Protein–RNA interactions for Protein: O60609

GFRA3, GDNF family receptor alpha-3, humanhuman

Predictions only

Length 400 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
GFRA3O60609 PRR25-201ENST00000301698 1209 ntAPPRIS P1 TSL 1 (best) BASIC23.35■■□□□ 1.33
GFRA3O60609 PYY-201ENST00000360085 1053 ntAPPRIS P2 TSL 1 (best) BASIC23.35■■□□□ 1.33
GFRA3O60609 CENPVL3-201ENST00000417339 864 ntAPPRIS P1 BASIC23.35■■□□□ 1.33
GFRA3O60609 AC068580.1-201ENST00000446489 252 ntTSL 3 BASIC23.35■■□□□ 1.33
GFRA3O60609 AC104986.2-201ENST00000521696 380 ntTSL 2 BASIC23.35■■□□□ 1.33
GFRA3O60609 AC092171.4-201ENST00000609130 632 ntBASIC23.35■■□□□ 1.33
GFRA3O60609 TSPAN4-203ENST00000397397 1423 ntAPPRIS P1 TSL 1 (best) BASIC23.34■■□□□ 1.33
GFRA3O60609 TNFRSF25-205ENST00000377782 1632 ntAPPRIS P4 TSL 1 (best) BASIC23.34■■□□□ 1.33
GFRA3O60609 CDC37L1-202ENST00000381858 1244 ntTSL 5 BASIC23.34■■□□□ 1.33
GFRA3O60609 BCAP29-209ENST00000465919 942 ntTSL 2 BASIC23.34■■□□□ 1.33
GFRA3O60609 AES-207ENST00000586839 942 ntTSL 1 (best) BASIC23.34■■□□□ 1.33
GFRA3O60609 AL138963.3-201ENST00000610057 588 ntTSL 4 BASIC23.34■■□□□ 1.33
GFRA3O60609 CAMK1D-203ENST00000615792 1725 ntTSL 5 BASIC23.33■■□□□ 1.33
GFRA3O60609 FHL2-202ENST00000344213 1769 ntTSL 1 (best) BASIC23.33■■□□□ 1.33
GFRA3O60609 GP9-201ENST00000307395 889 ntAPPRIS P1 TSL 1 (best) BASIC23.33■■□□□ 1.33
GFRA3O60609 NXNL2-201ENST00000375854 805 ntAPPRIS P1 TSL 5 BASIC23.33■■□□□ 1.33
GFRA3O60609 YJEFN3-201ENST00000436027 878 ntAPPRIS P1 TSL 1 (best) BASIC23.33■■□□□ 1.33
GFRA3O60609 SLC39A3-203ENST00000545664 1219 ntTSL 2 BASIC23.33■■□□□ 1.33
GFRA3O60609 NDUFV2-AS1-201ENST00000582375 770 ntTSL 2 BASIC23.33■■□□□ 1.33
GFRA3O60609 ARHGDIA-217ENST00000584461 886 ntTSL 2 BASIC23.33■■□□□ 1.33
GFRA3O60609 MYDGF-203ENST00000599630 713 ntTSL 2 BASIC23.33■■□□□ 1.33
GFRA3O60609 ACAP1-206ENST00000571471 320 ntTSL 2 BASIC23.32■■□□□ 1.32
GFRA3O60609 SNX5-217ENST00000606557 1087 ntBASIC23.32■■□□□ 1.32
GFRA3O60609 AL031602.1-201ENST00000633169 911 ntBASIC23.32■■□□□ 1.32
GFRA3O60609 YBX1P1-201ENST00000445822 960 ntBASIC23.31■■□□□ 1.32
GFRA3O60609 MEIS1-AS3-201ENST00000454167 707 ntTSL 4 BASIC23.31■■□□□ 1.32
GFRA3O60609 DUX4L2-201ENST00000561772 1275 ntBASIC23.31■■□□□ 1.32
GFRA3O60609 DUX4-206ENST00000616166 1275 ntAPPRIS P2 BASIC23.31■■□□□ 1.32
GFRA3O60609 DUX4L6-201ENST00000626483 1275 ntBASIC23.31■■□□□ 1.32
GFRA3O60609 DUX4L1-201ENST00000627662 1275 ntBASIC23.31■■□□□ 1.32
GFRA3O60609 DUX4L8-201ENST00000629013 1275 ntBASIC23.31■■□□□ 1.32
GFRA3O60609 DUX4L3-201ENST00000630187 1275 ntBASIC23.31■■□□□ 1.32
GFRA3O60609 DUX4L7-201ENST00000630678 1275 ntBASIC23.31■■□□□ 1.32
GFRA3O60609 DUX4L5-201ENST00000630834 1275 ntBASIC23.31■■□□□ 1.32
GFRA3O60609 MOB4-204ENST00000409360 1447 ntTSL 5 BASIC23.31■■□□□ 1.32
GFRA3O60609 GXYLT1P2-201ENST00000433312 1230 ntBASIC23.3■■□□□ 1.32
GFRA3O60609 YJEFN3-203ENST00000514277 995 ntTSL 1 (best) BASIC23.3■■□□□ 1.32
GFRA3O60609 CBWD3-212ENST00000616550 721 ntTSL 2 BASIC23.3■■□□□ 1.32
GFRA3O60609 CBWD6-216ENST00000617933 721 ntTSL 3 BASIC23.3■■□□□ 1.32
GFRA3O60609 C1orf35-201ENST00000272139 1427 ntAPPRIS P1 TSL 1 (best) BASIC23.3■■□□□ 1.32
GFRA3O60609 CCDC136-202ENST00000378685 1689 ntAPPRIS ALT2 TSL 2 BASIC23.29■■□□□ 1.32
GFRA3O60609 NT5C-201ENST00000245552 954 ntAPPRIS P1 TSL 1 (best) BASIC23.29■■□□□ 1.32
GFRA3O60609 CCDC28B-201ENST00000373602 1089 ntAPPRIS P1 TSL 1 (best) BASIC23.29■■□□□ 1.32
GFRA3O60609 IZUMO4-203ENST00000395307 944 ntAPPRIS P3 TSL 1 (best) BASIC23.29■■□□□ 1.32
GFRA3O60609 TK2-208ENST00000545043 1120 ntTSL 2 BASIC23.29■■□□□ 1.32
GFRA3O60609 F8A1-201ENST00000610495 1713 ntAPPRIS P1 BASIC23.29■■□□□ 1.32
GFRA3O60609 TRIM2-212ENST00000632856 656 ntTSL 3 BASIC23.29■■□□□ 1.32
GFRA3O60609 PYGO2-201ENST00000368456 1306 ntTSL 2 BASIC23.29■■□□□ 1.32
GFRA3O60609 SLC35A3-216ENST00000639221 1032 ntTSL 5 BASIC23.28■■□□□ 1.32
GFRA3O60609 CDK2AP1-201ENST00000261692 1625 ntAPPRIS P1 TSL 1 (best) BASIC23.27■■□□□ 1.32
GFRA3O60609 CASP9-201ENST00000333868 2019 ntAPPRIS P2 TSL 1 (best) BASIC23.27■■□□□ 1.32
GFRA3O60609 SERBP1P1-201ENST00000396021 1160 ntBASIC23.27■■□□□ 1.32
GFRA3O60609 PYCR3-203ENST00000433751 1000 ntAPPRIS ALT2 TSL 2 BASIC23.27■■□□□ 1.32
GFRA3O60609 ATOX1-207ENST00000524142 749 ntAPPRIS P1 TSL 5 BASIC23.27■■□□□ 1.32
GFRA3O60609 MMP25-204ENST00000612971 1017 ntTSL 5 BASIC23.27■■□□□ 1.32
GFRA3O60609 AC010999.2-201ENST00000621974 596 ntTSL 2 BASIC23.27■■□□□ 1.32
GFRA3O60609 TMEM150A-201ENST00000306353 1484 ntTSL 1 (best) BASIC23.27■■□□□ 1.32
GFRA3O60609 NELFB-202ENST00000634710 1887 ntAPPRIS P2 TSL 1 (best) BASIC23.27■■□□□ 1.32
GFRA3O60609 CCDC136-206ENST00000464832 1720 ntAPPRIS ALT2 TSL 5 BASIC23.27■■□□□ 1.32
GFRA3O60609 GMPPB-202ENST00000308388 1582 ntAPPRIS P1 TSL 1 (best) BASIC23.27■■□□□ 1.32
GFRA3O60609 ATP6V0B-205ENST00000472174 1298 ntAPPRIS P1 TSL 1 (best) BASIC23.26■■□□□ 1.31
GFRA3O60609 AL583722.4-201ENST00000555524 716 ntTSL 3 BASIC23.26■■□□□ 1.31
GFRA3O60609 NDUFA6-AS1-207ENST00000595777 833 ntTSL 5 BASIC23.26■■□□□ 1.31
GFRA3O60609 SHOX2-204ENST00000483851 1866 ntAPPRIS ALT2 TSL 2 BASIC23.26■■□□□ 1.31
GFRA3O60609 KAT5-208ENST00000530446 1697 ntTSL 1 (best) BASIC23.25■■□□□ 1.31
GFRA3O60609 BCKDHB-202ENST00000356489 1514 ntAPPRIS P1 TSL 1 (best) BASIC23.25■■□□□ 1.31
GFRA3O60609 PYCARD-201ENST00000247470 990 ntAPPRIS P1 TSL 1 (best) BASIC23.25■■□□□ 1.31
GFRA3O60609 GADD45A-201ENST00000370985 803 ntTSL 1 (best) BASIC23.25■■□□□ 1.31
GFRA3O60609 EMC9-206ENST00000560403 872 ntTSL 2 BASIC23.25■■□□□ 1.31
GFRA3O60609 H2AFB3-201ENST00000615853 591 ntAPPRIS P1 BASIC23.25■■□□□ 1.31
GFRA3O60609 TMEM187-201ENST00000369982 1880 ntAPPRIS P1 TSL 1 (best) BASIC23.25■■□□□ 1.31
GFRA3O60609 GADD45G-202ENST00000375769 977 ntTSL 2 BASIC23.24■■□□□ 1.31
GFRA3O60609 ATE1-AS1-201ENST00000437593 951 ntTSL 2 BASIC23.24■■□□□ 1.31
GFRA3O60609 NRIP3-203ENST00000531090 980 ntTSL 2 BASIC23.24■■□□□ 1.31
GFRA3O60609 HAS1-203ENST00000594621 760 ntTSL 1 (best) BASIC23.24■■□□□ 1.31
GFRA3O60609 PEX11G-203ENST00000593942 1345 ntTSL 5 BASIC23.24■■□□□ 1.31
GFRA3O60609 SPATA22-214ENST00000575375 1374 ntAPPRIS P1 TSL 1 (best) BASIC23.24■■□□□ 1.31
GFRA3O60609 NABP2-202ENST00000341463 1411 ntAPPRIS P1 TSL 3 BASIC23.24■■□□□ 1.31
GFRA3O60609 PPP1CC-208ENST00000551676 1581 ntTSL 2 BASIC23.23■■□□□ 1.31
GFRA3O60609 CREB3L2-203ENST00000452463 1105 ntTSL 1 (best) BASIC23.23■■□□□ 1.31
GFRA3O60609 ZNF846-212ENST00000592859 1206 ntTSL 2 BASIC23.23■■□□□ 1.31
GFRA3O60609 SPEF1-201ENST00000379756 1580 ntAPPRIS P1 TSL 1 (best) BASIC23.23■■□□□ 1.31
GFRA3O60609 CTF1-202ENST00000395019 1617 ntAPPRIS ALT1 TSL 1 (best) BASIC23.22■■□□□ 1.31
GFRA3O60609 ACOT7-201ENST00000361521 2429 ntAPPRIS ALT2 TSL 1 (best) BASIC23.22■■□□□ 1.31
GFRA3O60609 SH3GL3-202ENST00000427482 1806 ntAPPRIS P1 TSL 1 (best) BASIC23.22■■□□□ 1.31
GFRA3O60609 SLC52A2-201ENST00000329994 1896 ntAPPRIS P1 TSL 1 (best) BASIC23.22■■□□□ 1.31
GFRA3O60609 TRIR-201ENST00000242784 970 ntAPPRIS P1 TSL 1 (best) BASIC23.22■■□□□ 1.31
GFRA3O60609 MRPL14-201ENST00000372014 959 ntAPPRIS P1 TSL 1 (best) BASIC23.22■■□□□ 1.31
GFRA3O60609 ASPDH-202ENST00000389208 1040 ntAPPRIS P1 TSL 5 BASIC23.22■■□□□ 1.31
GFRA3O60609 TMEM41B-205ENST00000533723 723 ntTSL 2 BASIC23.22■■□□□ 1.31
GFRA3O60609 UTS2R-201ENST00000313135 1357 ntAPPRIS P1 BASIC23.22■■□□□ 1.31
GFRA3O60609 PHF11-202ENST00000378319 1359 ntAPPRIS P3 TSL 1 (best) BASIC23.22■■□□□ 1.31
GFRA3O60609 UBALD2-201ENST00000327490 1593 ntAPPRIS P1 TSL 1 (best) BASIC23.22■■□□□ 1.31
GFRA3O60609 DIRAS1-202ENST00000585334 774 ntAPPRIS P1 BASIC23.21■■□□□ 1.31
GFRA3O60609 HRH3-203ENST00000611492 900 ntTSL 1 (best) BASIC23.21■■□□□ 1.31
GFRA3O60609 RAB43-208ENST00000615093 783 ntTSL 5 BASIC23.21■■□□□ 1.31
GFRA3O60609 AC011298.3-201ENST00000615796 283 ntBASIC23.21■■□□□ 1.31
GFRA3O60609 AC243829.1-202ENST00000618848 486 ntTSL 3 BASIC23.21■■□□□ 1.31
GFRA3O60609 CDPF1-201ENST00000314567 1875 ntAPPRIS P2 TSL 1 (best) BASIC23.2■■□□□ 1.3
GFRA3O60609 POLE2-201ENST00000216367 1776 ntAPPRIS P1 TSL 1 (best) BASIC23.2■■□□□ 1.3
Retrieved 100 of 98,524 protein–RNA pairs in 13.5 ms