Protein–RNA interactions for Protein: Q5VIR6

VPS53, Vacuolar protein sorting-associated protein 53 homolog, humanhuman

Predictions only

Length 699 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
VPS53Q5VIR6 COQ4-205ENST00000609948 956 ntTSL 2 BASIC19.31■□□□□ 0.68
VPS53Q5VIR6 AL136317.3-201ENST00000618497 906 ntBASIC19.31■□□□□ 0.68
VPS53Q5VIR6 SLC29A1-209ENST00000427851 2171 ntAPPRIS P1 TSL 1 (best) BASIC19.31■□□□□ 0.68
VPS53Q5VIR6 TMEM140-201ENST00000275767 1997 ntAPPRIS P1 TSL 1 (best) BASIC19.31■□□□□ 0.68
VPS53Q5VIR6 SLC27A6-201ENST00000262462 3219 ntAPPRIS P1 TSL 1 (best) BASIC19.31■□□□□ 0.68
VPS53Q5VIR6 RASGRP2-201ENST00000354024 2310 ntAPPRIS P2 TSL 1 (best) BASIC19.31■□□□□ 0.68
VPS53Q5VIR6 TOM1L2-209ENST00000540946 1420 ntTSL 2 BASIC19.31■□□□□ 0.68
VPS53Q5VIR6 SPATA21-205ENST00000540400 1773 ntAPPRIS ALT2 TSL 1 (best) BASIC19.31■□□□□ 0.68
VPS53Q5VIR6 ZBTB47-202ENST00000505904 2456 ntTSL 5 BASIC19.31■□□□□ 0.68
VPS53Q5VIR6 GHR-201ENST00000230882 4560 ntAPPRIS P1 TSL 1 (best) BASIC19.31■□□□□ 0.68
VPS53Q5VIR6 NAF1-201ENST00000274054 1907 ntAPPRIS P3 TSL 1 (best) BASIC19.31■□□□□ 0.68
VPS53Q5VIR6 PRKCZ-202ENST00000400921 2294 ntTSL 1 (best) BASIC19.31■□□□□ 0.68
VPS53Q5VIR6 FAM104A-201ENST00000403627 2798 ntAPPRIS P1 TSL 1 (best) BASIC19.31■□□□□ 0.68
VPS53Q5VIR6 CDIP1-209ENST00000567695 2062 ntAPPRIS P1 TSL 1 (best) BASIC19.31■□□□□ 0.68
VPS53Q5VIR6 IRF9-203ENST00000557894 1391 ntTSL 5 BASIC19.31■□□□□ 0.68
VPS53Q5VIR6 NSMF-205ENST00000371474 3571 ntAPPRIS ALT1 TSL 1 (best) BASIC19.31■□□□□ 0.68
VPS53Q5VIR6 NSMF-208ENST00000437259 3577 ntAPPRIS ALT1 TSL 5 BASIC19.31■□□□□ 0.68
VPS53Q5VIR6 FNDC1-201ENST00000297267 6552 ntAPPRIS P1 TSL 1 (best) BASIC19.3■□□□□ 0.68
VPS53Q5VIR6 C8orf76-201ENST00000276704 1341 ntAPPRIS P1 TSL 1 (best) BASIC19.3■□□□□ 0.68
VPS53Q5VIR6 ZDHHC19-201ENST00000296326 1306 ntAPPRIS P1 TSL 5 BASIC19.3■□□□□ 0.68
VPS53Q5VIR6 DACT1-202ENST00000395153 3734 ntAPPRIS ALT2 TSL 5 BASIC19.3■□□□□ 0.68
VPS53Q5VIR6 TUBG2-201ENST00000251412 1761 ntAPPRIS P1 TSL 1 (best) BASIC19.3■□□□□ 0.68
VPS53Q5VIR6 DUSP13-203ENST00000372702 1778 ntAPPRIS ALT1 TSL 1 (best) BASIC19.3■□□□□ 0.68
VPS53Q5VIR6 ELF2-204ENST00000394235 4012 ntAPPRIS P1 TSL 5 BASIC19.3■□□□□ 0.68
VPS53Q5VIR6 CPSF6-203ENST00000456847 1915 ntTSL 5 BASIC19.3■□□□□ 0.68
VPS53Q5VIR6 FAM104A-202ENST00000405159 2865 ntTSL 1 (best) BASIC19.3■□□□□ 0.68
VPS53Q5VIR6 CCDC12-201ENST00000292314 1017 ntTSL 5 BASIC19.3■□□□□ 0.68
VPS53Q5VIR6 POP7-201ENST00000303151 927 ntAPPRIS P1 TSL 1 (best) BASIC19.3■□□□□ 0.68
VPS53Q5VIR6 HRCT1-201ENST00000354323 950 ntAPPRIS P1 BASIC19.3■□□□□ 0.68
VPS53Q5VIR6 NKAIN2-201ENST00000368416 1106 ntTSL 1 (best) BASIC19.3■□□□□ 0.68
VPS53Q5VIR6 WLS-203ENST00000370971 700 ntTSL 1 (best) BASIC19.3■□□□□ 0.68
VPS53Q5VIR6 ZNF593-202ENST00000374266 675 ntAPPRIS P1 TSL 1 (best) BASIC19.3■□□□□ 0.68
VPS53Q5VIR6 AC026202.2-201ENST00000439325 672 ntTSL 2 BASIC19.3■□□□□ 0.68
VPS53Q5VIR6 KLF2P3-201ENST00000451977 1087 ntBASIC19.3■□□□□ 0.68
VPS53Q5VIR6 AC125807.1-201ENST00000483097 614 ntBASIC19.3■□□□□ 0.68
VPS53Q5VIR6 APBB2-208ENST00000504305 1274 ntTSL 5 BASIC19.3■□□□□ 0.68
VPS53Q5VIR6 LITAF-210ENST00000571976 548 ntTSL 2 BASIC19.3■□□□□ 0.68
VPS53Q5VIR6 LITAF-214ENST00000574703 486 ntTSL 2 BASIC19.3■□□□□ 0.68
VPS53Q5VIR6 AC027796.2-201ENST00000575326 344 ntBASIC19.3■□□□□ 0.68
VPS53Q5VIR6 AL390955.2-201ENST00000603032 514 ntBASIC19.3■□□□□ 0.68
VPS53Q5VIR6 GRIFIN-202ENST00000614228 461 ntAPPRIS P1 TSL 5 BASIC19.3■□□□□ 0.68
VPS53Q5VIR6 AC093512.1-201ENST00000617969 520 ntBASIC19.3■□□□□ 0.68
VPS53Q5VIR6 KIFC3-206ENST00000541240 3047 ntTSL 2 BASIC19.3■□□□□ 0.68
VPS53Q5VIR6 ARFGAP1-210ENST00000519273 3176 ntTSL 2 BASIC19.3■□□□□ 0.68
VPS53Q5VIR6 AL691432.1-201ENST00000596308 1422 ntBASIC19.3■□□□□ 0.68
VPS53Q5VIR6 PRKACG-201ENST00000377276 1585 ntAPPRIS P1 BASIC19.3■□□□□ 0.68
VPS53Q5VIR6 KCNA5-201ENST00000252321 2800 ntAPPRIS P1 BASIC19.3■□□□□ 0.68
VPS53Q5VIR6 ATP6V0E2-AS1-201ENST00000461019 2973 ntTSL 1 (best) BASIC19.3■□□□□ 0.68
VPS53Q5VIR6 TAP2-205ENST00000620123 5676 ntAPPRIS ALT2 TSL 5 BASIC19.3■□□□□ 0.68
VPS53Q5VIR6 CAMTA1-201ENST00000303635 8444 ntAPPRIS P1 TSL 1 (best) BASIC19.3■□□□□ 0.68
VPS53Q5VIR6 C12orf42-201ENST00000378113 1513 ntAPPRIS P2 TSL 5 BASIC19.3■□□□□ 0.68
VPS53Q5VIR6 RAB5C-201ENST00000346213 1671 ntAPPRIS P1 TSL 1 (best) BASIC19.3■□□□□ 0.68
VPS53Q5VIR6 PRMT1-217ENST00000532489 1686 ntTSL 5 BASIC19.3■□□□□ 0.68
VPS53Q5VIR6 CCT7-216ENST00000540468 1674 ntTSL 2 BASIC19.3■□□□□ 0.68
VPS53Q5VIR6 CIAPIN1-207ENST00000565961 1814 ntTSL 3 BASIC19.3■□□□□ 0.68
VPS53Q5VIR6 RCOR1-201ENST00000262241 5754 ntAPPRIS P1 TSL 1 (best) BASIC19.3■□□□□ 0.68
VPS53Q5VIR6 TFPI2-201ENST00000222543 2444 ntAPPRIS P1 TSL 1 (best) BASIC19.3■□□□□ 0.68
VPS53Q5VIR6 SHROOM2-201ENST00000380913 7447 ntAPPRIS P1 TSL 1 (best) BASIC19.3■□□□□ 0.68
VPS53Q5VIR6 GDF5-201ENST00000374369 2383 ntAPPRIS P1 TSL 1 (best) BASIC19.29■□□□□ 0.68
VPS53Q5VIR6 OSBPL6-203ENST00000357080 2217 ntTSL 1 (best) BASIC19.29■□□□□ 0.68
VPS53Q5VIR6 AP001122.1-202ENST00000501648 1916 ntTSL 2 BASIC19.29■□□□□ 0.68
VPS53Q5VIR6 SLC17A3-202ENST00000360657 1750 ntTSL 2 BASIC19.29■□□□□ 0.68
VPS53Q5VIR6 ETV2-204ENST00000403402 1335 ntAPPRIS P3 TSL 1 (best) BASIC19.29■□□□□ 0.68
VPS53Q5VIR6 ACE-202ENST00000290866 4959 ntAPPRIS P1 TSL 1 (best) BASIC19.29■□□□□ 0.68
VPS53Q5VIR6 CISH-201ENST00000348721 2043 ntAPPRIS P1 TSL 1 (best) BASIC19.29■□□□□ 0.68
VPS53Q5VIR6 CYP4F24P-201ENST00000586049 1580 ntBASIC19.29■□□□□ 0.68
VPS53Q5VIR6 MC1R-204ENST00000639847 2567 ntAPPRIS P1 TSL 5 BASIC19.29■□□□□ 0.68
VPS53Q5VIR6 MFSD1-203ENST00000415822 2423 ntTSL 1 (best) BASIC19.29■□□□□ 0.68
VPS53Q5VIR6 C16orf92-201ENST00000300575 895 ntAPPRIS P2 TSL 1 (best) BASIC19.29■□□□□ 0.68
VPS53Q5VIR6 OR52W1-201ENST00000311352 1114 ntAPPRIS P1 BASIC19.29■□□□□ 0.68
VPS53Q5VIR6 RBM39-205ENST00000397370 612 ntTSL 2 BASIC19.29■□□□□ 0.68
VPS53Q5VIR6 HAUS4P1-201ENST00000406739 1145 ntBASIC19.29■□□□□ 0.68
VPS53Q5VIR6 TMEM191A-202ENST00000419950 663 ntTSL 3 BASIC19.29■□□□□ 0.68
VPS53Q5VIR6 MTND6P24-201ENST00000440466 518 ntBASIC19.29■□□□□ 0.68
VPS53Q5VIR6 NSUN5P1-208ENST00000473960 500 ntTSL 3 BASIC19.29■□□□□ 0.68
VPS53Q5VIR6 DRAM1-202ENST00000544152 1048 ntTSL 2 BASIC19.29■□□□□ 0.68
VPS53Q5VIR6 NDUFA4L2-202ENST00000554503 1177 ntAPPRIS P1 TSL 1 (best) BASIC19.29■□□□□ 0.68
VPS53Q5VIR6 AC138304.1-201ENST00000563841 424 ntTSL 3 BASIC19.29■□□□□ 0.68
VPS53Q5VIR6 AC020978.5-201ENST00000564147 533 ntTSL 4 BASIC19.29■□□□□ 0.68
VPS53Q5VIR6 AC005306.1-201ENST00000587498 661 ntTSL 3 BASIC19.29■□□□□ 0.68
VPS53Q5VIR6 Z99756.1-201ENST00000458463 1951 ntTSL 1 (best) BASIC19.29■□□□□ 0.68
VPS53Q5VIR6 NKIRAS1-208ENST00000443659 2391 ntAPPRIS P2 TSL 5 BASIC19.29■□□□□ 0.68
VPS53Q5VIR6 FHL2-205ENST00000393353 1531 ntAPPRIS P1 TSL 1 (best) BASIC19.29■□□□□ 0.68
VPS53Q5VIR6 ABCB9-216ENST00000542678 6051 ntAPPRIS P2 TSL 1 (best) BASIC19.29■□□□□ 0.68
VPS53Q5VIR6 ZFPL1-201ENST00000294258 1371 ntAPPRIS P1 TSL 1 (best) BASIC19.29■□□□□ 0.68
VPS53Q5VIR6 LDOC1-201ENST00000370526 1381 ntAPPRIS P1 BASIC19.29■□□□□ 0.68
VPS53Q5VIR6 WDR45-240ENST00000635003 1376 ntTSL 3 BASIC19.29■□□□□ 0.68
VPS53Q5VIR6 NBEAL2-205ENST00000450053 8827 ntAPPRIS P1 TSL 2 BASIC19.29■□□□□ 0.68
VPS53Q5VIR6 PDXK-202ENST00000327574 2583 ntTSL 2 BASIC19.29■□□□□ 0.68
VPS53Q5VIR6 UAP1L1-202ENST00000409858 3365 ntAPPRIS P1 TSL 1 (best) BASIC19.29■□□□□ 0.68
VPS53Q5VIR6 CHMP1A-202ENST00000535997 2295 ntTSL 2 BASIC19.28■□□□□ 0.68
VPS53Q5VIR6 BNIP3P1-202ENST00000550043 1585 ntBASIC19.28■□□□□ 0.68
VPS53Q5VIR6 AP000253.1-201ENST00000449339 2233 ntTSL 3 BASIC19.28■□□□□ 0.68
VPS53Q5VIR6 VOPP1-207ENST00000428648 2866 ntTSL 2 BASIC19.28■□□□□ 0.68
VPS53Q5VIR6 BRF1-206ENST00000446501 2858 ntTSL 2 BASIC19.28■□□□□ 0.68
VPS53Q5VIR6 OTOL1-201ENST00000327928 1434 ntAPPRIS P1 TSL 2 BASIC19.28■□□□□ 0.68
VPS53Q5VIR6 PTOV1-219ENST00000601638 1413 ntTSL 5 BASIC19.28■□□□□ 0.68
VPS53Q5VIR6 NFATC4-201ENST00000250373 4749 ntAPPRIS P3 TSL 1 (best) BASIC19.28■□□□□ 0.68
VPS53Q5VIR6 S100A14-204ENST00000368702 1218 ntAPPRIS P1 TSL 3 BASIC19.28■□□□□ 0.68
VPS53Q5VIR6 MRNIP-202ENST00000376931 1004 ntAPPRIS ALT2 TSL 2 BASIC19.28■□□□□ 0.68
Retrieved 100 of 98,524 protein–RNA pairs in 44.8 ms