Protein–RNA interactions for Protein: P28370

SMARCA1, Probable global transcription activator SNF2L1, humanhuman

Predictions only

Length 1,054 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
SMARCA1P28370 SPATS2L-202ENST00000360760 2119 ntTSL 1 (best) BASIC18.23■□□□□ 0.51
SMARCA1P28370 OSBPL6-203ENST00000357080 2217 ntTSL 1 (best) BASIC18.23■□□□□ 0.51
SMARCA1P28370 AC012485.3-201ENST00000637634 2424 ntTSL 5 BASIC18.23■□□□□ 0.51
SMARCA1P28370 RNF112-201ENST00000461366 3212 ntAPPRIS P1 TSL 1 (best) BASIC18.23■□□□□ 0.51
SMARCA1P28370 SQLE-201ENST00000265896 2961 ntAPPRIS P1 TSL 1 (best) BASIC18.23■□□□□ 0.51
SMARCA1P28370 CARS-203ENST00000397111 2685 ntTSL 1 (best) BASIC18.23■□□□□ 0.51
SMARCA1P28370 NR4A3-202ENST00000338488 2588 ntTSL 1 (best) BASIC18.23■□□□□ 0.51
SMARCA1P28370 LUC7L3-202ENST00000393227 2284 ntTSL 1 (best) BASIC18.23■□□□□ 0.51
SMARCA1P28370 LFNG-205ENST00000402506 2268 ntTSL 2 BASIC18.23■□□□□ 0.51
SMARCA1P28370 BECN1-213ENST00000590099 2087 ntAPPRIS P1 TSL 1 (best) BASIC18.23■□□□□ 0.51
SMARCA1P28370 HARS2-206ENST00000508522 1562 ntTSL 2 BASIC18.23■□□□□ 0.51
SMARCA1P28370 SPATS1-201ENST00000288390 1354 ntAPPRIS P2 TSL 1 (best) BASIC18.23■□□□□ 0.51
SMARCA1P28370 SYCE1-202ENST00000343131 1113 ntAPPRIS ALT2 TSL 1 (best) BASIC18.23■□□□□ 0.51
SMARCA1P28370 KRTAP6-3-201ENST00000391624 636 ntAPPRIS P1 BASIC18.23■□□□□ 0.51
SMARCA1P28370 AL133267.1-201ENST00000398220 340 ntBASIC18.23■□□□□ 0.51
SMARCA1P28370 LINC01067-201ENST00000432575 664 ntTSL 3 BASIC18.23■□□□□ 0.51
SMARCA1P28370 MOGAT3-203ENST00000440203 1219 ntAPPRIS ALT2 TSL 2 BASIC18.23■□□□□ 0.51
SMARCA1P28370 GNAQP1-201ENST00000444815 1067 ntBASIC18.23■□□□□ 0.51
SMARCA1P28370 NDUFAF2-203ENST00000511107 586 ntTSL 1 (best) BASIC18.23■□□□□ 0.51
SMARCA1P28370 AC106795.3-201ENST00000511650 547 ntTSL 4 BASIC18.23■□□□□ 0.51
SMARCA1P28370 RCHY1-210ENST00000513257 759 ntTSL 1 (best) BASIC18.23■□□□□ 0.51
SMARCA1P28370 TPRX2P-201ENST00000535362 881 ntBASIC18.23■□□□□ 0.51
SMARCA1P28370 POLD4-211ENST00000539074 714 ntTSL 3 BASIC18.23■□□□□ 0.51
SMARCA1P28370 LINC02356-202ENST00000552663 314 ntTSL 3 BASIC18.23■□□□□ 0.51
SMARCA1P28370 TUBB3-203ENST00000553967 736 ntTSL 2 BASIC18.23■□□□□ 0.51
SMARCA1P28370 AC023310.3-201ENST00000557027 670 ntBASIC18.23■□□□□ 0.51
SMARCA1P28370 AC100756.1-201ENST00000562736 682 ntBASIC18.23■□□□□ 0.51
SMARCA1P28370 AC138749.3-201ENST00000567691 622 ntBASIC18.23■□□□□ 0.51
SMARCA1P28370 AC026471.2-201ENST00000569782 655 ntTSL 2 BASIC18.23■□□□□ 0.51
SMARCA1P28370 AC079336.2-201ENST00000578408 927 ntTSL 3 BASIC18.23■□□□□ 0.51
SMARCA1P28370 AC004233.3-201ENST00000607794 1269 ntBASIC18.23■□□□□ 0.51
SMARCA1P28370 AC116165.1-201ENST00000611806 668 ntBASIC18.23■□□□□ 0.51
SMARCA1P28370 PPP1R21-206ENST00000449090 3049 ntTSL 1 (best) BASIC18.23■□□□□ 0.51
SMARCA1P28370 LRRFIP2-205ENST00000421276 2522 ntTSL 2 BASIC18.23■□□□□ 0.51
SMARCA1P28370 TBC1D2B-201ENST00000300584 6067 ntAPPRIS ALT2 TSL 5 BASIC18.23■□□□□ 0.51
SMARCA1P28370 TJP2-202ENST00000377245 4611 ntAPPRIS P4 TSL 1 (best) BASIC18.23■□□□□ 0.51
SMARCA1P28370 SALL4-203ENST00000395997 1918 ntTSL 1 (best) BASIC18.23■□□□□ 0.51
SMARCA1P28370 FGF11-201ENST00000293829 3063 ntAPPRIS P1 TSL 1 (best) BASIC18.23■□□□□ 0.51
SMARCA1P28370 UBL7-209ENST00000567435 1720 ntAPPRIS P1 TSL 1 (best) BASIC18.23■□□□□ 0.51
SMARCA1P28370 PABPC4-203ENST00000372858 2753 ntTSL 1 (best) BASIC18.23■□□□□ 0.51
SMARCA1P28370 AMT-233ENST00000636522 1620 ntTSL 2 BASIC18.23■□□□□ 0.51
SMARCA1P28370 C21orf33-202ENST00000348499 1506 ntTSL 1 (best) BASIC18.23■□□□□ 0.51
SMARCA1P28370 C5orf24-204ENST00000504727 2923 ntTSL 1 (best) BASIC18.22■□□□□ 0.51
SMARCA1P28370 TKT-202ENST00000423516 2075 ntTSL 2 BASIC18.22■□□□□ 0.51
SMARCA1P28370 CXADR-201ENST00000284878 6254 ntAPPRIS P3 TSL 1 (best) BASIC18.22■□□□□ 0.51
SMARCA1P28370 GLDC-201ENST00000321612 3900 ntAPPRIS P1 TSL 1 (best) BASIC18.22■□□□□ 0.51
SMARCA1P28370 FOXP1-218ENST00000498215 2400 ntAPPRIS P3 TSL 2 BASIC18.22■□□□□ 0.51
SMARCA1P28370 FRA10AC1-201ENST00000359204 3089 ntAPPRIS P1 TSL 1 (best) BASIC18.22■□□□□ 0.51
SMARCA1P28370 GATAD2A-202ENST00000360315 5671 ntAPPRIS P3 TSL 5 BASIC18.22■□□□□ 0.51
SMARCA1P28370 PTPRF-209ENST00000438120 6377 ntAPPRIS P1 TSL 1 (best) BASIC18.22■□□□□ 0.51
SMARCA1P28370 CACFD1-201ENST00000291722 2688 ntTSL 2 BASIC18.22■□□□□ 0.51
SMARCA1P28370 AL355493.2-201ENST00000568270 1395 ntTSL 1 (best) BASIC18.22■□□□□ 0.51
SMARCA1P28370 GPR61-206ENST00000616874 2459 ntAPPRIS P1 TSL 2 BASIC18.22■□□□□ 0.51
SMARCA1P28370 TMEM65-201ENST00000297632 9029 ntAPPRIS P1 TSL 1 (best) BASIC18.22■□□□□ 0.51
SMARCA1P28370 GPR176-205ENST00000561100 2816 ntAPPRIS P1 TSL 1 (best) BASIC18.22■□□□□ 0.51
SMARCA1P28370 PKIG-203ENST00000372887 769 ntTSL 3 BASIC18.22■□□□□ 0.51
SMARCA1P28370 FAM159B-201ENST00000389074 847 ntAPPRIS P1 TSL 2 BASIC18.22■□□□□ 0.51
SMARCA1P28370 TMEM26-AS1-201ENST00000389640 863 ntTSL 5 BASIC18.22■□□□□ 0.51
SMARCA1P28370 CCL25-203ENST00000390669 924 ntAPPRIS P3 TSL 1 (best) BASIC18.22■□□□□ 0.51
SMARCA1P28370 FAM221A-202ENST00000409192 888 ntTSL 1 (best) BASIC18.22■□□□□ 0.51
SMARCA1P28370 AC087499.6-201ENST00000411576 835 ntBASIC18.22■□□□□ 0.51
SMARCA1P28370 AL161785.3-201ENST00000435157 395 ntTSL 3 BASIC18.22■□□□□ 0.51
SMARCA1P28370 AC009163.1-201ENST00000530512 573 ntTSL 4 BASIC18.22■□□□□ 0.51
SMARCA1P28370 AC055876.2-201ENST00000531834 546 ntBASIC18.22■□□□□ 0.51
SMARCA1P28370 API5-211ENST00000534695 560 ntTSL 5 BASIC18.22■□□□□ 0.51
SMARCA1P28370 AL391261.2-201ENST00000554907 773 ntTSL 2 BASIC18.22■□□□□ 0.51
SMARCA1P28370 AL096870.1-201ENST00000555591 930 ntAPPRIS P1 TSL 4 BASIC18.22■□□□□ 0.51
SMARCA1P28370 ZNF324B-203ENST00000594214 564 ntTSL 2 BASIC18.22■□□□□ 0.51
SMARCA1P28370 AC000095.1-201ENST00000603208 874 ntBASIC18.22■□□□□ 0.51
SMARCA1P28370 DUSP13-214ENST00000607131 1019 ntAPPRIS P3 TSL 1 (best) BASIC18.22■□□□□ 0.51
SMARCA1P28370 NTRK1-202ENST00000368196 2701 ntAPPRIS ALT2 TSL 1 (best) BASIC18.22■□□□□ 0.51
SMARCA1P28370 TNIP1-217ENST00000523200 1743 ntTSL 1 (best) BASIC18.22■□□□□ 0.51
SMARCA1P28370 MYB-205ENST00000367814 3302 ntAPPRIS P3 TSL 1 (best) BASIC18.22■□□□□ 0.51
SMARCA1P28370 LINC00942-201ENST00000515614 2417 ntTSL 5 BASIC18.22■□□□□ 0.51
SMARCA1P28370 TUBA3E-201ENST00000312988 1542 ntAPPRIS P1 TSL 1 (best) BASIC18.22■□□□□ 0.51
SMARCA1P28370 SLC45A1-202ENST00000471889 2784 ntTSL 5 BASIC18.22■□□□□ 0.51
SMARCA1P28370 LAD1-201ENST00000367313 2336 ntTSL 1 (best) BASIC18.22■□□□□ 0.51
SMARCA1P28370 LLGL2-201ENST00000167462 3480 ntTSL 1 (best) BASIC18.22■□□□□ 0.51
SMARCA1P28370 RNF103-201ENST00000237455 3477 ntAPPRIS P1 TSL 1 (best) BASIC18.22■□□□□ 0.51
SMARCA1P28370 EIF4A1-201ENST00000293831 1756 ntAPPRIS P1 TSL 1 (best) BASIC18.22■□□□□ 0.51
SMARCA1P28370 ZNF574-202ENST00000359044 2940 ntAPPRIS P1 TSL 1 (best) BASIC18.22■□□□□ 0.51
SMARCA1P28370 PSME3-202ENST00000441946 2944 ntTSL 2 BASIC18.22■□□□□ 0.51
SMARCA1P28370 MTX3-201ENST00000509852 1655 ntTSL 1 (best) BASIC18.22■□□□□ 0.51
SMARCA1P28370 COLQ-206ENST00000603808 1668 ntAPPRIS ALT1 TSL 1 (best) BASIC18.22■□□□□ 0.51
SMARCA1P28370 SLC37A4-217ENST00000545985 2606 ntAPPRIS P1 TSL 5 BASIC18.21■□□□□ 0.51
SMARCA1P28370 SGCB-201ENST00000381431 4431 ntAPPRIS P1 TSL 1 (best) BASIC18.21■□□□□ 0.51
SMARCA1P28370 CYP2AB1P-202ENST00000454440 1456 ntBASIC18.21■□□□□ 0.51
SMARCA1P28370 KLC4-202ENST00000347162 2404 ntAPPRIS ALT2 TSL 1 (best) BASIC18.21■□□□□ 0.51
SMARCA1P28370 VGLL2-202ENST00000352536 1709 ntTSL 1 (best) BASIC18.21■□□□□ 0.51
SMARCA1P28370 REPS1-201ENST00000258062 3161 ntAPPRIS P3 TSL 1 (best) BASIC18.21■□□□□ 0.51
SMARCA1P28370 ZFP91-201ENST00000316059 5220 ntAPPRIS P1 TSL 1 (best) BASIC18.21■□□□□ 0.51
SMARCA1P28370 TGFB1I1-203ENST00000394863 1898 ntAPPRIS ALT1 TSL 1 (best) BASIC18.21■□□□□ 0.51
SMARCA1P28370 GOLIM4-201ENST00000309027 2100 ntTSL 1 (best) BASIC18.21■□□□□ 0.51
SMARCA1P28370 STMN1-201ENST00000357865 1137 ntAPPRIS P1 TSL 2 BASIC18.21■□□□□ 0.51
SMARCA1P28370 LCE1E-201ENST00000368770 1180 ntAPPRIS P2 TSL 1 (best) BASIC18.21■□□□□ 0.51
SMARCA1P28370 RTN4RL2-202ENST00000395120 582 ntTSL 1 (best) BASIC18.21■□□□□ 0.51
SMARCA1P28370 OSM-203ENST00000403463 464 ntTSL 3 BASIC18.21■□□□□ 0.51
SMARCA1P28370 TMEM176B-202ENST00000429904 1206 ntAPPRIS P1 TSL 2 BASIC18.21■□□□□ 0.51
SMARCA1P28370 AC147067.1-201ENST00000466692 579 ntTSL 2 BASIC18.21■□□□□ 0.51
SMARCA1P28370 AC106772.1-201ENST00000506629 591 ntTSL 3 BASIC18.21■□□□□ 0.51
Retrieved 100 of 98,524 protein–RNA pairs in 38.6 ms