Protein–RNA interactions for Protein: Q3MJ40

CCDC144B, Coiled-coil domain-containing protein 144B, humanhuman

Predictions only

Length 725 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
CCDC144BQ3MJ40 PHKG2-201ENST00000328273 1536 ntAPPRIS ALT1 TSL 5 BASIC18.57■□□□□ 0.56
CCDC144BQ3MJ40 MIEF2-203ENST00000395704 2879 ntTSL 2 BASIC18.57■□□□□ 0.56
CCDC144BQ3MJ40 NIM1K-201ENST00000326035 2313 ntAPPRIS P1 TSL 1 (best) BASIC18.57■□□□□ 0.56
CCDC144BQ3MJ40 COQ8B-201ENST00000243583 2041 ntAPPRIS ALT2 TSL 1 (best) BASIC18.57■□□□□ 0.56
CCDC144BQ3MJ40 NCALD-217ENST00000521599 2289 ntAPPRIS P1 TSL 1 (best) BASIC18.57■□□□□ 0.56
CCDC144BQ3MJ40 TSPY26P-202ENST00000565928 3884 ntBASIC18.57■□□□□ 0.56
CCDC144BQ3MJ40 KRT8P39-201ENST00000396270 1433 ntBASIC18.57■□□□□ 0.56
CCDC144BQ3MJ40 KREMEN1-203ENST00000407188 1422 ntAPPRIS ALT2 TSL 1 (best) BASIC18.57■□□□□ 0.56
CCDC144BQ3MJ40 FAHD2B-202ENST00000414820 1388 ntAPPRIS P1 TSL 5 BASIC18.56■□□□□ 0.56
CCDC144BQ3MJ40 FUT7-201ENST00000314412 2584 ntAPPRIS P1 TSL 1 (best) BASIC18.56■□□□□ 0.56
CCDC144BQ3MJ40 CNOT10-202ENST00000331889 2573 ntTSL 1 (best) BASIC18.56■□□□□ 0.56
CCDC144BQ3MJ40 KIAA1755-206ENST00000496900 2557 ntAPPRIS ALT2 TSL 2 BASIC18.56■□□□□ 0.56
CCDC144BQ3MJ40 ATP5B-201ENST00000262030 1839 ntAPPRIS P1 TSL 1 (best) BASIC18.56■□□□□ 0.56
CCDC144BQ3MJ40 RNASE4-203ENST00000555835 2520 ntAPPRIS P1 TSL 1 (best) BASIC18.56■□□□□ 0.56
CCDC144BQ3MJ40 Z99756.1-201ENST00000458463 1951 ntTSL 1 (best) BASIC18.56■□□□□ 0.56
CCDC144BQ3MJ40 C12orf10-201ENST00000267103 1192 ntAPPRIS P1 TSL 1 (best) BASIC18.56■□□□□ 0.56
CCDC144BQ3MJ40 PKIG-202ENST00000372886 1180 ntAPPRIS P1 TSL 2 BASIC18.56■□□□□ 0.56
CCDC144BQ3MJ40 DPM2-202ENST00000373110 738 ntTSL 2 BASIC18.56■□□□□ 0.56
CCDC144BQ3MJ40 NPM2-202ENST00000381530 925 ntTSL 1 (best) BASIC18.56■□□□□ 0.56
CCDC144BQ3MJ40 SPSB2-204ENST00000523102 1205 ntAPPRIS P1 TSL 1 (best) BASIC18.56■□□□□ 0.56
CCDC144BQ3MJ40 SPSB2-205ENST00000524270 1236 ntAPPRIS P1 TSL 1 (best) BASIC18.56■□□□□ 0.56
CCDC144BQ3MJ40 SLC8B1-206ENST00000549069 1058 ntTSL 2 BASIC18.56■□□□□ 0.56
CCDC144BQ3MJ40 AC009133.1-203ENST00000569039 589 ntTSL 2 BASIC18.56■□□□□ 0.56
CCDC144BQ3MJ40 AC015688.8-201ENST00000577746 656 ntTSL 4 BASIC18.56■□□□□ 0.56
CCDC144BQ3MJ40 MRPS23-202ENST00000578444 580 ntTSL 2 BASIC18.56■□□□□ 0.56
CCDC144BQ3MJ40 AL008721.1-201ENST00000609964 604 ntBASIC18.56■□□□□ 0.56
CCDC144BQ3MJ40 Metazoa_SRP.112-201ENST00000613101 279 ntBASIC18.56■□□□□ 0.56
CCDC144BQ3MJ40 LOXL3-203ENST00000409249 2431 ntTSL 5 BASIC18.56■□□□□ 0.56
CCDC144BQ3MJ40 LIMS2-217ENST00000545738 1730 ntTSL 5 BASIC18.56■□□□□ 0.56
CCDC144BQ3MJ40 PITPNM2-AS1-201ENST00000506255 2191 ntTSL 2 BASIC18.56■□□□□ 0.56
CCDC144BQ3MJ40 AC007541.1-201ENST00000570282 1469 ntBASIC18.56■□□□□ 0.56
CCDC144BQ3MJ40 PEPD-201ENST00000244137 1910 ntAPPRIS P1 TSL 1 (best) BASIC18.56■□□□□ 0.56
CCDC144BQ3MJ40 FUT5-201ENST00000252675 1916 ntAPPRIS P1 BASIC18.56■□□□□ 0.56
CCDC144BQ3MJ40 ULK4-203ENST00000420927 1904 ntTSL 1 (best) BASIC18.56■□□□□ 0.56
CCDC144BQ3MJ40 CDH1-202ENST00000422392 2567 ntTSL 1 (best) BASIC18.56■□□□□ 0.56
CCDC144BQ3MJ40 PDE4DIP-230ENST00000530472 1690 ntTSL 1 (best) BASIC18.56■□□□□ 0.56
CCDC144BQ3MJ40 RAD1-208ENST00000628399 1678 ntTSL 3 BASIC18.56■□□□□ 0.56
CCDC144BQ3MJ40 SGSH-201ENST00000326317 2784 ntAPPRIS P1 TSL 1 (best) BASIC18.56■□□□□ 0.56
CCDC144BQ3MJ40 F3-202ENST00000370207 1879 ntTSL 1 (best) BASIC18.56■□□□□ 0.56
CCDC144BQ3MJ40 NLGN2-201ENST00000302926 4642 ntAPPRIS P1 TSL 1 (best) BASIC18.56■□□□□ 0.56
CCDC144BQ3MJ40 FAM49B-202ENST00000517654 1817 ntAPPRIS P1 TSL 5 BASIC18.56■□□□□ 0.56
CCDC144BQ3MJ40 F11R-202ENST00000368026 4835 ntAPPRIS P1 TSL 1 (best) BASIC18.56■□□□□ 0.56
CCDC144BQ3MJ40 USH1C-202ENST00000318024 2237 ntAPPRIS ALT2 TSL 1 (best) BASIC18.55■□□□□ 0.56
CCDC144BQ3MJ40 FP565260.3-204ENST00000623795 2238 ntTSL 2 BASIC18.55■□□□□ 0.56
CCDC144BQ3MJ40 HNF1A-211ENST00000543427 2819 ntTSL 5 BASIC18.55■□□□□ 0.56
CCDC144BQ3MJ40 C17orf100-201ENST00000542475 1756 ntAPPRIS P1 BASIC18.55■□□□□ 0.56
CCDC144BQ3MJ40 COL26A1-201ENST00000313669 3033 ntAPPRIS P2 TSL 1 (best) BASIC18.55■□□□□ 0.56
CCDC144BQ3MJ40 MINDY1-202ENST00000361738 1961 ntTSL 2 BASIC18.55■□□□□ 0.56
CCDC144BQ3MJ40 SLC43A1-204ENST00000528450 2358 ntAPPRIS P1 TSL 1 (best) BASIC18.55■□□□□ 0.56
CCDC144BQ3MJ40 ASTN2-205ENST00000361209 4622 ntAPPRIS P2 TSL 1 (best) BASIC18.55■□□□□ 0.56
CCDC144BQ3MJ40 MRPS22-212ENST00000495075 1547 ntAPPRIS P2 TSL 1 (best) BASIC18.55■□□□□ 0.56
CCDC144BQ3MJ40 PRMT5-203ENST00000397440 1907 ntTSL 1 (best) BASIC18.55■□□□□ 0.56
CCDC144BQ3MJ40 AHCY-201ENST00000217426 2143 ntAPPRIS P1 TSL 1 (best) BASIC18.55■□□□□ 0.56
CCDC144BQ3MJ40 CDCP1-201ENST00000296129 6006 ntAPPRIS P3 TSL 1 (best) BASIC18.55■□□□□ 0.56
CCDC144BQ3MJ40 ZNF354C-201ENST00000315475 5411 ntAPPRIS P1 TSL 1 (best) BASIC18.55■□□□□ 0.56
CCDC144BQ3MJ40 HIST1H2AC-202ENST00000377791 1654 ntAPPRIS P1 TSL 1 (best) BASIC18.55■□□□□ 0.56
CCDC144BQ3MJ40 RBM3-202ENST00000376755 1130 ntAPPRIS P1 TSL 2 BASIC18.55■□□□□ 0.56
CCDC144BQ3MJ40 CIB3-202ENST00000379859 467 ntTSL 1 (best) BASIC18.55■□□□□ 0.56
CCDC144BQ3MJ40 CBX7-202ENST00000401405 784 ntTSL 1 (best) BASIC18.55■□□□□ 0.56
CCDC144BQ3MJ40 CENPM-206ENST00000407253 818 ntTSL 2 BASIC18.55■□□□□ 0.56
CCDC144BQ3MJ40 AC008278.1-201ENST00000431117 568 ntTSL 4 BASIC18.55■□□□□ 0.56
CCDC144BQ3MJ40 LINC01160-201ENST00000441004 768 ntTSL 3 BASIC18.55■□□□□ 0.56
CCDC144BQ3MJ40 FAM86HP-203ENST00000511564 521 ntTSL 2 BASIC18.55■□□□□ 0.56
CCDC144BQ3MJ40 AP002008.1-201ENST00000530283 1155 ntTSL 1 (best) BASIC18.55■□□□□ 0.56
CCDC144BQ3MJ40 PPP1R14B-203ENST00000542235 920 ntTSL 1 (best) BASIC18.55■□□□□ 0.56
CCDC144BQ3MJ40 AL079307.3-201ENST00000556114 283 ntBASIC18.55■□□□□ 0.56
CCDC144BQ3MJ40 TP53TG3HP-202ENST00000569755 579 ntBASIC18.55■□□□□ 0.56
CCDC144BQ3MJ40 AL132655.2-201ENST00000596276 594 ntBASIC18.55■□□□□ 0.56
CCDC144BQ3MJ40 FHL2-212ENST00000607522 759 ntTSL 2 BASIC18.55■□□□□ 0.56
CCDC144BQ3MJ40 RNA5-8SN1-201ENST00000610460 153 ntBASIC18.55■□□□□ 0.56
CCDC144BQ3MJ40 RNA5-8SN5-202ENST00000612463 153 ntBASIC18.55■□□□□ 0.56
CCDC144BQ3MJ40 RNA5-8SN4-201ENST00000613359 153 ntBASIC18.55■□□□□ 0.56
CCDC144BQ3MJ40 RNA5-8SN5-201ENST00000619471 153 ntBASIC18.55■□□□□ 0.56
CCDC144BQ3MJ40 SLC39A8-202ENST00000394833 3238 ntAPPRIS P1 TSL 1 (best) BASIC18.55■□□□□ 0.56
CCDC144BQ3MJ40 TBRG4-203ENST00000395655 2225 ntTSL 2 BASIC18.55■□□□□ 0.56
CCDC144BQ3MJ40 UBFD1-201ENST00000395878 5110 ntAPPRIS P2 TSL 2 BASIC18.55■□□□□ 0.56
CCDC144BQ3MJ40 MAP4K4-202ENST00000324219 7526 ntTSL 5 BASIC18.55■□□□□ 0.56
CCDC144BQ3MJ40 AC012313.3-202ENST00000599109 3322 ntTSL 5 BASIC18.55■□□□□ 0.56
CCDC144BQ3MJ40 CU639417.3-201ENST00000624240 1404 ntBASIC18.55■□□□□ 0.56
CCDC144BQ3MJ40 TRIP10-201ENST00000313244 2153 ntTSL 1 (best) BASIC18.55■□□□□ 0.56
CCDC144BQ3MJ40 FOXI2-201ENST00000388920 3217 ntAPPRIS P1 TSL 1 (best) BASIC18.55■□□□□ 0.56
CCDC144BQ3MJ40 PABPC4-201ENST00000372856 3016 ntAPPRIS P1 TSL 1 (best) BASIC18.55■□□□□ 0.56
CCDC144BQ3MJ40 GRIK5-204ENST00000593562 3308 ntAPPRIS P1 TSL 5 BASIC18.54■□□□□ 0.56
CCDC144BQ3MJ40 TEKT2-201ENST00000207457 1509 ntAPPRIS P1 TSL 1 (best) BASIC18.54■□□□□ 0.56
CCDC144BQ3MJ40 DDTL-201ENST00000215770 1545 ntAPPRIS P1 TSL 2 BASIC18.54■□□□□ 0.56
CCDC144BQ3MJ40 NFIX-214ENST00000592199 1509 ntTSL 5 BASIC18.54■□□□□ 0.56
CCDC144BQ3MJ40 EDA-204ENST00000374553 5272 ntAPPRIS ALT1 TSL 1 (best) BASIC18.54■□□□□ 0.56
CCDC144BQ3MJ40 SCP2-201ENST00000371509 1889 ntTSL 1 (best) BASIC18.54■□□□□ 0.56
CCDC144BQ3MJ40 ARMC6-203ENST00000392336 1866 ntTSL 2 BASIC18.54■□□□□ 0.56
CCDC144BQ3MJ40 CASK-202ENST00000378158 3848 ntTSL 5 BASIC18.54■□□□□ 0.56
CCDC144BQ3MJ40 WNT2-201ENST00000265441 2907 ntAPPRIS P1 TSL 1 (best) BASIC18.54■□□□□ 0.56
CCDC144BQ3MJ40 TEAD3-204ENST00000639578 1308 ntAPPRIS P2 TSL 1 (best) BASIC18.54■□□□□ 0.56
CCDC144BQ3MJ40 CD8A-201ENST00000283635 2873 ntAPPRIS P4 TSL 1 (best) BASIC18.54■□□□□ 0.56
CCDC144BQ3MJ40 MARCO-201ENST00000327097 1838 ntAPPRIS P1 TSL 1 (best) BASIC18.54■□□□□ 0.56
CCDC144BQ3MJ40 BCL11A-203ENST00000358510 2697 ntAPPRIS P1 TSL 1 (best) BASIC18.54■□□□□ 0.56
CCDC144BQ3MJ40 GRAMD4-203ENST00000408031 2834 ntTSL 1 (best) BASIC18.54■□□□□ 0.56
CCDC144BQ3MJ40 FIBP-201ENST00000338369 1261 ntTSL 1 (best) BASIC18.54■□□□□ 0.56
CCDC144BQ3MJ40 VHLL-201ENST00000339922 676 ntAPPRIS P1 BASIC18.54■□□□□ 0.56
CCDC144BQ3MJ40 FCRLB-204ENST00000367946 1152 ntTSL 1 (best) BASIC18.54■□□□□ 0.56
CCDC144BQ3MJ40 SLC29A1-206ENST00000371755 2112 ntAPPRIS P1 TSL 1 (best) BASIC18.54■□□□□ 0.56
Retrieved 100 of 98,524 protein–RNA pairs in 30.4 ms