Protein–RNA interactions for Protein: Q8NHS4

CLHC1, Clathrin heavy chain linker domain-containing protein 1, humanhuman

Predictions only

Length 586 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
CLHC1Q8NHS4 AHSA1-202ENST00000535854 1173 ntTSL 2 BASIC15.41■□□□□ 0.06
CLHC1Q8NHS4 AC025162.1-201ENST00000554022 565 ntTSL 4 BASIC15.41■□□□□ 0.06
CLHC1Q8NHS4 BEAN1-203ENST00000561796 1078 ntAPPRIS P2 TSL 1 (best) BASIC15.41■□□□□ 0.06
CLHC1Q8NHS4 AC133550.1-201ENST00000563565 295 ntTSL 3 BASIC15.41■□□□□ 0.06
CLHC1Q8NHS4 AC005606.1-201ENST00000567515 504 ntTSL 5 BASIC15.41■□□□□ 0.06
CLHC1Q8NHS4 SPATA33-208ENST00000568929 1264 ntAPPRIS ALT2 TSL 2 BASIC15.41■□□□□ 0.06
CLHC1Q8NHS4 AC084125.4-201ENST00000580385 338 ntTSL 3 BASIC15.41■□□□□ 0.06
CLHC1Q8NHS4 AC011530.1-201ENST00000593999 558 ntTSL 2 BASIC15.41■□□□□ 0.06
CLHC1Q8NHS4 OR5AH1P-202ENST00000597822 431 ntTSL 3 BASIC15.41■□□□□ 0.06
CLHC1Q8NHS4 AC120114.3-201ENST00000611923 658 ntBASIC15.41■□□□□ 0.06
CLHC1Q8NHS4 GSN-206ENST00000394353 2311 ntTSL 2 BASIC15.41■□□□□ 0.06
CLHC1Q8NHS4 SUSD4-204ENST00000366878 3025 ntAPPRIS P1 TSL 1 (best) BASIC15.41■□□□□ 0.06
CLHC1Q8NHS4 FAM53B-202ENST00000337318 5431 ntAPPRIS P1 TSL 1 (best) BASIC15.41■□□□□ 0.06
CLHC1Q8NHS4 PER1-201ENST00000317276 4707 ntAPPRIS P1 TSL 1 (best) BASIC15.41■□□□□ 0.06
CLHC1Q8NHS4 CDCP2-201ENST00000371330 2723 ntAPPRIS P2 TSL 2 BASIC15.41■□□□□ 0.06
CLHC1Q8NHS4 KIF18B-204ENST00000593135 2745 ntAPPRIS P3 TSL 5 BASIC15.41■□□□□ 0.06
CLHC1Q8NHS4 JAKMIP1-204ENST00000409831 2371 ntAPPRIS P1 TSL 2 BASIC15.41■□□□□ 0.06
CLHC1Q8NHS4 TOPAZ1-201ENST00000309765 5334 ntAPPRIS P1 TSL 5 BASIC15.41■□□□□ 0.06
CLHC1Q8NHS4 SLC6A11-201ENST00000254488 4296 ntAPPRIS P1 TSL 1 (best) BASIC15.4■□□□□ 0.06
CLHC1Q8NHS4 ZFP1-209ENST00000570010 1457 ntAPPRIS P1 TSL 2 BASIC15.4■□□□□ 0.06
CLHC1Q8NHS4 ZNF804B-201ENST00000333190 4659 ntAPPRIS P1 TSL 1 (best) BASIC15.4■□□□□ 0.06
CLHC1Q8NHS4 TONSL-203ENST00000613741 1713 ntTSL 5 BASIC15.4■□□□□ 0.06
CLHC1Q8NHS4 AC022532.1-201ENST00000624563 1728 ntBASIC15.4■□□□□ 0.06
CLHC1Q8NHS4 ECE1-204ENST00000415912 5099 ntAPPRIS ALT1 TSL 1 (best) BASIC15.4■□□□□ 0.06
CLHC1Q8NHS4 MAPKAPK3-203ENST00000446044 2988 ntAPPRIS P1 TSL 1 (best) BASIC15.4■□□□□ 0.06
CLHC1Q8NHS4 SNRPF-201ENST00000266735 1389 ntAPPRIS P1 TSL 1 (best) BASIC15.4■□□□□ 0.06
CLHC1Q8NHS4 MAGEF1-201ENST00000317897 1636 ntAPPRIS P1 BASIC15.4■□□□□ 0.06
CLHC1Q8NHS4 NFE2L2-201ENST00000397062 2853 ntTSL 1 (best) BASIC15.4■□□□□ 0.06
CLHC1Q8NHS4 TMEM139-205ENST00000410004 2114 ntAPPRIS P1 TSL 2 BASIC15.4■□□□□ 0.06
CLHC1Q8NHS4 RPS19-206ENST00000598742 2359 ntAPPRIS P1 TSL 1 (best) BASIC15.4■□□□□ 0.06
CLHC1Q8NHS4 NEFL-203ENST00000619417 1879 ntTSL 5 BASIC15.4■□□□□ 0.06
CLHC1Q8NHS4 SRD5A2-201ENST00000622030 4648 ntAPPRIS P1 TSL 1 (best) BASIC15.4■□□□□ 0.06
CLHC1Q8NHS4 AL136379.1-201ENST00000623471 2642 ntBASIC15.4■□□□□ 0.06
CLHC1Q8NHS4 AC009802.1-201ENST00000637973 1609 ntTSL 5 BASIC15.4■□□□□ 0.06
CLHC1Q8NHS4 ZNF84-202ENST00000392319 7020 ntAPPRIS P2 TSL 1 (best) BASIC15.4■□□□□ 0.06
CLHC1Q8NHS4 ZNF620-202ENST00000418905 2022 ntTSL 2 BASIC15.4■□□□□ 0.06
CLHC1Q8NHS4 RNPS1-223ENST00000568631 1792 ntAPPRIS P1 TSL 5 BASIC15.4■□□□□ 0.06
CLHC1Q8NHS4 CCDC28A-202ENST00000611852 1505 ntTSL 1 (best) BASIC15.4■□□□□ 0.06
CLHC1Q8NHS4 ATP23-201ENST00000300145 1245 ntAPPRIS P1 TSL 1 (best) BASIC15.4■□□□□ 0.06
CLHC1Q8NHS4 GSTO1-202ENST00000369713 972 ntAPPRIS P1 TSL 1 (best) BASIC15.4■□□□□ 0.06
CLHC1Q8NHS4 AC002056.1-201ENST00000395613 760 ntBASIC15.4■□□□□ 0.06
CLHC1Q8NHS4 SATB1-AS1-201ENST00000414198 737 ntTSL 2 BASIC15.4■□□□□ 0.06
CLHC1Q8NHS4 MED15P5-201ENST00000423150 992 ntBASIC15.4■□□□□ 0.06
CLHC1Q8NHS4 AL451069.2-201ENST00000428814 297 ntTSL 3 BASIC15.4■□□□□ 0.06
CLHC1Q8NHS4 AC007834.1-201ENST00000446473 728 ntTSL 3 BASIC15.4■□□□□ 0.06
CLHC1Q8NHS4 AC245100.5-201ENST00000452108 331 ntBASIC15.4■□□□□ 0.06
CLHC1Q8NHS4 MDH2-205ENST00000461263 648 ntTSL 2 BASIC15.4■□□□□ 0.06
CLHC1Q8NHS4 OTUB2-202ENST00000553723 708 ntTSL 1 (best) BASIC15.4■□□□□ 0.06
CLHC1Q8NHS4 AL359317.2-203ENST00000557409 538 ntTSL 4 BASIC15.4■□□□□ 0.06
CLHC1Q8NHS4 CDC42EP4-206ENST00000581014 737 ntTSL 5 BASIC15.4■□□□□ 0.06
CLHC1Q8NHS4 AC008878.4-201ENST00000602083 293 ntTSL 5 BASIC15.4■□□□□ 0.06
CLHC1Q8NHS4 AC140113.2-201ENST00000604370 208 ntBASIC15.4■□□□□ 0.06
CLHC1Q8NHS4 AL590999.1-203ENST00000606829 542 ntTSL 4 BASIC15.4■□□□□ 0.06
CLHC1Q8NHS4 UBE3D-208ENST00000626828 114 ntTSL 5 BASIC15.4■□□□□ 0.06
CLHC1Q8NHS4 SLC34A1-204ENST00000512593 1912 ntTSL 2 BASIC15.4■□□□□ 0.06
CLHC1Q8NHS4 SCAP-215ENST00000545718 2950 ntTSL 5 BASIC15.4■□□□□ 0.06
CLHC1Q8NHS4 INPPL1-207ENST00000538751 4656 ntTSL 1 (best) BASIC15.4■□□□□ 0.06
CLHC1Q8NHS4 SLC44A2-203ENST00000586078 3784 ntTSL 5 BASIC15.4■□□□□ 0.06
CLHC1Q8NHS4 LAPTM5-201ENST00000294507 2223 ntAPPRIS P1 TSL 1 (best) BASIC15.4■□□□□ 0.06
CLHC1Q8NHS4 TEKT4P2-201ENST00000416067 1599 ntTSL 1 (best) BASIC15.4■□□□□ 0.06
CLHC1Q8NHS4 GRID2IP-202ENST00000452113 3428 ntTSL 5 BASIC15.4■□□□□ 0.06
CLHC1Q8NHS4 CAPN2-201ENST00000295006 3573 ntAPPRIS P1 TSL 1 (best) BASIC15.4■□□□□ 0.06
CLHC1Q8NHS4 BSG-215ENST00000618006 1329 ntTSL 2 BASIC15.4■□□□□ 0.06
CLHC1Q8NHS4 BRD2-202ENST00000374831 4807 ntAPPRIS P3 TSL 1 (best) BASIC15.4■□□□□ 0.06
CLHC1Q8NHS4 AL161772.1-201ENST00000610494 4412 ntBASIC15.4■□□□□ 0.06
CLHC1Q8NHS4 MARVELD1-201ENST00000285605 3221 ntAPPRIS P1 TSL 2 BASIC15.39■□□□□ 0.06
CLHC1Q8NHS4 INTS4P1-202ENST00000587624 2985 ntTSL 5 BASIC15.39■□□□□ 0.05
CLHC1Q8NHS4 AP000704.1-201ENST00000637940 2182 ntTSL 5 BASIC15.39■□□□□ 0.05
CLHC1Q8NHS4 RHPN1-201ENST00000289013 3683 ntAPPRIS P1 TSL 1 (best) BASIC15.39■□□□□ 0.05
CLHC1Q8NHS4 UNC5C-202ENST00000504962 1789 ntTSL 2 BASIC15.39■□□□□ 0.05
CLHC1Q8NHS4 ZNF259P1-201ENST00000407656 1365 ntBASIC15.39■□□□□ 0.05
CLHC1Q8NHS4 SLC25A33-201ENST00000302692 3854 ntAPPRIS P1 TSL 1 (best) BASIC15.39■□□□□ 0.05
CLHC1Q8NHS4 RUFY2-204ENST00000399200 2685 ntTSL 1 (best) BASIC15.39■□□□□ 0.05
CLHC1Q8NHS4 ILF3-210ENST00000588657 2697 ntAPPRIS ALT2 TSL 5 BASIC15.39■□□□□ 0.05
CLHC1Q8NHS4 ST14-201ENST00000278742 3539 ntAPPRIS P1 TSL 1 (best) BASIC15.39■□□□□ 0.05
CLHC1Q8NHS4 PLEKHG3-202ENST00000394691 4397 ntTSL 5 BASIC15.39■□□□□ 0.05
CLHC1Q8NHS4 NUPR2-201ENST00000329309 603 ntAPPRIS P1 TSL 1 (best) BASIC15.39■□□□□ 0.05
CLHC1Q8NHS4 ELK1-202ENST00000343894 736 ntAPPRIS ALT2 TSL 1 (best) BASIC15.39■□□□□ 0.05
CLHC1Q8NHS4 CELA2A-201ENST00000359621 919 ntAPPRIS P1 TSL 1 (best) BASIC15.39■□□□□ 0.05
CLHC1Q8NHS4 HIST1H2BL-201ENST00000377401 488 ntAPPRIS P1 BASIC15.39■□□□□ 0.05
CLHC1Q8NHS4 SH3TC1-202ENST00000382521 829 ntTSL 1 (best) BASIC15.39■□□□□ 0.05
CLHC1Q8NHS4 CXCL1-201ENST00000395761 1097 ntAPPRIS P1 TSL 1 (best) BASIC15.39■□□□□ 0.05
CLHC1Q8NHS4 GPX1P2-201ENST00000429271 606 ntBASIC15.39■□□□□ 0.05
CLHC1Q8NHS4 PKD2-202ENST00000502363 1222 ntTSL 5 BASIC15.39■□□□□ 0.05
CLHC1Q8NHS4 AC034213.1-201ENST00000507681 806 ntTSL 3 BASIC15.39■□□□□ 0.05
CLHC1Q8NHS4 RNA5SP416-201ENST00000516838 111 ntBASIC15.39■□□□□ 0.05
CLHC1Q8NHS4 AC008403.2-204ENST00000600650 1006 ntTSL 3 BASIC15.39■□□□□ 0.05
CLHC1Q8NHS4 SAP130-201ENST00000259234 4140 ntAPPRIS P1 TSL 5 BASIC15.39■□□□□ 0.05
CLHC1Q8NHS4 NTNG1-203ENST00000370066 1443 ntTSL 1 (best) BASIC15.39■□□□□ 0.05
CLHC1Q8NHS4 SLC25A45-214ENST00000534028 2432 ntTSL 1 (best) BASIC15.39■□□□□ 0.05
CLHC1Q8NHS4 UVSSA-206ENST00000507531 2597 ntAPPRIS P2 TSL 1 (best) BASIC15.39■□□□□ 0.05
CLHC1Q8NHS4 ING1-203ENST00000375774 2870 ntTSL 1 (best) BASIC15.39■□□□□ 0.05
CLHC1Q8NHS4 NRSN2-210ENST00000621012 1852 ntAPPRIS P1 TSL 1 (best) BASIC15.39■□□□□ 0.05
CLHC1Q8NHS4 RAP1GAP2-209ENST00000637138 3175 ntTSL 5 BASIC15.39■□□□□ 0.05
CLHC1Q8NHS4 TUB-AS1-201ENST00000506601 2021 ntTSL 2 BASIC15.39■□□□□ 0.05
CLHC1Q8NHS4 GPSM1-205ENST00000440944 3633 ntAPPRIS P2 TSL 5 BASIC15.39■□□□□ 0.05
CLHC1Q8NHS4 AC018892.3-201ENST00000623986 2499 ntBASIC15.39■□□□□ 0.05
CLHC1Q8NHS4 BICDL1-201ENST00000397558 3055 ntAPPRIS P1 TSL 5 BASIC15.39■□□□□ 0.05
CLHC1Q8NHS4 EOMES-201ENST00000295743 3386 ntAPPRIS P1 TSL 1 (best) BASIC15.39■□□□□ 0.05
CLHC1Q8NHS4 TRIM71-201ENST00000383763 8685 ntAPPRIS P1 TSL 1 (best) BASIC15.39■□□□□ 0.05
Retrieved 100 of 98,524 protein–RNA pairs in 40 ms