Protein–RNA interactions for Protein: Q96RL7

VPS13A, Vacuolar protein sorting-associated protein 13A, humanhuman

Predictions only

Length 3,174 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
VPS13AQ96RL7 ISCA1-201ENST00000311534 813 ntTSL 2 BASIC15.49■□□□□ 0.07
VPS13AQ96RL7 CTNNBIP1-201ENST00000377256 451 ntAPPRIS P1 TSL 5 BASIC15.49■□□□□ 0.07
VPS13AQ96RL7 IGLV4-69-201ENST00000390282 419 ntAPPRIS P1 BASIC15.49■□□□□ 0.07
VPS13AQ96RL7 AC012362.1-201ENST00000434906 739 ntBASIC15.49■□□□□ 0.07
VPS13AQ96RL7 AC010745.3-201ENST00000439745 415 ntTSL 3 BASIC15.49■□□□□ 0.07
VPS13AQ96RL7 AC100810.1-201ENST00000518822 978 ntTSL 2 BASIC15.49■□□□□ 0.07
VPS13AQ96RL7 TPO-215ENST00000539820 1157 ntTSL 1 (best) BASIC15.49■□□□□ 0.07
VPS13AQ96RL7 PAM16-215ENST00000577031 548 ntTSL 4 BASIC15.49■□□□□ 0.07
VPS13AQ96RL7 AC005523.1-201ENST00000598782 418 ntTSL 5 BASIC15.49■□□□□ 0.07
VPS13AQ96RL7 OLFM2-203ENST00000590841 1665 ntTSL 2 BASIC15.49■□□□□ 0.07
VPS13AQ96RL7 LLGL2-201ENST00000167462 3480 ntTSL 1 (best) BASIC15.49■□□□□ 0.07
VPS13AQ96RL7 SLC38A6-202ENST00000354886 1730 ntTSL 1 (best) BASIC15.49■□□□□ 0.07
VPS13AQ96RL7 CYHR1-204ENST00000438911 2020 ntAPPRIS P1 TSL 2 BASIC15.49■□□□□ 0.07
VPS13AQ96RL7 DDX42-202ENST00000389924 3939 ntAPPRIS P1 TSL 5 BASIC15.49■□□□□ 0.07
VPS13AQ96RL7 ZNF232-201ENST00000250076 2179 ntAPPRIS P3 TSL 5 BASIC15.49■□□□□ 0.07
VPS13AQ96RL7 SAP30L-203ENST00000440364 792 ntTSL 3 BASIC15.48■□□□□ 0.07
VPS13AQ96RL7 AL138731.1-201ENST00000452624 739 ntTSL 3 BASIC15.48■□□□□ 0.07
VPS13AQ96RL7 KRT18P43-201ENST00000469825 1281 ntBASIC15.48■□□□□ 0.07
VPS13AQ96RL7 AC011447.3-201ENST00000590606 722 ntTSL 3 BASIC15.48■□□□□ 0.07
VPS13AQ96RL7 AC011495.3-201ENST00000596472 427 ntTSL 2 BASIC15.48■□□□□ 0.07
VPS13AQ96RL7 SNAI2-201ENST00000020945 2010 ntAPPRIS P1 TSL 1 (best) BASIC15.48■□□□□ 0.07
VPS13AQ96RL7 CDC45-202ENST00000404724 1693 ntTSL 2 BASIC15.48■□□□□ 0.07
VPS13AQ96RL7 CSF1-204ENST00000369802 2484 ntAPPRIS P1 TSL 1 (best) BASIC15.48■□□□□ 0.07
VPS13AQ96RL7 TIPRL-202ENST00000367833 3032 ntAPPRIS P1 TSL 1 (best) BASIC15.48■□□□□ 0.07
VPS13AQ96RL7 ARHGAP22-201ENST00000249601 2751 ntAPPRIS P3 TSL 1 (best) BASIC15.48■□□□□ 0.07
VPS13AQ96RL7 GABARAPL1-205ENST00000539170 1700 ntTSL 3 BASIC15.48■□□□□ 0.07
VPS13AQ96RL7 RHOT1-201ENST00000333942 3133 ntAPPRIS ALT1 TSL 1 (best) BASIC15.48■□□□□ 0.07
VPS13AQ96RL7 AC148477.4-201ENST00000613430 1793 ntBASIC15.48■□□□□ 0.07
VPS13AQ96RL7 TCEA1-208ENST00000521604 2858 ntAPPRIS P1 TSL 1 (best) BASIC15.48■□□□□ 0.07
VPS13AQ96RL7 ACTR3-208ENST00000535589 1530 ntTSL 2 BASIC15.48■□□□□ 0.07
VPS13AQ96RL7 THOC5-203ENST00000397872 2676 ntAPPRIS P1 TSL 5 BASIC15.48■□□□□ 0.07
VPS13AQ96RL7 AC092364.2-201ENST00000596710 2692 ntBASIC15.48■□□□□ 0.07
VPS13AQ96RL7 CD1E-202ENST00000368155 696 ntTSL 1 (best) BASIC15.48■□□□□ 0.07
VPS13AQ96RL7 CD1E-204ENST00000368157 399 ntTSL 1 (best) BASIC15.48■□□□□ 0.07
VPS13AQ96RL7 RPSAP31-201ENST00000416648 895 ntBASIC15.48■□□□□ 0.07
VPS13AQ96RL7 CHID1-202ENST00000429789 1289 ntTSL 1 (best) BASIC15.48■□□□□ 0.07
VPS13AQ96RL7 ANAPC13-205ENST00000511751 896 ntAPPRIS P1 TSL 3 BASIC15.48■□□□□ 0.07
VPS13AQ96RL7 AC009720.1-201ENST00000511867 586 ntTSL 2 BASIC15.48■□□□□ 0.07
VPS13AQ96RL7 TMEM208-207ENST00000563953 887 ntTSL 2 BASIC15.48■□□□□ 0.07
VPS13AQ96RL7 AC015910.1-201ENST00000579400 975 ntBASIC15.48■□□□□ 0.07
VPS13AQ96RL7 BNIP3P1-202ENST00000550043 1585 ntBASIC15.48■□□□□ 0.07
VPS13AQ96RL7 U2AF2-201ENST00000308924 1698 ntAPPRIS P3 TSL 1 (best) BASIC15.48■□□□□ 0.07
VPS13AQ96RL7 AC107871.1-202ENST00000562767 3389 ntAPPRIS P1 TSL 3 BASIC15.48■□□□□ 0.07
VPS13AQ96RL7 FAM32A-201ENST00000263384 1455 ntAPPRIS P1 TSL 1 (best) BASIC15.48■□□□□ 0.07
VPS13AQ96RL7 BBS5-202ENST00000392663 3107 ntTSL 1 (best) BASIC15.48■□□□□ 0.07
VPS13AQ96RL7 LSR-212ENST00000602122 2480 ntAPPRIS ALT2 TSL 2 BASIC15.48■□□□□ 0.07
VPS13AQ96RL7 GSDMA-203ENST00000635792 1546 ntAPPRIS P1 TSL 5 BASIC15.48■□□□□ 0.07
VPS13AQ96RL7 UBE2QL1-201ENST00000399816 4317 ntAPPRIS P1 TSL 1 (best) BASIC15.48■□□□□ 0.07
VPS13AQ96RL7 FAM222B-211ENST00000582266 2613 ntTSL 1 (best) BASIC15.48■□□□□ 0.07
VPS13AQ96RL7 SEPT5-204ENST00000406395 1974 ntTSL 5 BASIC15.48■□□□□ 0.07
VPS13AQ96RL7 CCL25-201ENST00000253451 953 ntAPPRIS ALT2 TSL 2 BASIC15.48■□□□□ 0.07
VPS13AQ96RL7 RAB36-202ENST00000341989 936 ntTSL 1 (best) BASIC15.48■□□□□ 0.07
VPS13AQ96RL7 SETD7-203ENST00000406354 1127 ntTSL 1 (best) BASIC15.48■□□□□ 0.07
VPS13AQ96RL7 ALG1L2-201ENST00000425059 969 ntAPPRIS P1 TSL 5 BASIC15.48■□□□□ 0.07
VPS13AQ96RL7 AL136309.4-201ENST00000527831 640 ntTSL 1 (best) BASIC15.48■□□□□ 0.07
VPS13AQ96RL7 AC013355.1-201ENST00000562625 723 ntBASIC15.48■□□□□ 0.07
VPS13AQ96RL7 AIPL1-211ENST00000576776 1190 ntAPPRIS ALT2 TSL 1 (best) BASIC15.48■□□□□ 0.07
VPS13AQ96RL7 PRMT5-AS1-206ENST00000599580 847 ntTSL 5 BASIC15.48■□□□□ 0.07
VPS13AQ96RL7 RABEP2-202ENST00000358201 2821 ntAPPRIS P1 TSL 1 (best) BASIC15.48■□□□□ 0.07
VPS13AQ96RL7 VPS26A-202ENST00000373382 3229 ntAPPRIS P1 TSL 5 BASIC15.48■□□□□ 0.07
VPS13AQ96RL7 SPATS2L-202ENST00000360760 2119 ntTSL 1 (best) BASIC15.48■□□□□ 0.07
VPS13AQ96RL7 MRPS7-201ENST00000245539 1406 ntAPPRIS P1 TSL 1 (best) BASIC15.48■□□□□ 0.07
VPS13AQ96RL7 CCDC8-201ENST00000307522 3213 ntAPPRIS P1 BASIC15.47■□□□□ 0.07
VPS13AQ96RL7 CMA1-202ENST00000250378 937 ntAPPRIS P1 TSL 1 (best) BASIC15.47■□□□□ 0.07
VPS13AQ96RL7 AL354877.1-201ENST00000424412 413 ntBASIC15.47■□□□□ 0.07
VPS13AQ96RL7 ZNF124-204ENST00000491356 956 ntTSL 2 BASIC15.47■□□□□ 0.07
VPS13AQ96RL7 DNM1P30-201ENST00000563586 452 ntBASIC15.47■□□□□ 0.07
VPS13AQ96RL7 MEIS3-206ENST00000559524 1828 ntAPPRIS P3 TSL 2 BASIC15.47■□□□□ 0.07
VPS13AQ96RL7 TCTN1-202ENST00000397655 1879 ntTSL 1 (best) BASIC15.47■□□□□ 0.07
VPS13AQ96RL7 ACSM2B-211ENST00000567001 1988 ntAPPRIS P1 TSL 1 (best) BASIC15.47■□□□□ 0.07
VPS13AQ96RL7 CBFB-201ENST00000290858 3136 ntAPPRIS P3 TSL 1 (best) BASIC15.47■□□□□ 0.07
VPS13AQ96RL7 ATP6V0E2-212ENST00000611515 2565 ntTSL 1 (best) BASIC15.47■□□□□ 0.07
VPS13AQ96RL7 CHRDL1-205ENST00000482160 1537 ntTSL 2 BASIC15.47■□□□□ 0.07
VPS13AQ96RL7 TK1-201ENST00000301634 1628 ntAPPRIS P1 TSL 1 (best) BASIC15.47■□□□□ 0.07
VPS13AQ96RL7 KIAA1586-201ENST00000370733 2933 ntAPPRIS P1 TSL 1 (best) BASIC15.47■□□□□ 0.07
VPS13AQ96RL7 ZCWPW1-202ENST00000398027 2356 ntAPPRIS P3 TSL 1 (best) BASIC15.47■□□□□ 0.07
VPS13AQ96RL7 CYP2R1-207ENST00000532378 1746 ntTSL 5 BASIC15.47■□□□□ 0.07
VPS13AQ96RL7 LSM12-204ENST00000591247 2484 ntAPPRIS P1 TSL 1 (best) BASIC15.47■□□□□ 0.07
VPS13AQ96RL7 ZC3H12A-201ENST00000373087 2684 ntAPPRIS P1 TSL 1 (best) BASIC15.47■□□□□ 0.07
VPS13AQ96RL7 UCKL1-203ENST00000369908 1954 ntAPPRIS P1 TSL 2 BASIC15.47■□□□□ 0.07
VPS13AQ96RL7 GAD1-201ENST00000344257 1029 ntTSL 5 BASIC15.47■□□□□ 0.07
VPS13AQ96RL7 AL049698.1-202ENST00000441716 757 ntTSL 5 BASIC15.47■□□□□ 0.07
VPS13AQ96RL7 NCK2-206ENST00000522586 490 ntTSL 5 BASIC15.47■□□□□ 0.07
VPS13AQ96RL7 FAM104A-204ENST00000580032 451 ntTSL 3 BASIC15.47■□□□□ 0.07
VPS13AQ96RL7 AC011462.2-201ENST00000598887 344 ntTSL 5 BASIC15.47■□□□□ 0.07
VPS13AQ96RL7 FAM69C-202ENST00000400291 1329 ntTSL 1 (best) BASIC15.47■□□□□ 0.07
VPS13AQ96RL7 OBSL1-201ENST00000289656 2274 ntTSL 5 BASIC15.47■□□□□ 0.07
VPS13AQ96RL7 CES4A-203ENST00000535696 1472 ntTSL 2 BASIC15.47■□□□□ 0.07
VPS13AQ96RL7 PNLDC1-202ENST00000392167 1816 ntAPPRIS P1 TSL 2 BASIC15.47■□□□□ 0.07
VPS13AQ96RL7 KLC1-212ENST00000553286 3135 ntTSL 5 BASIC15.47■□□□□ 0.07
VPS13AQ96RL7 ECHDC1-214ENST00000474289 2443 ntAPPRIS P3 TSL 5 BASIC15.47■□□□□ 0.07
VPS13AQ96RL7 DPCD-202ENST00000370151 858 ntAPPRIS P1 TSL 1 (best) BASIC15.46■□□□□ 0.07
VPS13AQ96RL7 AC136604.1-201ENST00000418535 575 ntBASIC15.46■□□□□ 0.07
VPS13AQ96RL7 PPOX-204ENST00000462866 473 ntTSL 5 BASIC15.46■□□□□ 0.07
VPS13AQ96RL7 AL031282.1-201ENST00000577672 409 ntTSL 3 BASIC15.46■□□□□ 0.07
VPS13AQ96RL7 LRWD1-209ENST00000626402 138 ntTSL 3 BASIC15.46■□□□□ 0.07
VPS13AQ96RL7 BNIP1-201ENST00000231668 1339 ntTSL 1 (best) BASIC15.46■□□□□ 0.07
VPS13AQ96RL7 BEX4-202ENST00000372695 1328 ntAPPRIS P1 TSL 1 (best) BASIC15.46■□□□□ 0.07
VPS13AQ96RL7 CCDC51-202ENST00000412398 1385 ntTSL 2 BASIC15.46■□□□□ 0.07
VPS13AQ96RL7 GALNT9-201ENST00000328957 2410 ntAPPRIS P1 TSL 1 (best) BASIC15.46■□□□□ 0.07
Retrieved 100 of 98,524 protein–RNA pairs in 61.3 ms