Protein–RNA interactions for Protein: O15259

NPHP1, Nephrocystin-1, humanhuman

Predictions only

Length 732 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
NPHP1O15259 TC2N-201ENST00000340892 4708 ntAPPRIS P1 TSL 1 (best) BASIC20.1■□□□□ 0.81
NPHP1O15259 CREB3L1-206ENST00000621158 2687 ntAPPRIS P1 TSL 1 (best) BASIC20.1■□□□□ 0.81
NPHP1O15259 TBC1D24-205ENST00000567020 6673 ntAPPRIS P3 TSL 1 (best) BASIC20.09■□□□□ 0.81
NPHP1O15259 TMEFF2-201ENST00000272771 2604 ntAPPRIS P1 TSL 1 (best) BASIC20.09■□□□□ 0.81
NPHP1O15259 PCCB-218ENST00000490504 1613 ntTSL 3 BASIC20.09■□□□□ 0.81
NPHP1O15259 UNC13A-204ENST00000550896 5200 ntAPPRIS ALT2 TSL 5 BASIC20.09■□□□□ 0.81
NPHP1O15259 CTSW-201ENST00000307886 1300 ntAPPRIS P1 TSL 1 (best) BASIC20.09■□□□□ 0.81
NPHP1O15259 OSBPL10-201ENST00000396556 6600 ntAPPRIS P3 TSL 1 (best) BASIC20.09■□□□□ 0.81
NPHP1O15259 RGS7-203ENST00000366564 2295 ntAPPRIS ALT2 TSL 1 (best) BASIC20.09■□□□□ 0.81
NPHP1O15259 FUS-201ENST00000254108 5119 ntAPPRIS P3 TSL 1 (best) BASIC20.09■□□□□ 0.81
NPHP1O15259 PLEKHG6-203ENST00000396988 2963 ntAPPRIS P1 TSL 2 BASIC20.09■□□□□ 0.81
NPHP1O15259 CHST3-201ENST00000373115 6970 ntAPPRIS P1 TSL 1 (best) BASIC20.09■□□□□ 0.81
NPHP1O15259 PDIA3P1-201ENST00000471856 1510 ntBASIC20.09■□□□□ 0.81
NPHP1O15259 AVPR1B-201ENST00000367126 2237 ntAPPRIS P1 TSL 1 (best) BASIC20.09■□□□□ 0.81
NPHP1O15259 NOL4-211ENST00000589544 2221 ntTSL 1 (best) BASIC20.09■□□□□ 0.81
NPHP1O15259 CASR-202ENST00000498619 5009 ntTSL 1 (best) BASIC20.09■□□□□ 0.81
NPHP1O15259 ETFB-201ENST00000309244 900 ntAPPRIS P1 TSL 1 (best) BASIC20.09■□□□□ 0.81
NPHP1O15259 AKIP1-202ENST00000309357 1232 ntAPPRIS ALT2 TSL 1 (best) BASIC20.09■□□□□ 0.81
NPHP1O15259 MRPL55-215ENST00000366742 630 ntAPPRIS P1 TSL 2 BASIC20.09■□□□□ 0.81
NPHP1O15259 FANK1-204ENST00000368695 1296 ntTSL 1 (best) BASIC20.09■□□□□ 0.81
NPHP1O15259 LRCOL1-201ENST00000376608 778 ntAPPRIS P1 TSL 1 (best) BASIC20.09■□□□□ 0.81
NPHP1O15259 LINC01759-201ENST00000412639 985 ntTSL 3 BASIC20.09■□□□□ 0.81
NPHP1O15259 KDM4A-AS1-204ENST00000439057 686 ntTSL 1 (best) BASIC20.09■□□□□ 0.81
NPHP1O15259 MAGI2-AS3-208ENST00000446159 670 ntTSL 3 BASIC20.09■□□□□ 0.81
NPHP1O15259 PRSS42-202ENST00000447340 1280 ntTSL 2 BASIC20.09■□□□□ 0.81
NPHP1O15259 AC011489.1-202ENST00000586556 618 ntTSL 2 BASIC20.09■□□□□ 0.81
NPHP1O15259 Metazoa_SRP.80-201ENST00000619894 320 ntBASIC20.09■□□□□ 0.81
NPHP1O15259 LINC01759-203ENST00000635271 888 ntTSL 5 BASIC20.09■□□□□ 0.81
NPHP1O15259 TOM1L1-204ENST00000570371 2442 ntTSL 5 BASIC20.09■□□□□ 0.81
NPHP1O15259 AC020915.1-201ENST00000413518 1469 ntAPPRIS ALT2 TSL 2 BASIC20.09■□□□□ 0.81
NPHP1O15259 NDUFV1-223ENST00000532303 1493 ntTSL 2 BASIC20.09■□□□□ 0.81
NPHP1O15259 SSR4-201ENST00000320857 1671 ntAPPRIS P1 TSL 2 BASIC20.09■□□□□ 0.81
NPHP1O15259 HASPIN-201ENST00000325418 2797 ntAPPRIS P1 BASIC20.09■□□□□ 0.81
NPHP1O15259 RBCK1-202ENST00000356286 2774 ntAPPRIS P1 TSL 1 (best) BASIC20.09■□□□□ 0.81
NPHP1O15259 TAF1C-222ENST00000570117 2349 ntAPPRIS ALT2 TSL 2 BASIC20.09■□□□□ 0.81
NPHP1O15259 PRDM8-201ENST00000339711 4095 ntAPPRIS P1 TSL 1 (best) BASIC20.09■□□□□ 0.81
NPHP1O15259 GBA2-203ENST00000378103 3611 ntAPPRIS P3 TSL 1 (best) BASIC20.09■□□□□ 0.81
NPHP1O15259 IL12RB2-202ENST00000371000 2454 ntTSL 2 BASIC20.09■□□□□ 0.81
NPHP1O15259 RASSF8-AS1-202ENST00000500276 2610 ntTSL 2 BASIC20.08■□□□□ 0.81
NPHP1O15259 PROC-201ENST00000234071 1773 ntAPPRIS P1 TSL 1 (best) BASIC20.08■□□□□ 0.81
NPHP1O15259 FTSJ1-201ENST00000019019 1986 ntAPPRIS ALT1 TSL 2 BASIC20.08■□□□□ 0.81
NPHP1O15259 TADA1-201ENST00000367874 2159 ntAPPRIS P1 TSL 1 (best) BASIC20.08■□□□□ 0.81
NPHP1O15259 ARL4C-202ENST00000390645 4013 ntAPPRIS P1 BASIC20.08■□□□□ 0.81
NPHP1O15259 MAPK8IP1-202ENST00000395629 3180 ntTSL 5 BASIC20.08■□□□□ 0.81
NPHP1O15259 KLK10-202ENST00000358789 1508 ntAPPRIS P1 TSL 1 (best) BASIC20.08■□□□□ 0.81
NPHP1O15259 NFIX-214ENST00000592199 1509 ntTSL 5 BASIC20.08■□□□□ 0.81
NPHP1O15259 FLAD1-203ENST00000315144 1730 ntAPPRIS P1 TSL 1 (best) BASIC20.08■□□□□ 0.81
NPHP1O15259 ZDHHC24-201ENST00000310442 4721 ntAPPRIS P1 TSL 1 (best) BASIC20.08■□□□□ 0.81
NPHP1O15259 STOX1-204ENST00000399169 3281 ntAPPRIS P1 TSL 1 (best) BASIC20.08■□□□□ 0.81
NPHP1O15259 LGI4-202ENST00000392225 2891 ntTSL 5 BASIC20.08■□□□□ 0.81
NPHP1O15259 EIF4E-201ENST00000280892 1097 ntTSL 1 (best) BASIC20.08■□□□□ 0.81
NPHP1O15259 IGHV3-35-201ENST00000390617 366 ntAPPRIS P1 BASIC20.08■□□□□ 0.81
NPHP1O15259 HOXB-AS1-201ENST00000435312 806 ntTSL 5 BASIC20.08■□□□□ 0.81
NPHP1O15259 MACROD2-AS1-202ENST00000455291 663 ntTSL 2 BASIC20.08■□□□□ 0.81
NPHP1O15259 KLC4-205ENST00000458460 1251 ntTSL 1 (best) BASIC20.08■□□□□ 0.81
NPHP1O15259 PDCD6-202ENST00000505221 672 ntTSL 3 BASIC20.08■□□□□ 0.81
NPHP1O15259 AL122035.1-201ENST00000556640 550 ntTSL 2 BASIC20.08■□□□□ 0.81
NPHP1O15259 AC079336.2-201ENST00000578408 927 ntTSL 3 BASIC20.08■□□□□ 0.81
NPHP1O15259 ABBA01031660.1-201ENST00000635219 756 ntBASIC20.08■□□□□ 0.81
NPHP1O15259 AL391650.2-201ENST00000640097 941 ntTSL 5 BASIC20.08■□□□□ 0.81
NPHP1O15259 TMC5-202ENST00000381414 4755 ntTSL 1 (best) BASIC20.08■□□□□ 0.8
NPHP1O15259 NBEAL2-205ENST00000450053 8827 ntAPPRIS P1 TSL 2 BASIC20.08■□□□□ 0.8
NPHP1O15259 TSHZ1-204ENST00000580243 3582 ntAPPRIS P1 TSL 2 BASIC20.08■□□□□ 0.8
NPHP1O15259 ACAT2-201ENST00000367048 3180 ntAPPRIS P1 TSL 1 (best) BASIC20.08■□□□□ 0.8
NPHP1O15259 GPS1-226ENST00000623691 1839 ntAPPRIS ALT1 TSL 5 BASIC20.08■□□□□ 0.8
NPHP1O15259 ADRB3-201ENST00000345060 2950 ntAPPRIS P1 TSL 1 (best) BASIC20.08■□□□□ 0.8
NPHP1O15259 CD99P1-204ENST00000435581 2788 ntTSL 2 BASIC20.08■□□□□ 0.8
NPHP1O15259 WASF1-206ENST00000392588 3122 ntAPPRIS P1 TSL 5 BASIC20.08■□□□□ 0.8
NPHP1O15259 TMEM140-201ENST00000275767 1997 ntAPPRIS P1 TSL 1 (best) BASIC20.08■□□□□ 0.8
NPHP1O15259 SERPINA4-202ENST00000555095 1987 ntAPPRIS P1 TSL 1 (best) BASIC20.08■□□□□ 0.8
NPHP1O15259 ISPD-202ENST00000407010 5524 ntAPPRIS P1 TSL 5 BASIC20.08■□□□□ 0.8
NPHP1O15259 PTPN21-201ENST00000328736 6089 ntAPPRIS P1 TSL 1 (best) BASIC20.08■□□□□ 0.8
NPHP1O15259 DNAJB8-AS1-201ENST00000471626 1798 ntTSL 2 BASIC20.08■□□□□ 0.8
NPHP1O15259 TBP-207ENST00000616883 1750 ntAPPRIS ALT2 TSL 5 BASIC20.08■□□□□ 0.8
NPHP1O15259 ASAH1-240ENST00000636997 1774 ntTSL 5 BASIC20.08■□□□□ 0.8
NPHP1O15259 COL9A1-201ENST00000320755 3059 ntTSL 1 (best) BASIC20.08■□□□□ 0.8
NPHP1O15259 DUSP14-204ENST00000613659 1559 ntAPPRIS P1 TSL 2 BASIC20.08■□□□□ 0.8
NPHP1O15259 PRCC-201ENST00000271526 2105 ntAPPRIS P1 TSL 1 (best) BASIC20.08■□□□□ 0.8
NPHP1O15259 C8orf33-201ENST00000331434 2677 ntAPPRIS P1 TSL 1 (best) BASIC20.08■□□□□ 0.8
NPHP1O15259 SCAF1-201ENST00000360565 4306 ntAPPRIS P2 TSL 2 BASIC20.08■□□□□ 0.8
NPHP1O15259 TAX1BP1-201ENST00000265393 2478 ntAPPRIS ALT2 TSL 1 (best) BASIC20.08■□□□□ 0.8
NPHP1O15259 CRTC3-202ENST00000420329 5209 ntAPPRIS ALT1 TSL 2 BASIC20.08■□□□□ 0.8
NPHP1O15259 RERG-209ENST00000546331 1383 ntTSL 2 BASIC20.08■□□□□ 0.8
NPHP1O15259 PRR5-218ENST00000624862 1900 ntTSL 5 BASIC20.08■□□□□ 0.8
NPHP1O15259 AGPS-201ENST00000264167 7764 ntAPPRIS P1 TSL 1 (best) BASIC20.08■□□□□ 0.8
NPHP1O15259 PTPRO-209ENST00000543886 2070 ntTSL 1 (best) BASIC20.07■□□□□ 0.8
NPHP1O15259 AL645608.8-201ENST00000606034 2086 ntBASIC20.07■□□□□ 0.8
NPHP1O15259 SRPX-201ENST00000378533 1874 ntAPPRIS P3 TSL 1 (best) BASIC20.07■□□□□ 0.8
NPHP1O15259 CYP2R1-201ENST00000334636 2235 ntAPPRIS P1 TSL 1 (best) BASIC20.07■□□□□ 0.8
NPHP1O15259 POMP-201ENST00000380842 1330 ntAPPRIS P1 TSL 1 (best) BASIC20.07■□□□□ 0.8
NPHP1O15259 G6PD-203ENST00000393564 1661 ntAPPRIS ALT2 TSL 5 BASIC20.07■□□□□ 0.8
NPHP1O15259 AC005498.3-201ENST00000596587 2045 ntTSL 1 (best) BASIC20.07■□□□□ 0.8
NPHP1O15259 TUBB6-211ENST00000591208 1492 ntTSL 5 BASIC20.07■□□□□ 0.8
NPHP1O15259 PLEKHA8-205ENST00000449726 7835 ntAPPRIS P1 TSL 1 (best) BASIC20.07■□□□□ 0.8
NPHP1O15259 Z97205.2-201ENST00000564697 1639 ntBASIC20.07■□□□□ 0.8
NPHP1O15259 SLC26A5-202ENST00000339444 2474 ntTSL 1 (best) BASIC20.07■□□□□ 0.8
NPHP1O15259 PKIG-203ENST00000372887 769 ntTSL 3 BASIC20.07■□□□□ 0.8
NPHP1O15259 APOC3-202ENST00000375345 604 ntTSL 5 BASIC20.07■□□□□ 0.8
NPHP1O15259 RABL2A-203ENST00000393166 1052 ntAPPRIS P3 TSL 1 (best) BASIC20.07■□□□□ 0.8
NPHP1O15259 LINC01273-201ENST00000411453 685 ntTSL 2 BASIC20.07■□□□□ 0.8
Retrieved 100 of 98,524 protein–RNA pairs in 55.5 ms