Protein–RNA interactions for Protein: Q9NXB0

MKS1, Meckel syndrome type 1 protein, humanhuman

Predictions only

Length 559 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
MKS1Q9NXB0 NOX4-215ENST00000534731 2156 ntTSL 1 (best) BASIC15.78■□□□□ 0.12
MKS1Q9NXB0 PPP2R5D-208ENST00000485511 3044 ntAPPRIS P3 TSL 1 (best) BASIC15.78■□□□□ 0.12
MKS1Q9NXB0 DCTN3-201ENST00000259632 808 ntAPPRIS P1 TSL 1 (best) BASIC15.78■□□□□ 0.12
MKS1Q9NXB0 RNF151-201ENST00000321392 786 ntAPPRIS ALT2 TSL 1 (best) BASIC15.78■□□□□ 0.12
MKS1Q9NXB0 PRSS55-201ENST00000328655 1124 ntAPPRIS P1 TSL 1 (best) BASIC15.78■□□□□ 0.12
MKS1Q9NXB0 SYS1-202ENST00000372727 813 ntAPPRIS P1 TSL 3 BASIC15.78■□□□□ 0.12
MKS1Q9NXB0 CXCL1-201ENST00000395761 1097 ntAPPRIS P1 TSL 1 (best) BASIC15.78■□□□□ 0.12
MKS1Q9NXB0 FBXL21-206ENST00000495672 589 ntTSL 4 BASIC15.78■□□□□ 0.12
MKS1Q9NXB0 UNC93B7-201ENST00000509439 705 ntBASIC15.78■□□□□ 0.12
MKS1Q9NXB0 RNF151-203ENST00000569714 796 ntAPPRIS P2 TSL 1 (best) BASIC15.78■□□□□ 0.12
MKS1Q9NXB0 TMEM220-AS1-206ENST00000583343 876 ntTSL 3 BASIC15.78■□□□□ 0.12
MKS1Q9NXB0 MAGEA12-201ENST00000357916 1664 ntAPPRIS P1 TSL 1 (best) BASIC15.78■□□□□ 0.12
MKS1Q9NXB0 NARF-206ENST00000457415 1668 ntTSL 5 BASIC15.78■□□□□ 0.12
MKS1Q9NXB0 HGNC:24955-201ENST00000303177 2452 ntAPPRIS P1 TSL 1 (best) BASIC15.78■□□□□ 0.12
MKS1Q9NXB0 SYT6-201ENST00000369547 4369 ntTSL 1 (best) BASIC15.78■□□□□ 0.12
MKS1Q9NXB0 NFE2L1-214ENST00000582155 1998 ntTSL 2 BASIC15.78■□□□□ 0.12
MKS1Q9NXB0 GULP1-209ENST00000410051 1595 ntTSL 1 (best) BASIC15.78■□□□□ 0.12
MKS1Q9NXB0 CHRNB2-201ENST00000368476 5867 ntAPPRIS P2 TSL 1 (best) BASIC15.78■□□□□ 0.12
MKS1Q9NXB0 ACOX3-203ENST00000503233 2253 ntAPPRIS P1 TSL 1 (best) BASIC15.78■□□□□ 0.12
MKS1Q9NXB0 TGOLN2-205ENST00000409232 2235 ntAPPRIS ALT2 TSL 1 (best) BASIC15.78■□□□□ 0.12
MKS1Q9NXB0 B3GALNT1-203ENST00000392781 3606 ntAPPRIS P1 TSL 1 (best) BASIC15.77■□□□□ 0.12
MKS1Q9NXB0 NPY5R-203ENST00000515560 3183 ntAPPRIS P1 TSL 2 BASIC15.77■□□□□ 0.12
MKS1Q9NXB0 KCTD1-203ENST00000417602 1705 ntAPPRIS P1 TSL 5 BASIC15.77■□□□□ 0.12
MKS1Q9NXB0 MOB3B-201ENST00000262244 6454 ntAPPRIS P1 TSL 1 (best) BASIC15.77■□□□□ 0.12
MKS1Q9NXB0 SCART1-206ENST00000640237 4351 ntAPPRIS P1 TSL 5 BASIC15.77■□□□□ 0.12
MKS1Q9NXB0 UGT3A1-204ENST00000507113 1650 ntTSL 2 BASIC15.77■□□□□ 0.12
MKS1Q9NXB0 FOXS1-201ENST00000375978 1319 ntAPPRIS P1 BASIC15.77■□□□□ 0.12
MKS1Q9NXB0 ARHGEF40-201ENST00000298694 5919 ntAPPRIS P1 TSL 2 BASIC15.77■□□□□ 0.12
MKS1Q9NXB0 XRCC1-202ENST00000543982 1994 ntTSL 2 BASIC15.77■□□□□ 0.12
MKS1Q9NXB0 SLC4A2-214ENST00000485713 4925 ntAPPRIS P3 TSL 1 (best) BASIC15.77■□□□□ 0.12
MKS1Q9NXB0 EPS8L2-223ENST00000533256 3266 ntAPPRIS P2 TSL 5 BASIC15.77■□□□□ 0.12
MKS1Q9NXB0 ZNF557-201ENST00000252840 2268 ntAPPRIS P3 TSL 1 (best) BASIC15.77■□□□□ 0.12
MKS1Q9NXB0 GHSR-201ENST00000241256 1172 ntAPPRIS P1 TSL 1 (best) BASIC15.77■□□□□ 0.12
MKS1Q9NXB0 HRCT1-201ENST00000354323 950 ntAPPRIS P1 BASIC15.77■□□□□ 0.12
MKS1Q9NXB0 SDR39U1-201ENST00000399395 1233 ntAPPRIS P1 TSL 1 (best) BASIC15.77■□□□□ 0.12
MKS1Q9NXB0 GSTK1-207ENST00000479303 1185 ntTSL 1 (best) BASIC15.77■□□□□ 0.12
MKS1Q9NXB0 NPM2-204ENST00000518119 1190 ntAPPRIS P2 TSL 1 (best) BASIC15.77■□□□□ 0.12
MKS1Q9NXB0 AC131009.1-201ENST00000539078 426 ntTSL 5 BASIC15.77■□□□□ 0.12
MKS1Q9NXB0 AQP6-205ENST00000618286 829 ntTSL 5 BASIC15.77■□□□□ 0.12
MKS1Q9NXB0 AC012313.10-201ENST00000623509 926 ntBASIC15.77■□□□□ 0.12
MKS1Q9NXB0 BICDL1-201ENST00000397558 3055 ntAPPRIS P1 TSL 5 BASIC15.77■□□□□ 0.11
MKS1Q9NXB0 HHIPL1-201ENST00000330710 7390 ntAPPRIS P1 TSL 1 (best) BASIC15.77■□□□□ 0.11
MKS1Q9NXB0 FOXO1B-201ENST00000504678 1527 ntBASIC15.77■□□□□ 0.11
MKS1Q9NXB0 CAAP1-206ENST00000625311 1532 ntTSL 2 BASIC15.77■□□□□ 0.11
MKS1Q9NXB0 MAMSTR-201ENST00000318083 1837 ntAPPRIS P1 TSL 2 BASIC15.77■□□□□ 0.11
MKS1Q9NXB0 INTS4P1-202ENST00000587624 2985 ntTSL 5 BASIC15.77■□□□□ 0.11
MKS1Q9NXB0 KTN1-AS1-201ENST00000335142 1465 ntTSL 1 (best) BASIC15.77■□□□□ 0.11
MKS1Q9NXB0 PCGF2-206ENST00000618941 1499 ntTSL 5 BASIC15.77■□□□□ 0.11
MKS1Q9NXB0 USP13-201ENST00000263966 8323 ntAPPRIS P1 TSL 1 (best) BASIC15.77■□□□□ 0.11
MKS1Q9NXB0 CERNA1-202ENST00000560518 1972 ntTSL 2 BASIC15.76■□□□□ 0.11
MKS1Q9NXB0 ZEB1-AS1-208ENST00000607166 2503 ntBASIC15.76■□□□□ 0.11
MKS1Q9NXB0 CABP1-201ENST00000288616 1369 ntAPPRIS P4 TSL 1 (best) BASIC15.76■□□□□ 0.11
MKS1Q9NXB0 RALYL-207ENST00000521695 1924 ntAPPRIS ALT2 TSL 2 BASIC15.76■□□□□ 0.11
MKS1Q9NXB0 AC026748.1-201ENST00000624349 3251 ntBASIC15.76■□□□□ 0.11
MKS1Q9NXB0 NDUFA11-202ENST00000418389 2406 ntTSL 2 BASIC15.76■□□□□ 0.11
MKS1Q9NXB0 BCAR1-207ENST00000538440 3192 ntAPPRIS ALT2 TSL 2 BASIC15.76■□□□□ 0.11
MKS1Q9NXB0 ATP5B-201ENST00000262030 1839 ntAPPRIS P1 TSL 1 (best) BASIC15.76■□□□□ 0.11
MKS1Q9NXB0 AC018755.2-201ENST00000599649 1837 ntAPPRIS P1 TSL 1 (best) BASIC15.76■□□□□ 0.11
MKS1Q9NXB0 WNT16-201ENST00000222462 3147 ntAPPRIS P1 TSL 1 (best) BASIC15.76■□□□□ 0.11
MKS1Q9NXB0 CLIC6-202ENST00000360731 3860 ntAPPRIS ALT2 TSL 1 (best) BASIC15.76■□□□□ 0.11
MKS1Q9NXB0 RBM46-204ENST00000514866 2315 ntTSL 2 BASIC15.76■□□□□ 0.11
MKS1Q9NXB0 EP400-203ENST00000333577 3092 ntTSL 1 (best) BASIC15.76■□□□□ 0.11
MKS1Q9NXB0 NUPR2-201ENST00000329309 603 ntAPPRIS P1 TSL 1 (best) BASIC15.76■□□□□ 0.11
MKS1Q9NXB0 GUK1-202ENST00000366716 940 ntAPPRIS P3 TSL 1 (best) BASIC15.76■□□□□ 0.11
MKS1Q9NXB0 COPS7B-207ENST00000410024 1103 ntAPPRIS P1 TSL 2 BASIC15.76■□□□□ 0.11
MKS1Q9NXB0 LINC00398-201ENST00000414407 906 ntTSL 2 BASIC15.76■□□□□ 0.11
MKS1Q9NXB0 CRCP-205ENST00000431089 942 ntTSL 2 BASIC15.76■□□□□ 0.11
MKS1Q9NXB0 PPIE-208ENST00000470213 927 ntTSL 3 BASIC15.76■□□□□ 0.11
MKS1Q9NXB0 AC100810.1-201ENST00000518822 978 ntTSL 2 BASIC15.76■□□□□ 0.11
MKS1Q9NXB0 FAM177A1-207ENST00000554052 540 ntAPPRIS ALT2 TSL 2 BASIC15.76■□□□□ 0.11
MKS1Q9NXB0 FBF1-204ENST00000586631 621 ntAPPRIS ALT2 TSL 2 BASIC15.76■□□□□ 0.11
MKS1Q9NXB0 GIPC1-213ENST00000591349 1068 ntTSL 2 BASIC15.76■□□□□ 0.11
MKS1Q9NXB0 AL450472.2-201ENST00000603663 1156 ntBASIC15.76■□□□□ 0.11
MKS1Q9NXB0 PRKN-208ENST00000610470 531 ntTSL 2 BASIC15.76■□□□□ 0.11
MKS1Q9NXB0 PRKN-209ENST00000612485 225 ntTSL 5 BASIC15.76■□□□□ 0.11
MKS1Q9NXB0 SLC26A1-205ENST00000622731 1057 ntTSL 5 BASIC15.76■□□□□ 0.11
MKS1Q9NXB0 SGSH-203ENST00000570923 1546 ntTSL 2 BASIC15.76■□□□□ 0.11
MKS1Q9NXB0 CCDC28A-202ENST00000611852 1505 ntTSL 1 (best) BASIC15.76■□□□□ 0.11
MKS1Q9NXB0 CETN1-201ENST00000327228 1758 ntAPPRIS P1 BASIC15.76■□□□□ 0.11
MKS1Q9NXB0 BACE1-201ENST00000313005 6326 ntAPPRIS P1 TSL 1 (best) BASIC15.76■□□□□ 0.11
MKS1Q9NXB0 FECH-202ENST00000382873 2526 ntAPPRIS ALT2 TSL 2 BASIC15.76■□□□□ 0.11
MKS1Q9NXB0 PAK4-205ENST00000593690 3025 ntAPPRIS P1 TSL 1 (best) BASIC15.76■□□□□ 0.11
MKS1Q9NXB0 HMGXB3-202ENST00000503427 5275 ntAPPRIS ALT2 TSL 5 BASIC15.76■□□□□ 0.11
MKS1Q9NXB0 TAF6-201ENST00000344095 2727 ntAPPRIS P1 TSL 1 (best) BASIC15.76■□□□□ 0.11
MKS1Q9NXB0 AL669918.1-201ENST00000452392 2705 ntAPPRIS P1 TSL 2 BASIC15.76■□□□□ 0.11
MKS1Q9NXB0 AC026688.2-201ENST00000518984 1734 ntTSL 3 BASIC15.76■□□□□ 0.11
MKS1Q9NXB0 GABRB3-215ENST00000622697 5876 ntTSL 5 BASIC15.76■□□□□ 0.11
MKS1Q9NXB0 THOC5-203ENST00000397872 2676 ntAPPRIS P1 TSL 5 BASIC15.76■□□□□ 0.11
MKS1Q9NXB0 LMNA-201ENST00000347559 3137 ntTSL 5 BASIC15.76■□□□□ 0.11
MKS1Q9NXB0 SYTL3-205ENST00000611299 2896 ntAPPRIS ALT1 TSL 5 BASIC15.76■□□□□ 0.11
MKS1Q9NXB0 PTOV1-219ENST00000601638 1413 ntTSL 5 BASIC15.76■□□□□ 0.11
MKS1Q9NXB0 GTF3C5-204ENST00000372108 2110 ntAPPRIS ALT2 TSL 1 (best) BASIC15.76■□□□□ 0.11
MKS1Q9NXB0 POM121-203ENST00000434423 3750 ntAPPRIS ALT2 TSL 5 BASIC15.76■□□□□ 0.11
MKS1Q9NXB0 DIDO1-207ENST00000395343 8477 ntAPPRIS ALT2 TSL 1 (best) BASIC15.76■□□□□ 0.11
MKS1Q9NXB0 SPIRE1-201ENST00000309836 1877 ntTSL 2 BASIC15.76■□□□□ 0.11
MKS1Q9NXB0 PDE8B-202ENST00000333194 2572 ntAPPRIS ALT2 TSL 1 (best) BASIC15.76■□□□□ 0.11
MKS1Q9NXB0 LINC00552-201ENST00000625151 2579 ntBASIC15.76■□□□□ 0.11
MKS1Q9NXB0 GLIDR-202ENST00000625350 2588 ntTSL 1 (best) BASIC15.76■□□□□ 0.11
MKS1Q9NXB0 SMARCA4-201ENST00000344626 5392 ntTSL 1 (best) BASIC15.76■□□□□ 0.11
MKS1Q9NXB0 AMT-204ENST00000427987 1646 ntTSL 5 BASIC15.76■□□□□ 0.11
Retrieved 100 of 98,524 protein–RNA pairs in 30.3 ms