Protein–RNA interactions for Protein: Q9UPM8

AP4E1, AP-4 complex subunit epsilon-1, humanhuman

Predictions only

Length 1,137 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
AP4E1Q9UPM8 AC007406.4-201ENST00000539568 765 ntTSL 1 (best) BASIC16.59■□□□□ 0.25
AP4E1Q9UPM8 KLK3-204ENST00000593997 1035 ntTSL 1 (best) BASIC16.59■□□□□ 0.25
AP4E1Q9UPM8 AL133215.2-201ENST00000609242 977 ntBASIC16.59■□□□□ 0.25
AP4E1Q9UPM8 DUOXA1-202ENST00000430224 1317 ntTSL 1 (best) BASIC16.59■□□□□ 0.25
AP4E1Q9UPM8 AKAP9-205ENST00000394564 1356 ntTSL 1 (best) BASIC16.59■□□□□ 0.25
AP4E1Q9UPM8 MAPKAP1-202ENST00000350766 3256 ntTSL 1 (best) BASIC16.59■□□□□ 0.25
AP4E1Q9UPM8 RAI2-206ENST00000545871 2421 ntAPPRIS P1 TSL 4 BASIC16.59■□□□□ 0.25
AP4E1Q9UPM8 MAGI1-202ENST00000402939 4389 ntAPPRIS ALT2 TSL 1 (best) BASIC16.59■□□□□ 0.25
AP4E1Q9UPM8 ANKRD2-203ENST00000370655 1451 ntTSL 1 (best) BASIC16.59■□□□□ 0.25
AP4E1Q9UPM8 TAGLN3-202ENST00000393917 1488 ntAPPRIS P1 TSL 5 BASIC16.59■□□□□ 0.25
AP4E1Q9UPM8 HACD3-206ENST00000565299 1465 ntTSL 5 BASIC16.59■□□□□ 0.25
AP4E1Q9UPM8 ALPL-204ENST00000374840 2589 ntAPPRIS P3 TSL 1 (best) BASIC16.59■□□□□ 0.25
AP4E1Q9UPM8 LYAR-201ENST00000343470 1569 ntAPPRIS P2 TSL 1 (best) BASIC16.59■□□□□ 0.25
AP4E1Q9UPM8 RIMS1-210ENST00000491071 5047 ntTSL 5 BASIC16.59■□□□□ 0.25
AP4E1Q9UPM8 FAM156B-202ENST00000509613 1701 ntAPPRIS P2 TSL 2 BASIC16.59■□□□□ 0.25
AP4E1Q9UPM8 SNRPD3-201ENST00000215829 1763 ntAPPRIS P1 TSL 1 (best) BASIC16.59■□□□□ 0.25
AP4E1Q9UPM8 COL26A1-201ENST00000313669 3033 ntAPPRIS P2 TSL 1 (best) BASIC16.59■□□□□ 0.25
AP4E1Q9UPM8 LINC00391-201ENST00000433569 1844 ntTSL 5 BASIC16.59■□□□□ 0.25
AP4E1Q9UPM8 TNKS1BP1-207ENST00000532437 5952 ntAPPRIS P2 TSL 1 (best) BASIC16.58■□□□□ 0.25
AP4E1Q9UPM8 PCBP4-205ENST00000461554 2147 ntAPPRIS P1 TSL 1 (best) BASIC16.58■□□□□ 0.25
AP4E1Q9UPM8 GPR61-206ENST00000616874 2459 ntAPPRIS P1 TSL 2 BASIC16.58■□□□□ 0.25
AP4E1Q9UPM8 SCARB1-202ENST00000339570 3329 ntTSL 5 BASIC16.58■□□□□ 0.24
AP4E1Q9UPM8 SMARCD1-202ENST00000394963 3658 ntAPPRIS P1 TSL 1 (best) BASIC16.58■□□□□ 0.24
AP4E1Q9UPM8 RPS19-201ENST00000221975 500 ntTSL 3 BASIC16.58■□□□□ 0.24
AP4E1Q9UPM8 CA4-201ENST00000300900 1154 ntAPPRIS P1 TSL 1 (best) BASIC16.58■□□□□ 0.24
AP4E1Q9UPM8 SPEM1-201ENST00000323675 982 ntAPPRIS P1 TSL 1 (best) BASIC16.58■□□□□ 0.24
AP4E1Q9UPM8 LRRC28-202ENST00000331450 752 ntTSL 1 (best) BASIC16.58■□□□□ 0.24
AP4E1Q9UPM8 RAB17-204ENST00000409822 1077 ntTSL 5 BASIC16.58■□□□□ 0.24
AP4E1Q9UPM8 RNF183-202ENST00000416588 849 ntAPPRIS P1 TSL 3 BASIC16.58■□□□□ 0.24
AP4E1Q9UPM8 SNHG17-203ENST00000417578 880 ntTSL 2 BASIC16.58■□□□□ 0.24
AP4E1Q9UPM8 TMEM191A-202ENST00000419950 663 ntTSL 3 BASIC16.58■□□□□ 0.24
AP4E1Q9UPM8 CDH23-AS1-201ENST00000428918 378 ntTSL 2 BASIC16.58■□□□□ 0.24
AP4E1Q9UPM8 PRRT3-AS1-201ENST00000431558 614 ntTSL 2 BASIC16.58■□□□□ 0.24
AP4E1Q9UPM8 ZFAND2B-212ENST00000444522 1199 ntAPPRIS P1 TSL 5 BASIC16.58■□□□□ 0.24
AP4E1Q9UPM8 URGCP-206ENST00000446958 365 ntTSL 2 BASIC16.58■□□□□ 0.24
AP4E1Q9UPM8 TPT1-AS1-219ENST00000523506 574 ntTSL 4 BASIC16.58■□□□□ 0.24
AP4E1Q9UPM8 VPS29-207ENST00000549970 818 ntTSL 3 BASIC16.58■□□□□ 0.24
AP4E1Q9UPM8 NDRG4-247ENST00000568640 1281 ntTSL 2 BASIC16.58■□□□□ 0.24
AP4E1Q9UPM8 RPS19-202ENST00000593863 526 ntAPPRIS P1 TSL 3 BASIC16.58■□□□□ 0.24
AP4E1Q9UPM8 AL022328.4-201ENST00000608025 1001 ntTSL 2 BASIC16.58■□□□□ 0.24
AP4E1Q9UPM8 Z92544.3-201ENST00000624747 417 ntBASIC16.58■□□□□ 0.24
AP4E1Q9UPM8 IL12RB2-201ENST00000262345 4040 ntAPPRIS P1 TSL 1 (best) BASIC16.58■□□□□ 0.24
AP4E1Q9UPM8 GADD45B-201ENST00000215631 1373 ntAPPRIS P1 TSL 1 (best) BASIC16.58■□□□□ 0.24
AP4E1Q9UPM8 MYRIP-202ENST00000396217 4877 ntTSL 1 (best) BASIC16.58■□□□□ 0.24
AP4E1Q9UPM8 ASAH1-240ENST00000636997 1774 ntTSL 5 BASIC16.58■□□□□ 0.24
AP4E1Q9UPM8 SLC34A1-204ENST00000512593 1912 ntTSL 2 BASIC16.58■□□□□ 0.24
AP4E1Q9UPM8 C14orf93-207ENST00000397382 1986 ntAPPRIS P1 TSL 5 BASIC16.58■□□□□ 0.24
AP4E1Q9UPM8 Z99756.1-201ENST00000458463 1951 ntTSL 1 (best) BASIC16.58■□□□□ 0.24
AP4E1Q9UPM8 GFOD2-203ENST00000602377 1991 ntTSL 4 BASIC16.58■□□□□ 0.24
AP4E1Q9UPM8 MAGEA2-208ENST00000623438 2009 ntAPPRIS P1 TSL 2 BASIC16.58■□□□□ 0.24
AP4E1Q9UPM8 GDF5-201ENST00000374369 2383 ntAPPRIS P1 TSL 1 (best) BASIC16.58■□□□□ 0.24
AP4E1Q9UPM8 TFPI2-201ENST00000222543 2444 ntAPPRIS P1 TSL 1 (best) BASIC16.58■□□□□ 0.24
AP4E1Q9UPM8 GPER1-202ENST00000397088 2639 ntAPPRIS P1 TSL 1 (best) BASIC16.58■□□□□ 0.24
AP4E1Q9UPM8 C16orf58-211ENST00000570164 2783 ntAPPRIS ALT1 TSL 5 BASIC16.58■□□□□ 0.24
AP4E1Q9UPM8 WNT2-201ENST00000265441 2907 ntAPPRIS P1 TSL 1 (best) BASIC16.58■□□□□ 0.24
AP4E1Q9UPM8 SYBU-219ENST00000528647 2995 ntAPPRIS P4 TSL 2 BASIC16.58■□□□□ 0.24
AP4E1Q9UPM8 ATP2C1-224ENST00000533801 3690 ntTSL 1 (best) BASIC16.58■□□□□ 0.24
AP4E1Q9UPM8 HACE1-201ENST00000262903 4576 ntAPPRIS P1 TSL 1 (best) BASIC16.58■□□□□ 0.24
AP4E1Q9UPM8 NRG1-202ENST00000356819 5931 ntAPPRIS ALT2 TSL 1 (best) BASIC16.58■□□□□ 0.24
AP4E1Q9UPM8 PLCB1-203ENST00000378641 7323 ntTSL 1 (best) BASIC16.57■□□□□ 0.24
AP4E1Q9UPM8 SNAP91-205ENST00000439399 4452 ntAPPRIS P2 TSL 5 BASIC16.57■□□□□ 0.24
AP4E1Q9UPM8 KLF11-201ENST00000305883 4030 ntAPPRIS P3 TSL 1 (best) BASIC16.57■□□□□ 0.24
AP4E1Q9UPM8 MPPED1-202ENST00000417669 3657 ntAPPRIS P1 TSL 5 BASIC16.57■□□□□ 0.24
AP4E1Q9UPM8 SP2-201ENST00000376741 3112 ntAPPRIS P1 TSL 1 (best) BASIC16.57■□□□□ 0.24
AP4E1Q9UPM8 SOCS2-212ENST00000622746 2881 ntAPPRIS P1 TSL 3 BASIC16.57■□□□□ 0.24
AP4E1Q9UPM8 GAS2L2-201ENST00000604063 2661 ntAPPRIS ALT2 TSL 5 BASIC16.57■□□□□ 0.24
AP4E1Q9UPM8 FOXO3-201ENST00000343882 7308 ntAPPRIS P1 TSL 1 (best) BASIC16.57■□□□□ 0.24
AP4E1Q9UPM8 CHMP1A-202ENST00000535997 2295 ntTSL 2 BASIC16.57■□□□□ 0.24
AP4E1Q9UPM8 MBD4-206ENST00000507208 2194 ntAPPRIS ALT2 TSL 2 BASIC16.57■□□□□ 0.24
AP4E1Q9UPM8 NDRG2-209ENST00000397853 2079 ntAPPRIS P4 TSL 2 BASIC16.57■□□□□ 0.24
AP4E1Q9UPM8 STK4-AS1-201ENST00000434401 2065 ntTSL 2 BASIC16.57■□□□□ 0.24
AP4E1Q9UPM8 BUD13-202ENST00000375445 1793 ntAPPRIS ALT2 TSL 1 (best) BASIC16.57■□□□□ 0.24
AP4E1Q9UPM8 IL18BP-204ENST00000393703 1788 ntAPPRIS P2 TSL 3 BASIC16.57■□□□□ 0.24
AP4E1Q9UPM8 ALOX12-AS1-201ENST00000399540 1730 ntTSL 2 BASIC16.57■□□□□ 0.24
AP4E1Q9UPM8 CLCNKB-204ENST00000619181 1544 ntTSL 5 BASIC16.57■□□□□ 0.24
AP4E1Q9UPM8 OTOL1-201ENST00000327928 1434 ntAPPRIS P1 TSL 2 BASIC16.57■□□□□ 0.24
AP4E1Q9UPM8 KIF5C-201ENST00000435030 6931 ntAPPRIS P1 TSL 1 (best) BASIC16.57■□□□□ 0.24
AP4E1Q9UPM8 NBL1-201ENST00000289749 731 ntAPPRIS ALT2 TSL 2 BASIC16.57■□□□□ 0.24
AP4E1Q9UPM8 POP7-201ENST00000303151 927 ntAPPRIS P1 TSL 1 (best) BASIC16.57■□□□□ 0.24
AP4E1Q9UPM8 LRRC37A5P-201ENST00000374304 1103 ntTSL 1 (best) BASIC16.57■□□□□ 0.24
AP4E1Q9UPM8 RNF186-201ENST00000375121 1250 ntAPPRIS P1 BASIC16.57■□□□□ 0.24
AP4E1Q9UPM8 PSMA8-203ENST00000415576 1280 ntAPPRIS ALT2 TSL 1 (best) BASIC16.57■□□□□ 0.24
AP4E1Q9UPM8 NRSN2-AS1-202ENST00000442637 762 ntTSL 3 BASIC16.57■□□□□ 0.24
AP4E1Q9UPM8 SLBP-205ENST00000488267 987 ntTSL 2 BASIC16.57■□□□□ 0.24
AP4E1Q9UPM8 AC021744.1-201ENST00000518354 453 ntTSL 3 BASIC16.57■□□□□ 0.24
AP4E1Q9UPM8 DCUN1D5-209ENST00000531543 1030 ntTSL 5 BASIC16.57■□□□□ 0.24
AP4E1Q9UPM8 AC004449.1-201ENST00000564240 433 ntBASIC16.57■□□□□ 0.24
AP4E1Q9UPM8 AL450472.2-201ENST00000603663 1156 ntBASIC16.57■□□□□ 0.24
AP4E1Q9UPM8 CACNA2D3-201ENST00000288197 3671 ntAPPRIS ALT2 TSL 1 (best) BASIC16.57■□□□□ 0.24
AP4E1Q9UPM8 CACNA2D3-206ENST00000474759 3675 ntAPPRIS P2 TSL 1 (best) BASIC16.57■□□□□ 0.24
AP4E1Q9UPM8 HAUS3-204ENST00000506763 3166 ntTSL 2 BASIC16.57■□□□□ 0.24
AP4E1Q9UPM8 CICP13-201ENST00000422015 2789 ntBASIC16.57■□□□□ 0.24
AP4E1Q9UPM8 CTNND2-214ENST00000511377 4336 ntTSL 1 (best) BASIC16.57■□□□□ 0.24
AP4E1Q9UPM8 MDGA1-203ENST00000434837 10736 ntAPPRIS P1 TSL 1 (best) BASIC16.57■□□□□ 0.24
AP4E1Q9UPM8 FLII-221ENST00000578558 2377 ntTSL 5 BASIC16.57■□□□□ 0.24
AP4E1Q9UPM8 LFNG-204ENST00000402045 2058 ntTSL 1 (best) BASIC16.57■□□□□ 0.24
AP4E1Q9UPM8 GK2-201ENST00000358842 1942 ntAPPRIS P1 BASIC16.57■□□□□ 0.24
AP4E1Q9UPM8 DNM1-208ENST00000486160 3181 ntAPPRIS ALT1 TSL 1 (best) BASIC16.57■□□□□ 0.24
AP4E1Q9UPM8 ANXA8-203ENST00000583874 1860 ntTSL 1 (best) BASIC16.56■□□□□ 0.24
AP4E1Q9UPM8 TSC2-202ENST00000350773 5532 ntAPPRIS ALT2 TSL 1 (best) BASIC16.56■□□□□ 0.24
Retrieved 100 of 98,524 protein–RNA pairs in 40 ms