPPRIS P1 TSL 5 BASIC18.32■□□□□ 0.52
COL2A1P02458 SPATA21-206ENST00000612240 603 ntTSL 5 BASIC18.32■□□□□ 0.52
COL2A1P02458 AC114737.3-201ENST00000636708 570 ntTSL 4 BASIC18.32■□□□□ 0.52
COL2A1P02458 SLC39A1-203ENST00000368621 2398 ntAPPRIS P1 TSL 2 BASIC18.32■□□□□ 0.52
COL2A1P02458 ZSCAN10-201ENST00000252463 2463 ntTSL 1 (best) BASIC18.32■□□□□ 0.52
COL2A1P02458 CYP2T1P-202ENST00000641596 2535 ntBASIC18.31■□□□□ 0.52
COL2A1P02458 SEPT5-204ENST00000406395 1974 ntTSL 5 BASIC18.31■□□□□ 0.52
COL2A1P02458 RAB9A-202ENST00000464506 2039 ntAPPRIS P1 TSL 1 (best) BASIC18.31■□□□□ 0.52
COL2A1P02458 MAX-205ENST00000358664 1546 ntAPPRIS P1 TSL 1 (best) BASIC18.31■□□□□ 0.52
COL2A1P02458 CAAP1-206ENST00000625311 1532 ntTSL 2 BASIC18.31■□□□□ 0.52
COL2A1P02458 PIKFYVE-202ENST00000308862 1640 ntTSL 1 (best) BASIC18.31■□□□□ 0.52
COL2A1P02458 RSPO1-204ENST00000615459 2331 ntTSL 2 BASIC18.31■□□□□ 0.52
COL2A1P02458 JKAMP-215ENST00000616435 2338 ntTSL 5 BASIC18.31■□□□□ 0.52
COL2A1P02458 AL139099.2-201ENST00000555043 2469 ntTSL 2 BASIC18.31■□□□□ 0.52
COL2A1P02458 HOXB1-201ENST00000239174 2020 ntAPPRIS P1 TSL 1 (best) BASIC18.31■□□□□ 0.52
COL2A1P02458 TAF15-205ENST00000603777 2011 ntAPPRIS ALT2 TSL 5 BASIC18.31■□□□□ 0.52
COL2A1P02458 ZNRD1-201ENST00000332435 864 ntAPPRIS P1 TSL 1 (best) BASIC18.31■□□□□ 0.52
COL2A1P02458 NUS1P3-201ENST00000423502 862 ntBASIC18.31■□□□□ 0.52
COL2A1P02458 USB1-203ENST00000539737 1212 ntTSL 2 BASIC18.31■□□□□ 0.52
COL2A1P02458 MIR22HG-212ENST00000577164 931 ntTSL 4 BASIC18.31■□□□□ 0.52
COL2A1P02458 AC011510.1-201ENST00000598541 286 ntTSL 3 BASIC18.31■□□□□ 0.52
COL2A1P02458 FAM218A-201ENST00000513876 2175 ntAPPRIS P1 BASIC18.31■□□□□ 0.52
COL2A1P02458 AC136759.1-201ENST00000534201 2163 ntTSL 2 BASIC18.31■□□□□ 0.52
COL2A1P02458 UBE2Q2-201ENST00000267938 3130 ntAPPRIS P1 TSL 1 (best) BASIC18.31■□□□□ 0.52
COL2A1P02458 EWSR1-201ENST00000331029 2267 ntTSL 5 BASIC18.31■□□□□ 0.52
COL2A1P02458 SPIB-201ENST00000270632 1443 ntTSL 1 (best) BASIC18.31■□□□□ 0.52
COL2A1P02458 FOS-202ENST00000535987 1402 ntTSL 2 BASIC18.31■□□□□ 0.52
COL2A1P02458 SLC27A5-201ENST00000263093 2361 ntAPPRIS P3 TSL 1 (best) BASIC18.31■□□□□ 0.52
COL2A1P02458 RGS11-202ENST00000316163 2376 ntTSL 1 (best) BASIC18.31■□□□□ 0.52
COL2A1P02458 INTS14-209ENST00000567744 2419 ntTSL 2 BASIC18.31■□□□□ 0.52
COL2A1P02458 HPSE-206ENST00000512196 1571 ntTSL 1 (best) BASIC18.31■□□□□ 0.52
COL2A1P02458 NME7-201ENST00000367811 1642 ntAPPRIS P3 TSL 1 (best) BASIC18.31■□□□□ 0.52
COL2A1P02458 TKT-202ENST00000423516 2075 ntTSL 2 BASIC18.3■□□□□ 0.52
COL2A1P02458 ARFRP1-213ENST00000619493 2456 ntAPPRIS P1 TSL 3 BASIC18.3■□□□□ 0.52
COL2A1P02458 RASA4-202ENST00000449970 2787 ntAPPRIS ALT1 TSL 2 BASIC18.3■□□□□ 0.52
COL2A1P02458 DIP2A-204ENST00000457905 3044 ntTSL 1 (best) BASIC18.3■□□□□ 0.52
COL2A1P02458 LCN9-201ENST00000277526 531 ntAPPRIS P2 TSL 5 BASIC18.3■□□□□ 0.52
Retrieved 100 of 98,524 protein–RNA pairs in 35.3 ms