Protein–RNA interactions for Protein: O43556

SGCE, Epsilon-sarcoglycan, humanhuman

Predictions only

Length 437 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
SGCEO43556 SLC29A1-203ENST00000371724 2275 ntAPPRIS P1 TSL 5 BASIC14.22□□□□□ -0.13
SGCEO43556 ZDHHC13-201ENST00000399351 2283 ntTSL 1 (best) BASIC14.22□□□□□ -0.13
SGCEO43556 FAM83G-201ENST00000345041 2929 ntAPPRIS P1 TSL 5 BASIC14.22□□□□□ -0.13
SGCEO43556 RAB9A-202ENST00000464506 2039 ntAPPRIS P1 TSL 1 (best) BASIC14.22□□□□□ -0.13
SGCEO43556 AC073324.2-201ENST00000626532 2941 ntTSL 4 BASIC14.22□□□□□ -0.13
SGCEO43556 CLEC18A-209ENST00000615430 2215 ntAPPRIS P2 TSL 5 BASIC14.22□□□□□ -0.13
SGCEO43556 CLEC18C-211ENST00000618957 2215 ntAPPRIS P2 TSL 5 BASIC14.22□□□□□ -0.13
SGCEO43556 CLEC18B-205ENST00000619275 2215 ntAPPRIS ALT2 TSL 5 BASIC14.22□□□□□ -0.13
SGCEO43556 PITPNM1-202ENST00000436757 4216 ntAPPRIS ALT1 TSL 1 (best) BASIC14.22□□□□□ -0.13
SGCEO43556 EPHA2-201ENST00000358432 3964 ntAPPRIS P1 TSL 1 (best) BASIC14.22□□□□□ -0.13
SGCEO43556 IRF2BP2-202ENST00000366610 4615 ntAPPRIS ALT2 TSL 1 (best) BASIC14.22□□□□□ -0.13
SGCEO43556 ASS1-204ENST00000372394 1973 ntAPPRIS P1 TSL 2 BASIC14.22□□□□□ -0.13
SGCEO43556 APBB1-202ENST00000311051 2619 ntAPPRIS P3 TSL 1 (best) BASIC14.22□□□□□ -0.13
SGCEO43556 TMEM222-210ENST00000608611 1511 ntAPPRIS ALT1 TSL 1 (best) BASIC14.22□□□□□ -0.13
SGCEO43556 RUNX1T1-251ENST00000615601 7372 ntAPPRIS ALT1 TSL 5 BASIC14.22□□□□□ -0.13
SGCEO43556 GPR89B-201ENST00000314163 1934 ntAPPRIS P1 TSL 1 (best) BASIC14.22□□□□□ -0.13
SGCEO43556 CICP13-201ENST00000422015 2789 ntBASIC14.22□□□□□ -0.13
SGCEO43556 RPS27A-201ENST00000272317 1071 ntAPPRIS P1 TSL 1 (best) BASIC14.22□□□□□ -0.13
SGCEO43556 PPP1R27-201ENST00000330261 782 ntAPPRIS P1 TSL 1 (best) BASIC14.22□□□□□ -0.13
SGCEO43556 GPX7-201ENST00000361314 1228 ntAPPRIS P1 TSL 1 (best) BASIC14.22□□□□□ -0.13
SGCEO43556 CRIP1-203ENST00000409393 677 ntAPPRIS P1 TSL 3 BASIC14.22□□□□□ -0.13
SGCEO43556 TIMM8BP1-201ENST00000452384 211 ntBASIC14.22□□□□□ -0.13
SGCEO43556 LINC01640-201ENST00000452505 550 ntTSL 4 BASIC14.22□□□□□ -0.13
SGCEO43556 AC018730.1-201ENST00000454183 327 ntTSL 3 BASIC14.22□□□□□ -0.13
SGCEO43556 ALG1L5P-201ENST00000482043 771 ntBASIC14.22□□□□□ -0.13
SGCEO43556 IGHV3-62-201ENST00000520057 340 ntBASIC14.22□□□□□ -0.13
SGCEO43556 AC116021.1-201ENST00000530049 653 ntTSL 3 BASIC14.22□□□□□ -0.13
SGCEO43556 AL138781.1-202ENST00000563018 775 ntTSL 3 BASIC14.22□□□□□ -0.13
SGCEO43556 Z97055.2-201ENST00000563715 859 ntTSL 3 BASIC14.22□□□□□ -0.13
SGCEO43556 INO80E-210ENST00000567705 880 ntTSL 3 BASIC14.22□□□□□ -0.13
SGCEO43556 AC005829.1-201ENST00000570002 483 ntBASIC14.22□□□□□ -0.13
SGCEO43556 TNFRSF13B-203ENST00000579315 600 ntAPPRIS ALT2 TSL 3 BASIC14.22□□□□□ -0.13
SGCEO43556 SPTSSB-204ENST00000617024 1292 ntBASIC14.22□□□□□ -0.13
SGCEO43556 CKMT1B-215ENST00000627381 1074 ntTSL 5 BASIC14.22□□□□□ -0.13
SGCEO43556 LINC01635-202ENST00000635097 1023 ntTSL 5 BASIC14.22□□□□□ -0.13
SGCEO43556 RASAL2-AS1-202ENST00000421505 2329 ntTSL 1 (best) BASIC14.22□□□□□ -0.13
SGCEO43556 NTNG1-202ENST00000370065 1485 ntTSL 5 BASIC14.22□□□□□ -0.13
SGCEO43556 RET-202ENST00000355710 5659 ntAPPRIS P3 TSL 5 BASIC14.22□□□□□ -0.13
SGCEO43556 MLLT6-210ENST00000620609 2714 ntAPPRIS ALT2 TSL 1 (best) BASIC14.22□□□□□ -0.13
SGCEO43556 AL035685.1-202ENST00000637341 1688 ntTSL 5 BASIC14.22□□□□□ -0.13
SGCEO43556 GRAMD1C-201ENST00000358160 4177 ntAPPRIS P1 TSL 1 (best) BASIC14.22□□□□□ -0.13
SGCEO43556 C2orf48-201ENST00000381786 1897 ntTSL 2 BASIC14.22□□□□□ -0.13
SGCEO43556 ZNF131-214ENST00000509634 3340 ntAPPRIS P1 TSL 5 BASIC14.22□□□□□ -0.13
SGCEO43556 RHOBTB2-206ENST00000522948 4959 ntAPPRIS ALT2 TSL 5 BASIC14.22□□□□□ -0.13
SGCEO43556 FOXP3-202ENST00000376199 2274 ntTSL 2 BASIC14.22□□□□□ -0.13
SGCEO43556 NUP58-201ENST00000381718 2489 ntAPPRIS ALT1 TSL 2 BASIC14.22□□□□□ -0.13
SGCEO43556 PRR19-204ENST00000598490 1641 ntAPPRIS ALT2 TSL 1 (best) BASIC14.22□□□□□ -0.13
SGCEO43556 FAM227B-201ENST00000299338 2008 ntAPPRIS P3 TSL 2 BASIC14.22□□□□□ -0.13
SGCEO43556 MYO3A-206ENST00000543632 2203 ntTSL 1 (best) BASIC14.22□□□□□ -0.13
SGCEO43556 ERG28-201ENST00000256319 2633 ntAPPRIS P1 TSL 1 (best) BASIC14.22□□□□□ -0.13
SGCEO43556 CACFD1-207ENST00000542192 2754 ntTSL 2 BASIC14.22□□□□□ -0.13
SGCEO43556 AC010491.1-201ENST00000563101 2797 ntBASIC14.22□□□□□ -0.13
SGCEO43556 PITPNM2-AS1-201ENST00000506255 2191 ntTSL 2 BASIC14.22□□□□□ -0.13
SGCEO43556 AC067930.6-201ENST00000623257 4947 ntBASIC14.22□□□□□ -0.13
SGCEO43556 LINC02381-201ENST00000508564 1369 ntTSL 1 (best) BASIC14.22□□□□□ -0.13
SGCEO43556 WDR74-206ENST00000529106 1366 ntAPPRIS P1 TSL 2 BASIC14.22□□□□□ -0.13
SGCEO43556 LINC01250-201ENST00000457478 2344 ntTSL 2 BASIC14.21□□□□□ -0.13
SGCEO43556 GFM1-208ENST00000478576 2147 ntTSL 2 BASIC14.21□□□□□ -0.13
SGCEO43556 LINC02447-202ENST00000501888 2146 ntBASIC14.21□□□□□ -0.13
SGCEO43556 TMED7-TICAM2-201ENST00000282382 3491 ntAPPRIS P1 TSL 2 BASIC14.21□□□□□ -0.13
SGCEO43556 CDC14C-201ENST00000428251 1719 ntBASIC14.21□□□□□ -0.13
SGCEO43556 PHKG2-201ENST00000328273 1536 ntAPPRIS ALT1 TSL 5 BASIC14.21□□□□□ -0.13
SGCEO43556 PSMD5-203ENST00000373904 1538 ntTSL 2 BASIC14.21□□□□□ -0.13
SGCEO43556 NFYC-210ENST00000425457 1536 ntTSL 2 BASIC14.21□□□□□ -0.13
SGCEO43556 NDOR1-202ENST00000371521 2497 ntTSL 1 (best) BASIC14.21□□□□□ -0.13
SGCEO43556 BEX4-202ENST00000372695 1328 ntAPPRIS P1 TSL 1 (best) BASIC14.21□□□□□ -0.13
SGCEO43556 RHD-207ENST00000454452 1303 ntTSL 1 (best) BASIC14.21□□□□□ -0.13
SGCEO43556 UBE2I-201ENST00000325437 2832 ntAPPRIS P1 TSL 3 BASIC14.21□□□□□ -0.13
SGCEO43556 PTPRO-202ENST00000348962 5061 ntTSL 1 (best) BASIC14.21□□□□□ -0.13
SGCEO43556 NRG2-209ENST00000541337 3723 ntTSL 5 BASIC14.21□□□□□ -0.13
SGCEO43556 NTRK3-203ENST00000357724 2980 ntTSL 5 BASIC14.21□□□□□ -0.13
SGCEO43556 DCP1B-202ENST00000535873 2231 ntTSL 2 BASIC14.21□□□□□ -0.13
SGCEO43556 BORCS8-203ENST00000477565 1489 ntAPPRIS ALT1 TSL 1 (best) BASIC14.21□□□□□ -0.13
SGCEO43556 ZFAND6-207ENST00000558494 1472 ntAPPRIS P1 TSL 1 (best) BASIC14.21□□□□□ -0.13
SGCEO43556 MYCBPAP-203ENST00000436259 3102 ntAPPRIS ALT2 TSL 5 BASIC14.21□□□□□ -0.13
SGCEO43556 CRK-202ENST00000398970 3675 ntTSL 1 (best) BASIC14.21□□□□□ -0.13
SGCEO43556 UHRF2-201ENST00000276893 3452 ntAPPRIS P1 TSL 1 (best) BASIC14.21□□□□□ -0.13
SGCEO43556 LITAF-201ENST00000339430 2356 ntAPPRIS P1 TSL 1 (best) BASIC14.21□□□□□ -0.13
SGCEO43556 NKG7-201ENST00000221978 843 ntAPPRIS P1 TSL 1 (best) BASIC14.21□□□□□ -0.13
SGCEO43556 CD82-202ENST00000342935 967 ntTSL 5 BASIC14.21□□□□□ -0.13
SGCEO43556 ITGA9-AS1-201ENST00000366441 895 ntTSL 3 BASIC14.21□□□□□ -0.13
SGCEO43556 AMACR-202ENST00000382068 862 ntTSL 1 (best) BASIC14.21□□□□□ -0.13
SGCEO43556 CBR1-202ENST00000399191 838 ntTSL 3 BASIC14.21□□□□□ -0.13
SGCEO43556 HAUS4P1-201ENST00000406739 1145 ntBASIC14.21□□□□□ -0.13
SGCEO43556 ZNF655-216ENST00000449244 544 ntTSL 4 BASIC14.21□□□□□ -0.13
SGCEO43556 AP001471.1-201ENST00000454245 672 ntTSL 3 BASIC14.21□□□□□ -0.13
SGCEO43556 SLC50A1-209ENST00000484157 886 ntTSL 3 BASIC14.21□□□□□ -0.13
SGCEO43556 KRT8P48-201ENST00000515599 1220 ntBASIC14.21□□□□□ -0.13
SGCEO43556 AP001107.2-202ENST00000528650 480 ntTSL 3 BASIC14.21□□□□□ -0.13
SGCEO43556 RNF34-208ENST00000555076 593 ntTSL 3 BASIC14.21□□□□□ -0.13
SGCEO43556 AC243562.1-201ENST00000560672 389 ntBASIC14.21□□□□□ -0.13
SGCEO43556 AC009053.3-201ENST00000567148 574 ntTSL 4 BASIC14.21□□□□□ -0.13
SGCEO43556 MIR4321-201ENST00000592276 80 ntBASIC14.21□□□□□ -0.13
SGCEO43556 NKG7-205ENST00000600427 520 ntTSL 3 BASIC14.21□□□□□ -0.13
SGCEO43556 TBX18-206ENST00000606784 1230 ntTSL 1 (best) BASIC14.21□□□□□ -0.13
SGCEO43556 AC004832.1-201ENST00000610936 1005 ntTSL 5 BASIC14.21□□□□□ -0.13
SGCEO43556 OTX1-201ENST00000282549 2861 ntAPPRIS P1 TSL 1 (best) BASIC14.21□□□□□ -0.13
SGCEO43556 OTX1-202ENST00000366671 2861 ntAPPRIS P1 TSL 3 BASIC14.21□□□□□ -0.13
SGCEO43556 TMEM40-202ENST00000314124 2308 ntAPPRIS P3 TSL 2 BASIC14.21□□□□□ -0.13
SGCEO43556 NSMF-205ENST00000371474 3571 ntAPPRIS ALT1 TSL 1 (best) BASIC14.21□□□□□ -0.13
Retrieved 100 of 98,524 protein–RNA pairs in 44.6 ms