Protein–RNA interactions for Protein: P55283

CDH4, Cadherin-4, humanhuman

Predictions only

Length 916 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
CDH4P55283 RAB30-AS1-207ENST00000533708 825 ntTSL 2 BASIC16.3■□□□□ 0.2
CDH4P55283 AC138466.1-201ENST00000535242 391 ntTSL 3 BASIC16.3■□□□□ 0.2
CDH4P55283 RAB26-202ENST00000541451 944 ntTSL 1 (best) BASIC16.3■□□□□ 0.2
CDH4P55283 FKBP11-208ENST00000550765 1030 ntAPPRIS P3 TSL 1 (best) BASIC16.3■□□□□ 0.2
CDH4P55283 AC104794.3-201ENST00000566840 1248 ntBASIC16.3■□□□□ 0.2
CDH4P55283 YPEL2-205ENST00000585166 881 ntAPPRIS P1 TSL 5 BASIC16.3■□□□□ 0.2
CDH4P55283 SRD5A3P1-201ENST00000603021 949 ntBASIC16.3■□□□□ 0.2
CDH4P55283 YTHDF3-AS1-201ENST00000603538 718 ntBASIC16.3■□□□□ 0.2
CDH4P55283 BARD1-209ENST00000613192 703 ntTSL 1 (best) BASIC16.3■□□□□ 0.2
CDH4P55283 MALAT1-213ENST00000618227 593 ntTSL 3 BASIC16.3■□□□□ 0.2
CDH4P55283 CREB3L2-208ENST00000620715 1053 ntTSL 5 BASIC16.3■□□□□ 0.2
CDH4P55283 CELF4-221ENST00000601019 1836 ntAPPRIS ALT1 TSL 5 BASIC16.3■□□□□ 0.2
CDH4P55283 PRSS54-204ENST00000567164 1799 ntAPPRIS P1 TSL 1 (best) BASIC16.3■□□□□ 0.2
CDH4P55283 EDN3-205ENST00000395654 2318 ntAPPRIS ALT2 TSL 1 (best) BASIC16.3■□□□□ 0.2
CDH4P55283 BACE2-203ENST00000347667 8764 ntTSL 1 (best) BASIC16.3■□□□□ 0.2
CDH4P55283 MPP3-201ENST00000398389 2182 ntAPPRIS P1 TSL 1 (best) BASIC16.3■□□□□ 0.2
CDH4P55283 FAM215B-201ENST00000458392 2183 ntTSL 1 (best) BASIC16.3■□□□□ 0.2
CDH4P55283 SNHG22-201ENST00000589499 1615 ntTSL 2 BASIC16.3■□□□□ 0.2
CDH4P55283 MANSC1-202ENST00000535902 5831 ntAPPRIS P1 TSL 1 (best) BASIC16.3■□□□□ 0.2
CDH4P55283 SYBU-231ENST00000533065 2645 ntAPPRIS ALT2 TSL 2 BASIC16.3■□□□□ 0.2
CDH4P55283 POLG2-201ENST00000539111 1564 ntAPPRIS P1 TSL 1 (best) BASIC16.3■□□□□ 0.2
CDH4P55283 DBNDD1-202ENST00000304733 2081 ntTSL 1 (best) BASIC16.3■□□□□ 0.2
CDH4P55283 FBXO18-201ENST00000362091 3560 ntAPPRIS P1 TSL 1 (best) BASIC16.3■□□□□ 0.2
CDH4P55283 AC012414.7-201ENST00000621235 1507 ntTSL 1 (best) BASIC16.29■□□□□ 0.2
CDH4P55283 CTSB-228ENST00000533455 2009 ntAPPRIS P1 TSL 1 (best) BASIC16.29■□□□□ 0.2
CDH4P55283 ZCCHC3-201ENST00000500893 3354 ntAPPRIS P1 BASIC16.29■□□□□ 0.2
CDH4P55283 CELF6-201ENST00000287202 3345 ntAPPRIS P3 TSL 1 (best) BASIC16.29■□□□□ 0.2
CDH4P55283 HOXD3-201ENST00000249440 2303 ntAPPRIS P1 TSL 1 (best) BASIC16.29■□□□□ 0.2
CDH4P55283 RASGRP2-201ENST00000354024 2310 ntAPPRIS P2 TSL 1 (best) BASIC16.29■□□□□ 0.2
CDH4P55283 ITGA9-201ENST00000264741 7889 ntAPPRIS P1 TSL 1 (best) BASIC16.29■□□□□ 0.2
CDH4P55283 SLC45A1-202ENST00000471889 2784 ntTSL 5 BASIC16.29■□□□□ 0.2
CDH4P55283 AL136309.2-201ENST00000427049 2277 ntTSL 2 BASIC16.29■□□□□ 0.2
CDH4P55283 HS3ST3B1-201ENST00000360954 5367 ntAPPRIS P1 TSL 1 (best) BASIC16.29■□□□□ 0.2
CDH4P55283 POU4F2-201ENST00000281321 3144 ntAPPRIS P1 TSL 1 (best) BASIC16.29■□□□□ 0.2
CDH4P55283 AL158154.2-201ENST00000585776 2208 ntTSL 2 BASIC16.29■□□□□ 0.2
CDH4P55283 SPATA21-205ENST00000540400 1773 ntAPPRIS ALT2 TSL 1 (best) BASIC16.29■□□□□ 0.2
CDH4P55283 ALOX12-AS1-201ENST00000399540 1730 ntTSL 2 BASIC16.29■□□□□ 0.2
CDH4P55283 PNKD-202ENST00000258362 2991 ntAPPRIS ALT2 TSL 1 (best) BASIC16.29■□□□□ 0.2
CDH4P55283 RAC2-202ENST00000401529 569 ntTSL 4 BASIC16.29■□□□□ 0.2
CDH4P55283 FAM221A-202ENST00000409192 888 ntTSL 1 (best) BASIC16.29■□□□□ 0.2
CDH4P55283 ZMYND10-AS1-201ENST00000440013 250 ntTSL 3 BASIC16.29■□□□□ 0.2
CDH4P55283 DZIP1L-204ENST00000469243 2107 ntAPPRIS ALT2 TSL 2 BASIC16.29■□□□□ 0.2
CDH4P55283 SLC35B4-204ENST00000470969 1033 ntTSL 1 (best) BASIC16.29■□□□□ 0.2
CDH4P55283 MLF1-206ENST00000471745 1266 ntTSL 2 BASIC16.29■□□□□ 0.2
CDH4P55283 AL160313.1-201ENST00000502101 1039 ntTSL 1 (best) BASIC16.29■□□□□ 0.2
CDH4P55283 TIMM17BP1-201ENST00000545713 516 ntBASIC16.29■□□□□ 0.2
CDH4P55283 AC092337.1-201ENST00000568699 1129 ntBASIC16.29■□□□□ 0.2
CDH4P55283 ZNF586-205ENST00000598885 578 ntTSL 4 BASIC16.29■□□□□ 0.2
CDH4P55283 KRT76-201ENST00000332411 2529 ntAPPRIS P1 TSL 1 (best) BASIC16.29■□□□□ 0.2
CDH4P55283 DMAC2-201ENST00000221943 1692 ntAPPRIS P1 TSL 2 BASIC16.29■□□□□ 0.2
CDH4P55283 LAT2-204ENST00000398475 2453 ntAPPRIS P2 TSL 1 (best) BASIC16.29■□□□□ 0.2
CDH4P55283 CLN3-201ENST00000333496 1608 ntTSL 5 BASIC16.29■□□□□ 0.2
CDH4P55283 KDM5C-202ENST00000375379 5245 ntAPPRIS ALT2 TSL 5 BASIC16.29■□□□□ 0.2
CDH4P55283 CERNA1-202ENST00000560518 1972 ntTSL 2 BASIC16.29■□□□□ 0.2
CDH4P55283 CTCF-201ENST00000264010 3939 ntAPPRIS P1 TSL 1 (best) BASIC16.29■□□□□ 0.2
CDH4P55283 C2orf54-202ENST00000388934 1911 ntAPPRIS P4 TSL 2 BASIC16.29■□□□□ 0.2
CDH4P55283 SLC44A1-203ENST00000374724 3088 ntAPPRIS ALT1 TSL 5 BASIC16.29■□□□□ 0.2
CDH4P55283 LTA-214ENST00000454783 1507 ntAPPRIS P1 TSL 2 BASIC16.29■□□□□ 0.2
CDH4P55283 PDE6G-204ENST00000573076 1505 ntTSL 1 (best) BASIC16.29■□□□□ 0.2
CDH4P55283 MAP2K7-202ENST00000397981 3430 ntTSL 1 (best) BASIC16.29■□□□□ 0.2
CDH4P55283 MCM4-201ENST00000262105 4183 ntAPPRIS P1 TSL 1 (best) BASIC16.29■□□□□ 0.2
CDH4P55283 TMTC2-201ENST00000321196 5681 ntAPPRIS P1 TSL 1 (best) BASIC16.29■□□□□ 0.2
CDH4P55283 ACSM1-204ENST00000520010 1894 ntAPPRIS P1 TSL 1 (best) BASIC16.29■□□□□ 0.2
CDH4P55283 CLEC18A-209ENST00000615430 2215 ntAPPRIS P2 TSL 5 BASIC16.29■□□□□ 0.2
CDH4P55283 CLEC18C-211ENST00000618957 2215 ntAPPRIS P2 TSL 5 BASIC16.29■□□□□ 0.2
CDH4P55283 CLEC18B-205ENST00000619275 2215 ntAPPRIS ALT2 TSL 5 BASIC16.29■□□□□ 0.2
CDH4P55283 ZNF418-208ENST00000599852 2501 ntTSL 2 BASIC16.28■□□□□ 0.2
CDH4P55283 ZMYND12-201ENST00000372565 1775 ntAPPRIS P1 TSL 1 (best) BASIC16.28■□□□□ 0.2
CDH4P55283 NFIC-202ENST00000395111 1755 ntTSL 2 BASIC16.28■□□□□ 0.2
CDH4P55283 TRIM46-209ENST00000543729 1703 ntTSL 5 BASIC16.28■□□□□ 0.2
CDH4P55283 FLII-221ENST00000578558 2377 ntTSL 5 BASIC16.28■□□□□ 0.2
CDH4P55283 SMIM25-203ENST00000425497 2010 ntTSL 1 (best) BASIC16.28■□□□□ 0.2
CDH4P55283 CDC42BPG-201ENST00000342711 5742 ntAPPRIS P1 TSL 1 (best) BASIC16.28■□□□□ 0.2
CDH4P55283 NFE2L3-201ENST00000056233 3686 ntAPPRIS P1 TSL 1 (best) BASIC16.28■□□□□ 0.2
CDH4P55283 PRPS2-203ENST00000398491 1348 ntAPPRIS ALT1 TSL 1 (best) BASIC16.28■□□□□ 0.2
CDH4P55283 CLN8-205ENST00000520991 1305 ntTSL 5 BASIC16.28■□□□□ 0.2
CDH4P55283 LAMC1-201ENST00000258341 7889 ntAPPRIS P1 TSL 1 (best) BASIC16.28■□□□□ 0.2
CDH4P55283 CPEB2-203ENST00000382395 5524 ntAPPRIS ALT2 TSL 1 (best) BASIC16.28■□□□□ 0.2
CDH4P55283 AP001781.3-201ENST00000622211 2939 ntAPPRIS P1 TSL 2 BASIC16.28■□□□□ 0.2
CDH4P55283 FLYWCH2-201ENST00000293981 915 ntAPPRIS P2 TSL 3 BASIC16.28■□□□□ 0.2
CDH4P55283 CIDEA-201ENST00000320477 828 ntAPPRIS P1 TSL 1 (best) BASIC16.28■□□□□ 0.2
CDH4P55283 SLC9A7-201ENST00000328306 3838 ntAPPRIS P3 TSL 1 (best) BASIC16.28■□□□□ 0.2
CDH4P55283 AC074338.1-201ENST00000416825 156 ntBASIC16.28■□□□□ 0.2
CDH4P55283 LEPROTL1-202ENST00000442880 908 ntTSL 2 BASIC16.28■□□□□ 0.2
CDH4P55283 SPDYE18-201ENST00000510091 1050 ntBASIC16.28■□□□□ 0.2
CDH4P55283 AC106795.3-201ENST00000511650 547 ntTSL 4 BASIC16.28■□□□□ 0.2
CDH4P55283 DOC2GP-202ENST00000514950 1163 ntBASIC16.28■□□□□ 0.2
CDH4P55283 RNASEK-C17orf49-201ENST00000547302 900 ntAPPRIS P1 TSL 5 BASIC16.28■□□□□ 0.2
CDH4P55283 ZNF226-211ENST00000588742 447 ntTSL 1 (best) BASIC16.28■□□□□ 0.2
CDH4P55283 AC004233.3-201ENST00000607794 1269 ntBASIC16.28■□□□□ 0.2
CDH4P55283 HIST1H3D-202ENST00000635200 948 ntAPPRIS P1 TSL 3 BASIC16.28■□□□□ 0.2
CDH4P55283 NFIC-201ENST00000341919 1573 ntTSL 1 (best) BASIC16.28■□□□□ 0.2
CDH4P55283 TDRD6-203ENST00000544460 8887 ntAPPRIS ALT2 TSL 2 BASIC16.28■□□□□ 0.2
CDH4P55283 AC006974.1-201ENST00000637928 1501 ntTSL 5 BASIC16.28■□□□□ 0.2
CDH4P55283 PLEKHB1-202ENST00000354190 2380 ntAPPRIS P4 TSL 1 (best) BASIC16.28■□□□□ 0.2
CDH4P55283 RAP1GDS1-203ENST00000380158 2085 ntTSL 1 (best) BASIC16.28■□□□□ 0.2
CDH4P55283 MYLK3-202ENST00000536476 1795 ntAPPRIS ALT2 TSL 2 BASIC16.28■□□□□ 0.2
CDH4P55283 BMP1-201ENST00000306349 2626 ntTSL 1 (best) BASIC16.28■□□□□ 0.2
CDH4P55283 UGCG-201ENST00000374279 4007 ntAPPRIS P1 TSL 1 (best) BASIC16.28■□□□□ 0.2
CDH4P55283 PPP1R18-206ENST00000615892 1448 ntTSL 1 (best) BASIC16.28■□□□□ 0.2
Retrieved 100 of 98,524 protein–RNA pairs in 57.6 ms