Protein–RNA interactions for Protein: Q7Z3B4

NUP54, Nucleoporin p54, humanhuman

Predictions only

Length 507 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
NUP54Q7Z3B4 KLC1-207ENST00000445352 2416 ntTSL 5 BASIC14.83□□□□□ -0.04
NUP54Q7Z3B4 GIT2-220ENST00000553118 2424 ntTSL 5 BASIC14.83□□□□□ -0.04
NUP54Q7Z3B4 KCTD11-201ENST00000333751 2783 ntAPPRIS P1 BASIC14.83□□□□□ -0.04
NUP54Q7Z3B4 PCDH8P1-201ENST00000428983 2773 ntBASIC14.83□□□□□ -0.04
NUP54Q7Z3B4 PPL-205ENST00000590782 5845 ntAPPRIS ALT1 TSL 5 BASIC14.83□□□□□ -0.04
NUP54Q7Z3B4 UCKL1-201ENST00000354216 1837 ntTSL 1 (best) BASIC14.82□□□□□ -0.04
NUP54Q7Z3B4 OGFOD2-224ENST00000545612 1465 ntTSL 2 BASIC14.82□□□□□ -0.04
NUP54Q7Z3B4 TXNRD2-214ENST00000491939 2238 ntTSL 1 (best) BASIC14.82□□□□□ -0.04
NUP54Q7Z3B4 SAE1-202ENST00000392776 1851 ntTSL 3 BASIC14.82□□□□□ -0.04
NUP54Q7Z3B4 SIGLEC6-205ENST00000425629 1852 ntAPPRIS P4 TSL 2 BASIC14.82□□□□□ -0.04
NUP54Q7Z3B4 GPS1-208ENST00000578552 1874 ntAPPRIS ALT1 TSL 1 (best) BASIC14.82□□□□□ -0.04
NUP54Q7Z3B4 MAP3K4-202ENST00000366919 5397 ntAPPRIS ALT2 TSL 1 (best) BASIC14.82□□□□□ -0.04
NUP54Q7Z3B4 HPCAL1-207ENST00000620771 1941 ntAPPRIS P1 TSL 2 BASIC14.82□□□□□ -0.04
NUP54Q7Z3B4 TIMM44-201ENST00000270538 2075 ntAPPRIS P1 TSL 1 (best) BASIC14.82□□□□□ -0.04
NUP54Q7Z3B4 DNAJC21-202ENST00000382021 6208 ntTSL 2 BASIC14.82□□□□□ -0.04
NUP54Q7Z3B4 ADRA1A-204ENST00000380573 2548 ntAPPRIS P1 TSL 2 BASIC14.82□□□□□ -0.04
NUP54Q7Z3B4 TMEM219-201ENST00000279396 999 ntAPPRIS P1 TSL 1 (best) BASIC14.82□□□□□ -0.04
NUP54Q7Z3B4 LINC00313-201ENST00000332440 579 ntTSL 1 (best) BASIC14.82□□□□□ -0.04
NUP54Q7Z3B4 ATG2A-201ENST00000377264 6357 ntAPPRIS P1 TSL 1 (best) BASIC14.82□□□□□ -0.04
NUP54Q7Z3B4 ASMT-201ENST00000381229 1087 ntAPPRIS P1 TSL 1 (best) BASIC14.82□□□□□ -0.04
NUP54Q7Z3B4 SNRPB-201ENST00000381342 1154 ntAPPRIS ALT1 TSL 1 (best) BASIC14.82□□□□□ -0.04
NUP54Q7Z3B4 GPR162-202ENST00000382315 1150 ntTSL 1 (best) BASIC14.82□□□□□ -0.04
NUP54Q7Z3B4 AC004987.2-201ENST00000395959 1148 ntBASIC14.82□□□□□ -0.04
NUP54Q7Z3B4 PQLC3-202ENST00000402361 696 ntTSL 2 BASIC14.82□□□□□ -0.04
NUP54Q7Z3B4 LYPD5-202ENST00000414615 2137 ntAPPRIS P3 TSL 2 BASIC14.82□□□□□ -0.04
NUP54Q7Z3B4 SNRPB-202ENST00000438552 1008 ntAPPRIS P4 TSL 1 (best) BASIC14.82□□□□□ -0.04
NUP54Q7Z3B4 OST4-202ENST00000447619 458 ntAPPRIS P1 TSL 2 BASIC14.82□□□□□ -0.04
NUP54Q7Z3B4 C3orf67-212ENST00000491845 832 ntTSL 1 (best) BASIC14.82□□□□□ -0.04
NUP54Q7Z3B4 MTUS1-215ENST00000519066 567 ntTSL 4 BASIC14.82□□□□□ -0.04
NUP54Q7Z3B4 NDRG4-247ENST00000568640 1281 ntTSL 2 BASIC14.82□□□□□ -0.04
NUP54Q7Z3B4 AC027796.2-201ENST00000575326 344 ntBASIC14.82□□□□□ -0.04
NUP54Q7Z3B4 AC010336.3-201ENST00000597156 667 ntTSL 2 BASIC14.82□□□□□ -0.04
NUP54Q7Z3B4 AL133215.2-201ENST00000609242 977 ntBASIC14.82□□□□□ -0.04
NUP54Q7Z3B4 DBI-212ENST00000627305 620 ntTSL 1 (best) BASIC14.82□□□□□ -0.04
NUP54Q7Z3B4 GLUD1-201ENST00000277865 3039 ntAPPRIS P1 TSL 1 (best) BASIC14.82□□□□□ -0.04
NUP54Q7Z3B4 CETN4P-206ENST00000642099 2168 ntBASIC14.82□□□□□ -0.04
NUP54Q7Z3B4 ARHGEF16-202ENST00000378373 2211 ntTSL 1 (best) BASIC14.82□□□□□ -0.04
NUP54Q7Z3B4 MYO3A-206ENST00000543632 2203 ntTSL 1 (best) BASIC14.82□□□□□ -0.04
NUP54Q7Z3B4 FAF1-202ENST00000396153 6817 ntAPPRIS P1 TSL 1 (best) BASIC14.82□□□□□ -0.04
NUP54Q7Z3B4 AL136309.2-201ENST00000427049 2277 ntTSL 2 BASIC14.82□□□□□ -0.04
NUP54Q7Z3B4 SNX1-213ENST00000561026 1374 ntTSL 1 (best) BASIC14.82□□□□□ -0.04
NUP54Q7Z3B4 H2BFM-201ENST00000355016 1882 ntAPPRIS P1 TSL 2 BASIC14.82□□□□□ -0.04
NUP54Q7Z3B4 MPL-202ENST00000413998 1887 ntAPPRIS ALT2 TSL 1 (best) BASIC14.82□□□□□ -0.04
NUP54Q7Z3B4 SPATA18-202ENST00000419395 2816 ntTSL 2 BASIC14.82□□□□□ -0.04
NUP54Q7Z3B4 AMHR2-202ENST00000379791 1437 ntTSL 1 (best) BASIC14.82□□□□□ -0.04
NUP54Q7Z3B4 MAP4K5-201ENST00000013125 4354 ntAPPRIS P1 TSL 1 (best) BASIC14.82□□□□□ -0.04
NUP54Q7Z3B4 ZBTB7C-204ENST00000586438 4899 ntAPPRIS P1 TSL 1 (best) BASIC14.82□□□□□ -0.04
NUP54Q7Z3B4 KIAA2026-201ENST00000381461 6884 ntTSL 5 BASIC14.82□□□□□ -0.04
NUP54Q7Z3B4 AP001282.1-201ENST00000531301 1499 ntBASIC14.82□□□□□ -0.04
NUP54Q7Z3B4 KIAA0895-207ENST00000436884 1952 ntTSL 2 BASIC14.82□□□□□ -0.04
NUP54Q7Z3B4 PDK1-203ENST00000410055 2990 ntAPPRIS P3 TSL 1 (best) BASIC14.82□□□□□ -0.04
NUP54Q7Z3B4 PPP1R26-206ENST00000605660 4502 ntAPPRIS P1 BASIC14.82□□□□□ -0.04
NUP54Q7Z3B4 RAB9A-202ENST00000464506 2039 ntAPPRIS P1 TSL 1 (best) BASIC14.82□□□□□ -0.04
NUP54Q7Z3B4 LEF1-201ENST00000265165 3068 ntAPPRIS P3 TSL 1 (best) BASIC14.81□□□□□ -0.04
NUP54Q7Z3B4 SLC39A1-202ENST00000356205 2084 ntAPPRIS P1 TSL 1 (best) BASIC14.81□□□□□ -0.04
NUP54Q7Z3B4 TRIM11-201ENST00000284551 2715 ntAPPRIS P1 TSL 1 (best) BASIC14.81□□□□□ -0.04
NUP54Q7Z3B4 TMEM198B-203ENST00000482378 2230 ntTSL 1 (best) BASIC14.81□□□□□ -0.04
NUP54Q7Z3B4 AC006063.2-201ENST00000640161 1696 ntTSL 5 BASIC14.81□□□□□ -0.04
NUP54Q7Z3B4 FOXP3-202ENST00000376199 2274 ntTSL 2 BASIC14.81□□□□□ -0.04
NUP54Q7Z3B4 ACOX3-203ENST00000503233 2253 ntAPPRIS P1 TSL 1 (best) BASIC14.81□□□□□ -0.04
NUP54Q7Z3B4 ADRB1-201ENST00000369295 2853 ntAPPRIS P1 BASIC14.81□□□□□ -0.04
NUP54Q7Z3B4 TUBB3-201ENST00000315491 1769 ntAPPRIS P1 TSL 1 (best) BASIC14.81□□□□□ -0.04
NUP54Q7Z3B4 SPN-201ENST00000360121 6894 ntAPPRIS P2 TSL 1 (best) BASIC14.81□□□□□ -0.04
NUP54Q7Z3B4 POLR1C-201ENST00000304004 1280 ntTSL 1 (best) BASIC14.81□□□□□ -0.04
NUP54Q7Z3B4 NDUFA3-204ENST00000391764 267 ntTSL 3 BASIC14.81□□□□□ -0.04
NUP54Q7Z3B4 MIR943-201ENST00000401286 94 ntBASIC14.81□□□□□ -0.04
NUP54Q7Z3B4 ANKRD54-202ENST00000406423 954 ntTSL 3 BASIC14.81□□□□□ -0.04
NUP54Q7Z3B4 LINC01273-201ENST00000411453 685 ntTSL 2 BASIC14.81□□□□□ -0.04
NUP54Q7Z3B4 AC018685.2-201ENST00000414065 547 ntTSL 4 BASIC14.81□□□□□ -0.04
NUP54Q7Z3B4 AC124057.1-201ENST00000433035 404 ntTSL 5 BASIC14.81□□□□□ -0.04
NUP54Q7Z3B4 HLA-V-204ENST00000476601 1289 ntBASIC14.81□□□□□ -0.04
NUP54Q7Z3B4 SATB1-217ENST00000493952 626 ntTSL 3 BASIC14.81□□□□□ -0.04
NUP54Q7Z3B4 AC008750.1-201ENST00000532473 492 ntTSL 3 BASIC14.81□□□□□ -0.04
NUP54Q7Z3B4 AC027088.1-201ENST00000557966 1117 ntTSL 2 BASIC14.81□□□□□ -0.04
NUP54Q7Z3B4 AC026803.2-201ENST00000599784 819 ntTSL 3 BASIC14.81□□□□□ -0.04
NUP54Q7Z3B4 ZNF550-208ENST00000601415 515 ntTSL 4 BASIC14.81□□□□□ -0.04
NUP54Q7Z3B4 AL158211.3-201ENST00000607385 239 ntBASIC14.81□□□□□ -0.04
NUP54Q7Z3B4 AL589739.1-201ENST00000607720 493 ntBASIC14.81□□□□□ -0.04
NUP54Q7Z3B4 AC093512.1-201ENST00000617969 520 ntBASIC14.81□□□□□ -0.04
NUP54Q7Z3B4 CYP11A1-201ENST00000268053 1934 ntAPPRIS P1 TSL 1 (best) BASIC14.81□□□□□ -0.04
NUP54Q7Z3B4 DRG2-201ENST00000225729 1964 ntAPPRIS P1 TSL 1 (best) BASIC14.81□□□□□ -0.04
NUP54Q7Z3B4 TMEM140-201ENST00000275767 1997 ntAPPRIS P1 TSL 1 (best) BASIC14.81□□□□□ -0.04
NUP54Q7Z3B4 PHLDA1-203ENST00000619060 5913 ntAPPRIS P2 TSL 1 (best) BASIC14.81□□□□□ -0.04
NUP54Q7Z3B4 PITPNM2-202ENST00000320201 6736 ntAPPRIS P3 TSL 5 BASIC14.81□□□□□ -0.04
NUP54Q7Z3B4 IL11RA-215ENST00000602473 1388 ntTSL 1 (best) BASIC14.81□□□□□ -0.04
NUP54Q7Z3B4 KLHL36-204ENST00000564996 2173 ntAPPRIS P1 TSL 1 (best) BASIC14.81□□□□□ -0.04
NUP54Q7Z3B4 CEP170B-202ENST00000414716 6705 ntAPPRIS P2 TSL 1 (best) BASIC14.81□□□□□ -0.04
NUP54Q7Z3B4 WDR70-202ENST00000504564 1526 ntTSL 1 (best) BASIC14.81□□□□□ -0.04
NUP54Q7Z3B4 FGF11-201ENST00000293829 3063 ntAPPRIS P1 TSL 1 (best) BASIC14.81□□□□□ -0.04
NUP54Q7Z3B4 PPP1R26-204ENST00000604351 4640 ntAPPRIS P1 TSL 3 BASIC14.81□□□□□ -0.04
NUP54Q7Z3B4 SRCIN1-215ENST00000621492 4644 ntAPPRIS ALT2 TSL 5 BASIC14.81□□□□□ -0.04
NUP54Q7Z3B4 VPS16-203ENST00000380469 2318 ntTSL 2 BASIC14.81□□□□□ -0.04
NUP54Q7Z3B4 PI4KAP1-201ENST00000610959 2425 ntTSL 2 BASIC14.81□□□□□ -0.04
NUP54Q7Z3B4 UBE3B-202ENST00000342494 5722 ntAPPRIS P1 TSL 1 (best) BASIC14.81□□□□□ -0.04
NUP54Q7Z3B4 PDZRN3-201ENST00000263666 4248 ntAPPRIS P1 TSL 1 (best) BASIC14.81□□□□□ -0.04
NUP54Q7Z3B4 BMI1-201ENST00000376663 3428 ntAPPRIS P1 TSL 1 (best) BASIC14.8□□□□□ -0.04
NUP54Q7Z3B4 CTXND1-201ENST00000560778 6890 ntAPPRIS P1 TSL 3 BASIC14.8□□□□□ -0.04
NUP54Q7Z3B4 SATB2-205ENST00000443023 6194 ntTSL 5 BASIC14.8□□□□□ -0.04
NUP54Q7Z3B4 C2orf50-201ENST00000381585 2684 ntAPPRIS P1 TSL 1 (best) BASIC14.8□□□□□ -0.04
NUP54Q7Z3B4 GATA6-201ENST00000269216 3770 ntAPPRIS P1 TSL 1 (best) BASIC14.8□□□□□ -0.04
Retrieved 100 of 98,524 protein–RNA pairs in 31.2 ms