Protein–RNA interactions for Protein: Q8IWA6

CCDC60, Coiled-coil domain-containing protein 60, humanhuman

Predicted RBP Predictions only

Length 550 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
CCDC60Q8IWA6 GPAT2-201ENST00000359548 2761 ntAPPRIS P1 TSL 1 (best) BASIC17.68■□□□□ 0.42
CCDC60Q8IWA6 DCP1B-201ENST00000280665 2086 ntAPPRIS P1 TSL 1 (best) BASIC17.68■□□□□ 0.42
CCDC60Q8IWA6 DUSP4-201ENST00000240100 5537 ntAPPRIS P1 TSL 1 (best) BASIC17.68■□□□□ 0.42
CCDC60Q8IWA6 NOL4L-211ENST00000621426 6577 ntAPPRIS P2 TSL 5 BASIC17.68■□□□□ 0.42
CCDC60Q8IWA6 GSTO2-203ENST00000450629 1391 ntTSL 5 BASIC17.68■□□□□ 0.42
CCDC60Q8IWA6 ZMYM3-202ENST00000373978 1511 ntTSL 5 BASIC17.68■□□□□ 0.42
CCDC60Q8IWA6 ZNF789-201ENST00000331410 1654 ntAPPRIS P1 TSL 1 (best) BASIC17.68■□□□□ 0.42
CCDC60Q8IWA6 TK2-207ENST00000544898 3441 ntAPPRIS P3 TSL 1 (best) BASIC17.68■□□□□ 0.42
CCDC60Q8IWA6 LINC02447-202ENST00000501888 2146 ntBASIC17.68■□□□□ 0.42
CCDC60Q8IWA6 AKTIP-202ENST00000394657 2426 ntAPPRIS P3 TSL 2 BASIC17.68■□□□□ 0.42
CCDC60Q8IWA6 THOC7-201ENST00000295899 990 ntAPPRIS P1 TSL 1 (best) BASIC17.68■□□□□ 0.42
CCDC60Q8IWA6 SCAND1-201ENST00000305978 902 ntAPPRIS P1 TSL 1 (best) BASIC17.68■□□□□ 0.42
CCDC60Q8IWA6 FOXR1-201ENST00000317011 1159 ntAPPRIS P1 TSL 1 (best) BASIC17.68■□□□□ 0.42
CCDC60Q8IWA6 VHLL-201ENST00000339922 676 ntAPPRIS P1 BASIC17.68■□□□□ 0.42
CCDC60Q8IWA6 NDUFS2-201ENST00000367993 2042 ntAPPRIS P3 TSL 1 (best) BASIC17.68■□□□□ 0.42
CCDC60Q8IWA6 DGAT2-202ENST00000376262 2324 ntTSL 1 (best) BASIC17.68■□□□□ 0.42
CCDC60Q8IWA6 APH1A-204ENST00000414276 1718 ntTSL 2 BASIC17.68■□□□□ 0.42
CCDC60Q8IWA6 AP006294.1-201ENST00000415407 339 ntBASIC17.68■□□□□ 0.42
CCDC60Q8IWA6 AL109811.2-201ENST00000447600 487 ntTSL 3 BASIC17.68■□□□□ 0.42
CCDC60Q8IWA6 CLNS1A-210ENST00000528364 953 ntAPPRIS P1 TSL 3 BASIC17.68■□□□□ 0.42
CCDC60Q8IWA6 CALU-205ENST00000535011 3210 ntTSL 1 (best) BASIC17.68■□□□□ 0.42
CCDC60Q8IWA6 POLE2-203ENST00000553805 496 ntTSL 2 BASIC17.68■□□□□ 0.42
CCDC60Q8IWA6 LITAF-218ENST00000576036 603 ntAPPRIS P1 TSL 4 BASIC17.68■□□□□ 0.42
CCDC60Q8IWA6 AC129926.1-201ENST00000581944 614 ntTSL 2 BASIC17.68■□□□□ 0.42
CCDC60Q8IWA6 LCN8-205ENST00000612714 638 ntAPPRIS ALT2 TSL 1 (best) BASIC17.68■□□□□ 0.42
CCDC60Q8IWA6 HIST1H2BO-201ENST00000616182 381 ntAPPRIS P1 BASIC17.68■□□□□ 0.42
CCDC60Q8IWA6 ATP6AP2-226ENST00000637526 1862 ntAPPRIS ALT2 TSL 5 BASIC17.68■□□□□ 0.42
CCDC60Q8IWA6 B4GALNT4-201ENST00000329962 3444 ntAPPRIS P1 TSL 1 (best) BASIC17.68■□□□□ 0.42
CCDC60Q8IWA6 CTD-2194D22.4-201ENST00000514569 1635 ntTSL 1 (best) BASIC17.68■□□□□ 0.42
CCDC60Q8IWA6 MCF2L-203ENST00000375604 6445 ntAPPRIS P3 TSL 2 BASIC17.68■□□□□ 0.42
CCDC60Q8IWA6 ABHD11-201ENST00000222800 1483 ntAPPRIS P3 TSL 1 (best) BASIC17.68■□□□□ 0.42
CCDC60Q8IWA6 CD300LG-206ENST00000588884 1459 ntAPPRIS ALT2 TSL 2 BASIC17.68■□□□□ 0.42
CCDC60Q8IWA6 GPR158-AS1-201ENST00000449643 2433 ntTSL 2 BASIC17.68■□□□□ 0.42
CCDC60Q8IWA6 ABHD18-203ENST00000444616 2129 ntAPPRIS P1 TSL 5 BASIC17.68■□□□□ 0.42
CCDC60Q8IWA6 BANK1-207ENST00000508653 2115 ntTSL 1 (best) BASIC17.68■□□□□ 0.42
CCDC60Q8IWA6 CARD14-202ENST00000570421 2607 ntTSL 1 (best) BASIC17.68■□□□□ 0.42
CCDC60Q8IWA6 SLC8B1-210ENST00000550047 2493 ntTSL 2 BASIC17.67■□□□□ 0.42
CCDC60Q8IWA6 C21orf58-201ENST00000291691 2975 ntAPPRIS P3 TSL 2 BASIC17.67■□□□□ 0.42
CCDC60Q8IWA6 CTSO-201ENST00000433477 2954 ntAPPRIS P1 TSL 1 (best) BASIC17.67■□□□□ 0.42
CCDC60Q8IWA6 MPP3-201ENST00000398389 2182 ntAPPRIS P1 TSL 1 (best) BASIC17.67■□□□□ 0.42
CCDC60Q8IWA6 DZANK1-202ENST00000329494 1389 ntTSL 1 (best) BASIC17.67■□□□□ 0.42
CCDC60Q8IWA6 KRT76-201ENST00000332411 2529 ntAPPRIS P1 TSL 1 (best) BASIC17.67■□□□□ 0.42
CCDC60Q8IWA6 PCGF3-201ENST00000362003 5685 ntAPPRIS P1 TSL 5 BASIC17.67■□□□□ 0.42
CCDC60Q8IWA6 SMCHD1-201ENST00000320876 8821 ntAPPRIS P1 TSL 5 BASIC17.67■□□□□ 0.42
CCDC60Q8IWA6 MAP4K3-201ENST00000263881 4362 ntAPPRIS P1 TSL 1 (best) BASIC17.67■□□□□ 0.42
CCDC60Q8IWA6 RBM33-205ENST00000392759 1580 ntTSL 5 BASIC17.67■□□□□ 0.42
CCDC60Q8IWA6 HCLS1-202ENST00000428394 1560 ntTSL 2 BASIC17.67■□□□□ 0.42
CCDC60Q8IWA6 TJP2-202ENST00000377245 4611 ntAPPRIS P4 TSL 1 (best) BASIC17.67■□□□□ 0.42
CCDC60Q8IWA6 PRKCZ-202ENST00000400921 2294 ntTSL 1 (best) BASIC17.67■□□□□ 0.42
CCDC60Q8IWA6 BANF1-201ENST00000312175 1155 ntAPPRIS P1 TSL 1 (best) BASIC17.67■□□□□ 0.42
CCDC60Q8IWA6 LCE3A-201ENST00000335674 270 ntAPPRIS P1 BASIC17.67■□□□□ 0.42
CCDC60Q8IWA6 GEM-202ENST00000396194 2103 ntAPPRIS P1 TSL 1 (best) BASIC17.67■□□□□ 0.42
CCDC60Q8IWA6 HSPB7-204ENST00000411503 2128 ntAPPRIS ALT1 TSL 1 (best) BASIC17.67■□□□□ 0.42
CCDC60Q8IWA6 TOMM22P5-201ENST00000416399 439 ntBASIC17.67■□□□□ 0.42
CCDC60Q8IWA6 ARL6IP4-207ENST00000426960 910 ntAPPRIS ALT2 TSL 3 BASIC17.67■□□□□ 0.42
CCDC60Q8IWA6 TMEM247-204ENST00000434431 680 ntAPPRIS P1 TSL 5 BASIC17.67■□□□□ 0.42
CCDC60Q8IWA6 ZFAND2B-212ENST00000444522 1199 ntAPPRIS P1 TSL 5 BASIC17.67■□□□□ 0.42
CCDC60Q8IWA6 INE1-201ENST00000456273 945 ntBASIC17.67■□□□□ 0.42
CCDC60Q8IWA6 RAB26-202ENST00000541451 944 ntTSL 1 (best) BASIC17.67■□□□□ 0.42
CCDC60Q8IWA6 TRAPPC6A-204ENST00000588062 695 ntTSL 2 BASIC17.67■□□□□ 0.42
CCDC60Q8IWA6 NDUFS7-218ENST00000618074 688 ntTSL 5 BASIC17.67■□□□□ 0.42
CCDC60Q8IWA6 NDUFS7-219ENST00000620479 754 ntTSL 5 BASIC17.67■□□□□ 0.42
CCDC60Q8IWA6 IGHV3-72-202ENST00000621503 303 ntBASIC17.67■□□□□ 0.42
CCDC60Q8IWA6 OR2T27-203ENST00000641652 1285 ntAPPRIS P1 BASIC17.67■□□□□ 0.42
CCDC60Q8IWA6 CELF6-201ENST00000287202 3345 ntAPPRIS P3 TSL 1 (best) BASIC17.67■□□□□ 0.42
CCDC60Q8IWA6 MAPKAPK5-207ENST00000551404 1630 ntAPPRIS P4 TSL 5 BASIC17.67■□□□□ 0.42
CCDC60Q8IWA6 AC009802.1-201ENST00000637973 1609 ntTSL 5 BASIC17.67■□□□□ 0.42
CCDC60Q8IWA6 VEZF1-202ENST00000581208 2321 ntAPPRIS P3 TSL 1 (best) BASIC17.67■□□□□ 0.42
CCDC60Q8IWA6 PCSK4-201ENST00000300954 2661 ntAPPRIS P1 TSL 1 (best) BASIC17.67■□□□□ 0.42
CCDC60Q8IWA6 ITSN2-201ENST00000355123 6300 ntAPPRIS P4 TSL 1 (best) BASIC17.67■□□□□ 0.42
CCDC60Q8IWA6 TMC3-AS1-203ENST00000559781 2195 ntTSL 3 BASIC17.67■□□□□ 0.42
CCDC60Q8IWA6 RFC5-204ENST00000454402 1655 ntAPPRIS P1 TSL 1 (best) BASIC17.67■□□□□ 0.42
CCDC60Q8IWA6 CXXC1-201ENST00000285106 2936 ntAPPRIS P3 TSL 1 (best) BASIC17.67■□□□□ 0.42
CCDC60Q8IWA6 C16orf89-201ENST00000315997 1872 ntAPPRIS P3 TSL 1 (best) BASIC17.67■□□□□ 0.42
CCDC60Q8IWA6 SLC4A5-203ENST00000377632 3123 ntTSL 1 (best) BASIC17.67■□□□□ 0.42
CCDC60Q8IWA6 DNAJA3-201ENST00000262375 2763 ntAPPRIS P3 TSL 1 (best) BASIC17.67■□□□□ 0.42
CCDC60Q8IWA6 ST6GALNAC6-202ENST00000373141 2424 ntAPPRIS ALT1 TSL 2 BASIC17.67■□□□□ 0.42
CCDC60Q8IWA6 TTC29-202ENST00000398886 1729 ntAPPRIS ALT2 TSL 5 BASIC17.67■□□□□ 0.42
CCDC60Q8IWA6 CYP2R1-207ENST00000532378 1746 ntTSL 5 BASIC17.67■□□□□ 0.42
CCDC60Q8IWA6 EI24-214ENST00000620753 1718 ntAPPRIS P1 TSL 5 BASIC17.67■□□□□ 0.42
CCDC60Q8IWA6 AP003397.1-201ENST00000525706 1387 ntTSL 1 (best) BASIC17.66■□□□□ 0.42
CCDC60Q8IWA6 ZNF398-203ENST00000483892 2121 ntTSL 5 BASIC17.66■□□□□ 0.42
CCDC60Q8IWA6 SYNGAP1-202ENST00000418600 5828 ntTSL 5 BASIC17.66■□□□□ 0.42
CCDC60Q8IWA6 DDX55-203ENST00000421670 1574 ntTSL 1 (best) BASIC17.66■□□□□ 0.42
CCDC60Q8IWA6 MTHFD1L-211ENST00000611279 3475 ntAPPRIS ALT1 TSL 5 BASIC17.66■□□□□ 0.42
CCDC60Q8IWA6 ABCB10-201ENST00000344517 3857 ntAPPRIS P1 TSL 1 (best) BASIC17.66■□□□□ 0.42
CCDC60Q8IWA6 MYB-205ENST00000367814 3302 ntAPPRIS P3 TSL 1 (best) BASIC17.66■□□□□ 0.42
CCDC60Q8IWA6 MON1B-203ENST00000545553 1814 ntTSL 2 BASIC17.66■□□□□ 0.42
CCDC60Q8IWA6 PARP12-201ENST00000263549 3796 ntAPPRIS P1 TSL 1 (best) BASIC17.66■□□□□ 0.42
CCDC60Q8IWA6 SYBU-231ENST00000533065 2645 ntAPPRIS ALT2 TSL 2 BASIC17.66■□□□□ 0.42
CCDC60Q8IWA6 MAGI1-213ENST00000483466 4791 ntAPPRIS P3 TSL 1 (best) BASIC17.66■□□□□ 0.42
CCDC60Q8IWA6 SPATC1L-202ENST00000330205 1182 ntTSL 1 (best) BASIC17.66■□□□□ 0.42
CCDC60Q8IWA6 RN7SL399P-201ENST00000471648 279 ntBASIC17.66■□□□□ 0.42
CCDC60Q8IWA6 AC095060.1-201ENST00000502455 549 ntTSL 4 BASIC17.66■□□□□ 0.42
CCDC60Q8IWA6 AC009088.3-201ENST00000563605 357 ntTSL 3 BASIC17.66■□□□□ 0.42
CCDC60Q8IWA6 AC005544.2-201ENST00000579138 229 ntTSL 5 BASIC17.66■□□□□ 0.42
CCDC60Q8IWA6 AC010327.1-201ENST00000587871 975 ntAPPRIS P1 TSL 5 BASIC17.66■□□□□ 0.42
CCDC60Q8IWA6 NOP53-AS1-201ENST00000602048 540 ntTSL 4 BASIC17.66■□□□□ 0.42
CCDC60Q8IWA6 RAPSN-202ENST00000352508 1452 ntTSL 1 (best) BASIC17.66■□□□□ 0.42
CCDC60Q8IWA6 SHISA5-208ENST00000442747 2250 ntTSL 2 BASIC17.66■□□□□ 0.42
Retrieved 100 of 98,524 protein–RNA pairs in 40.7 ms