Protein–RNA interactions for Protein: P98160

HSPG2, Basement membrane-specific heparan sulfate proteoglycan core protein, humanhuman

Predictions only

Length 4,391 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
HSPG2P98160 NOP14-202ENST00000398071 2535 ntAPPRIS ALT2 TSL 1 (best) BASIC9.63□□□□□ -0.87
HSPG2P98160 TCP1-201ENST00000321394 2499 ntAPPRIS P1 TSL 1 (best) BASIC9.63□□□□□ -0.87
HSPG2P98160 PTPN20-203ENST00000374342 1929 ntTSL 1 (best) BASIC9.63□□□□□ -0.87
HSPG2P98160 OR2K2-202ENST00000374428 1038 ntBASIC9.63□□□□□ -0.87
HSPG2P98160 CCDC107-204ENST00000378409 1173 ntAPPRIS ALT2 TSL 1 (best) BASIC9.63□□□□□ -0.87
HSPG2P98160 DHDDS-206ENST00000427245 868 ntTSL 5 BASIC9.63□□□□□ -0.87
HSPG2P98160 HCFC1-AS1-201ENST00000438219 350 ntTSL 3 BASIC9.63□□□□□ -0.87
HSPG2P98160 HIST2H2BF-204ENST00000545683 999 ntTSL 2 BASIC9.63□□□□□ -0.87
HSPG2P98160 AC145207.8-201ENST00000580897 563 ntTSL 4 BASIC9.63□□□□□ -0.87
HSPG2P98160 AC005632.3-201ENST00000605544 308 ntBASIC9.63□□□□□ -0.87
HSPG2P98160 AC104333.4-201ENST00000632866 554 ntTSL 3 BASIC9.63□□□□□ -0.87
HSPG2P98160 UBL7-201ENST00000361351 1360 ntAPPRIS P1 TSL 5 BASIC9.63□□□□□ -0.87
HSPG2P98160 FAM109A-204ENST00000548163 2317 ntAPPRIS P3 TSL 2 BASIC9.63□□□□□ -0.87
HSPG2P98160 AC067852.2-201ENST00000590513 2313 ntBASIC9.63□□□□□ -0.87
HSPG2P98160 PSEN2-211ENST00000626989 1972 ntTSL 5 BASIC9.63□□□□□ -0.87
HSPG2P98160 GDF10-201ENST00000580279 2458 ntAPPRIS P1 TSL 1 (best) BASIC9.62□□□□□ -0.87
HSPG2P98160 ECEL1-201ENST00000304546 2865 ntAPPRIS P3 TSL 1 (best) BASIC9.62□□□□□ -0.87
HSPG2P98160 CNIH3-201ENST00000272133 2558 ntAPPRIS P1 TSL 1 (best) BASIC9.62□□□□□ -0.87
HSPG2P98160 SLC29A1-203ENST00000371724 2275 ntAPPRIS P1 TSL 5 BASIC9.62□□□□□ -0.87
HSPG2P98160 PACRGL-202ENST00000360916 2073 ntTSL 1 (best) BASIC9.62□□□□□ -0.87
HSPG2P98160 TTPAL-203ENST00000372906 1139 ntTSL 3 BASIC9.62□□□□□ -0.87
HSPG2P98160 RAD51C-203ENST00000421782 567 ntTSL 1 (best) BASIC9.62□□□□□ -0.87
HSPG2P98160 PKD2-202ENST00000502363 1222 ntTSL 5 BASIC9.62□□□□□ -0.87
HSPG2P98160 AC109479.3-201ENST00000520163 360 ntTSL 3 BASIC9.62□□□□□ -0.87
HSPG2P98160 NDUFC1-210ENST00000539387 725 ntAPPRIS P1 TSL 2 BASIC9.62□□□□□ -0.87
HSPG2P98160 EMX2-201ENST00000442245 2710 ntTSL 2 BASIC9.62□□□□□ -0.87
HSPG2P98160 FMNL1-201ENST00000328118 2330 ntTSL 2 BASIC9.62□□□□□ -0.87
HSPG2P98160 B3GALT5-206ENST00000615480 2617 ntAPPRIS P1 TSL 2 BASIC9.62□□□□□ -0.87
HSPG2P98160 EIF3B-201ENST00000360876 3055 ntAPPRIS P1 TSL 1 (best) BASIC9.62□□□□□ -0.87
HSPG2P98160 SATB2-203ENST00000428695 2135 ntTSL 1 (best) BASIC9.62□□□□□ -0.87
HSPG2P98160 PCTP-201ENST00000268896 2044 ntAPPRIS P1 TSL 1 (best) BASIC9.62□□□□□ -0.87
HSPG2P98160 CRHR1-205ENST00000352855 1146 ntTSL 1 (best) BASIC9.62□□□□□ -0.87
HSPG2P98160 TMEM239-202ENST00000380585 571 ntAPPRIS P1 TSL 1 (best) BASIC9.62□□□□□ -0.87
HSPG2P98160 REEP5-205ENST00000504247 480 ntTSL 5 BASIC9.62□□□□□ -0.87
HSPG2P98160 REEP5-207ENST00000513339 1139 ntTSL 2 BASIC9.62□□□□□ -0.87
HSPG2P98160 AC084346.1-201ENST00000520962 528 ntTSL 4 BASIC9.62□□□□□ -0.87
HSPG2P98160 ANAPC15-208ENST00000538393 867 ntAPPRIS P3 TSL 2 BASIC9.62□□□□□ -0.87
HSPG2P98160 AC244250.3-201ENST00000620749 366 ntBASIC9.62□□□□□ -0.87
HSPG2P98160 DOLK-201ENST00000372586 2090 ntAPPRIS P1 BASIC9.62□□□□□ -0.87
HSPG2P98160 AC134407.2-201ENST00000625089 1978 ntBASIC9.62□□□□□ -0.87
HSPG2P98160 NFIX-214ENST00000592199 1509 ntTSL 5 BASIC9.62□□□□□ -0.87
HSPG2P98160 SCGN-203ENST00000612225 1402 ntTSL 5 BASIC9.62□□□□□ -0.87
HSPG2P98160 SLC22A18AS-203ENST00000625099 1659 ntAPPRIS ALT2 TSL 1 (best) BASIC9.62□□□□□ -0.87
HSPG2P98160 TXNRD2-218ENST00000542719 2024 ntTSL 1 (best) BASIC9.62□□□□□ -0.87
HSPG2P98160 LIN54-209ENST00000510557 2257 ntTSL 2 BASIC9.62□□□□□ -0.87
HSPG2P98160 GRAMD2B-218ENST00000542322 2977 ntTSL 2 BASIC9.62□□□□□ -0.87
HSPG2P98160 POLR1D-221ENST00000637180 2262 ntTSL 5 BASIC9.62□□□□□ -0.87
HSPG2P98160 KRT8P4-201ENST00000509735 1454 ntBASIC9.62□□□□□ -0.87
HSPG2P98160 TTLL3-209ENST00000426895 2767 ntAPPRIS P2 TSL 2 BASIC9.62□□□□□ -0.87
HSPG2P98160 RNPS1-203ENST00000397086 2069 ntAPPRIS P1 TSL 1 (best) BASIC9.62□□□□□ -0.87
HSPG2P98160 BX276092.9-202ENST00000636096 1722 ntAPPRIS P5 TSL 5 BASIC9.62□□□□□ -0.87
HSPG2P98160 TLE6-202ENST00000452088 1883 ntAPPRIS P3 TSL 1 (best) BASIC9.62□□□□□ -0.87
HSPG2P98160 AL136309.1-201ENST00000403917 691 ntBASIC9.62□□□□□ -0.87
HSPG2P98160 ZMYND10-AS1-201ENST00000440013 250 ntTSL 3 BASIC9.62□□□□□ -0.87
HSPG2P98160 IL1R2-203ENST00000441002 1106 ntTSL 1 (best) BASIC9.62□□□□□ -0.87
HSPG2P98160 KCNK16-205ENST00000507712 889 ntTSL 3 BASIC9.62□□□□□ -0.87
HSPG2P98160 FAM32A-204ENST00000588367 798 ntTSL 2 BASIC9.62□□□□□ -0.87
HSPG2P98160 AC005779.2-201ENST00000593083 550 ntAPPRIS P1 TSL 4 BASIC9.62□□□□□ -0.87
HSPG2P98160 HSD17B6-205ENST00000554643 1751 ntAPPRIS P1 TSL 5 BASIC9.62□□□□□ -0.87
HSPG2P98160 RNF167-211ENST00000575111 1757 ntAPPRIS P3 TSL 1 (best) BASIC9.62□□□□□ -0.87
HSPG2P98160 AP003356.1-202ENST00000517910 2770 ntTSL 2 BASIC9.62□□□□□ -0.87
HSPG2P98160 METTL6-201ENST00000383789 1413 ntTSL 2 BASIC9.62□□□□□ -0.87
HSPG2P98160 NFYA-202ENST00000353205 1660 ntTSL 5 BASIC9.62□□□□□ -0.87
HSPG2P98160 PJA1-202ENST00000374571 2672 ntAPPRIS ALT2 TSL 1 (best) BASIC9.62□□□□□ -0.87
HSPG2P98160 ADORA1-202ENST00000337894 2919 ntAPPRIS P1 TSL 2 BASIC9.62□□□□□ -0.87
HSPG2P98160 ANKRD6-201ENST00000339746 3073 ntAPPRIS ALT1 TSL 1 (best) BASIC9.62□□□□□ -0.87
HSPG2P98160 TBRG4-203ENST00000395655 2225 ntTSL 2 BASIC9.62□□□□□ -0.87
HSPG2P98160 CRELD1-201ENST00000326434 1994 ntTSL 1 (best) BASIC9.62□□□□□ -0.87
HSPG2P98160 RCHY1-202ENST00000380840 1735 ntTSL 1 (best) BASIC9.62□□□□□ -0.87
HSPG2P98160 WRAP53-210ENST00000534050 1736 ntTSL 1 (best) BASIC9.62□□□□□ -0.87
HSPG2P98160 LINC02537-201ENST00000635943 1367 ntTSL 4 BASIC9.61□□□□□ -0.87
HSPG2P98160 KCNC2-203ENST00000393288 2485 ntAPPRIS ALT2 TSL 1 (best) BASIC9.61□□□□□ -0.87
HSPG2P98160 TPM1-202ENST00000288398 1295 ntTSL 1 (best) BASIC9.61□□□□□ -0.87
HSPG2P98160 PBDC1-201ENST00000373357 977 ntTSL 2 BASIC9.61□□□□□ -0.87
HSPG2P98160 AC098934.1-204ENST00000430114 631 ntTSL 1 (best) BASIC9.61□□□□□ -0.87
HSPG2P98160 Metazoa_SRP.100-201ENST00000447610 282 ntBASIC9.61□□□□□ -0.87
HSPG2P98160 CHCHD7-211ENST00000521831 573 ntTSL 2 BASIC9.61□□□□□ -0.87
HSPG2P98160 PTPA-204ENST00000355007 2515 ntTSL 5 BASIC9.61□□□□□ -0.87
HSPG2P98160 ALOX12-AS1-201ENST00000399540 1730 ntTSL 2 BASIC9.61□□□□□ -0.87
HSPG2P98160 SPDYE2B-203ENST00000507450 1742 ntAPPRIS P2 TSL 2 BASIC9.61□□□□□ -0.87
HSPG2P98160 SPDYE2-203ENST00000507918 1742 ntAPPRIS P2 TSL 2 BASIC9.61□□□□□ -0.87
HSPG2P98160 FOXD4L6-201ENST00000622588 2034 ntAPPRIS P1 BASIC9.61□□□□□ -0.87
HSPG2P98160 GPN3-201ENST00000228827 1468 ntAPPRIS P1 TSL 1 (best) BASIC9.61□□□□□ -0.87
HSPG2P98160 GOLGA2-213ENST00000610329 2212 ntTSL 2 BASIC9.61□□□□□ -0.87
HSPG2P98160 BRMS1-202ENST00000425825 1363 ntTSL 5 BASIC9.61□□□□□ -0.87
HSPG2P98160 CBFB-202ENST00000412916 2971 ntAPPRIS ALT1 TSL 1 (best) BASIC9.61□□□□□ -0.87
HSPG2P98160 ZNF750-202ENST00000572562 1513 ntTSL 2 BASIC9.61□□□□□ -0.87
HSPG2P98160 TAB1-202ENST00000331454 1660 ntTSL 1 (best) BASIC9.61□□□□□ -0.87
HSPG2P98160 ARHGAP28-203ENST00000383472 2295 ntAPPRIS ALT2 TSL 5 BASIC9.61□□□□□ -0.87
HSPG2P98160 NAGK-201ENST00000244204 1154 ntAPPRIS P5 TSL 1 (best) BASIC9.61□□□□□ -0.87
HSPG2P98160 HS3ST2-201ENST00000261374 2314 ntAPPRIS P1 TSL 1 (best) BASIC9.61□□□□□ -0.87
HSPG2P98160 WDR54-201ENST00000348227 1147 ntAPPRIS P1 TSL 1 (best) BASIC9.61□□□□□ -0.87
HSPG2P98160 ACTBP7-201ENST00000418351 1124 ntBASIC9.61□□□□□ -0.87
HSPG2P98160 PRR30-202ENST00000432962 1440 ntAPPRIS ALT2 TSL 3 BASIC9.61□□□□□ -0.87
HSPG2P98160 AL139412.1-202ENST00000452465 675 ntTSL 3 BASIC9.61□□□□□ -0.87
HSPG2P98160 TAF6-211ENST00000453269 2464 ntAPPRIS P1 TSL 1 (best) BASIC9.61□□□□□ -0.87
HSPG2P98160 PIGT-207ENST00000543458 2037 ntTSL 2 BASIC9.61□□□□□ -0.87
HSPG2P98160 NFIC-204ENST00000586919 1221 ntTSL 5 BASIC9.61□□□□□ -0.87
HSPG2P98160 ATP6AP2-226ENST00000637526 1862 ntAPPRIS ALT2 TSL 5 BASIC9.61□□□□□ -0.87
HSPG2P98160 SYTL3-202ENST00000360448 2504 ntAPPRIS ALT1 TSL 5 BASIC9.61□□□□□ -0.87
Retrieved 100 of 98,524 protein–RNA pairs in 41.1 ms