Protein–RNA interactions for Protein: P27658

COL8A1, Collagen alpha-1(VIII) chain, humanhuman

Predictions only

Length 744 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
COL8A1P27658 CLEC18C-201ENST00000314151 1934 ntAPPRIS P2 TSL 1 (best) BASIC13.94□□□□□ -0.18
COL8A1P27658 CLEC18A-208ENST00000568461 1934 ntAPPRIS P2 TSL 1 (best) BASIC13.94□□□□□ -0.18
COL8A1P27658 ZBTB44-201ENST00000357899 2781 ntAPPRIS ALT2 TSL 1 (best) BASIC13.94□□□□□ -0.18
COL8A1P27658 POC1A-203ENST00000474012 1760 ntAPPRIS ALT2 TSL 2 BASIC13.94□□□□□ -0.18
COL8A1P27658 KLHDC3-203ENST00000332245 1494 ntTSL 2 BASIC13.93□□□□□ -0.18
COL8A1P27658 MSI2-201ENST00000284073 6364 ntAPPRIS P4 TSL 1 (best) BASIC13.93□□□□□ -0.18
COL8A1P27658 ARHGAP39-202ENST00000377307 4673 ntAPPRIS P3 TSL 5 BASIC13.93□□□□□ -0.18
COL8A1P27658 AC092978.1-201ENST00000474979 1309 ntTSL 5 BASIC13.93□□□□□ -0.18
COL8A1P27658 AC092978.1-202ENST00000637590 1327 ntBASIC13.93□□□□□ -0.18
COL8A1P27658 ZNF302-201ENST00000423823 2590 ntAPPRIS P3 TSL 1 (best) BASIC13.93□□□□□ -0.18
COL8A1P27658 GLG1-201ENST00000205061 8261 ntAPPRIS P3 TSL 1 (best) BASIC13.93□□□□□ -0.18
COL8A1P27658 OBSL1-201ENST00000289656 2274 ntTSL 5 BASIC13.93□□□□□ -0.18
COL8A1P27658 DDX1-207ENST00000617198 2257 ntTSL 1 (best) BASIC13.93□□□□□ -0.18
COL8A1P27658 NEO1-206ENST00000558964 4441 ntAPPRIS ALT2 TSL 1 (best) BASIC13.93□□□□□ -0.18
COL8A1P27658 AHSA1-201ENST00000216479 1402 ntAPPRIS P1 TSL 1 (best) BASIC13.93□□□□□ -0.18
COL8A1P27658 RBM17-201ENST00000379888 2755 ntAPPRIS P1 TSL 1 (best) BASIC13.93□□□□□ -0.18
COL8A1P27658 AVPR1B-201ENST00000367126 2237 ntAPPRIS P1 TSL 1 (best) BASIC13.93□□□□□ -0.18
COL8A1P27658 CAMTA1-201ENST00000303635 8444 ntAPPRIS P1 TSL 1 (best) BASIC13.93□□□□□ -0.18
COL8A1P27658 B9D1-202ENST00000268841 755 ntTSL 1 (best) BASIC13.93□□□□□ -0.18
COL8A1P27658 RNASE10-201ENST00000328444 717 ntAPPRIS P1 BASIC13.93□□□□□ -0.18
COL8A1P27658 KRTAP1-4-201ENST00000377747 408 ntAPPRIS P1 BASIC13.93□□□□□ -0.18
COL8A1P27658 AC018467.1-201ENST00000421581 717 ntTSL 5 BASIC13.93□□□□□ -0.18
COL8A1P27658 AC134915.1-201ENST00000426461 574 ntBASIC13.93□□□□□ -0.18
COL8A1P27658 U82695.1-202ENST00000428676 700 ntTSL 2 BASIC13.93□□□□□ -0.18
COL8A1P27658 BAALC-AS2-201ENST00000436771 496 ntTSL 1 (best) BASIC13.93□□□□□ -0.18
COL8A1P27658 CGB8-201ENST00000448456 882 ntAPPRIS P1 TSL 1 (best) BASIC13.93□□□□□ -0.18
COL8A1P27658 AL358393.1-201ENST00000456771 532 ntTSL 2 BASIC13.93□□□□□ -0.18
COL8A1P27658 SCARNA20.5-201ENST00000516991 142 ntBASIC13.93□□□□□ -0.18
COL8A1P27658 EVX1-AS-202ENST00000519050 576 ntTSL 4 BASIC13.93□□□□□ -0.18
COL8A1P27658 RNASEK-C17orf49-201ENST00000547302 900 ntAPPRIS P1 TSL 5 BASIC13.93□□□□□ -0.18
COL8A1P27658 KRT90P-201ENST00000549264 1064 ntBASIC13.93□□□□□ -0.18
COL8A1P27658 AL390726.5-201ENST00000562942 871 ntTSL 2 BASIC13.93□□□□□ -0.18
COL8A1P27658 AC009133.1-202ENST00000563806 494 ntTSL 3 BASIC13.93□□□□□ -0.18
COL8A1P27658 AC020763.1-201ENST00000567186 551 ntTSL 4 BASIC13.93□□□□□ -0.18
COL8A1P27658 MIR4741-201ENST00000579822 90 ntBASIC13.93□□□□□ -0.18
COL8A1P27658 FAAP24-204ENST00000590179 784 ntTSL 2 BASIC13.93□□□□□ -0.18
COL8A1P27658 TUBB6-213ENST00000591909 1017 ntTSL 1 (best) BASIC13.93□□□□□ -0.18
COL8A1P27658 BRI3BPP1-201ENST00000594224 787 ntBASIC13.93□□□□□ -0.18
COL8A1P27658 KLK3-211ENST00000597483 810 ntTSL 2 BASIC13.93□□□□□ -0.18
COL8A1P27658 COPS9-205ENST00000607357 418 ntAPPRIS P1 TSL 1 (best) BASIC13.93□□□□□ -0.18
COL8A1P27658 PAPD5-202ENST00000436909 4635 ntAPPRIS P1 TSL 2 BASIC13.93□□□□□ -0.18
COL8A1P27658 CHRDL1-204ENST00000444321 1658 ntAPPRIS ALT1 TSL 1 (best) BASIC13.93□□□□□ -0.18
COL8A1P27658 CCDC62-201ENST00000253079 3546 ntAPPRIS P2 TSL 1 (best) BASIC13.93□□□□□ -0.18
COL8A1P27658 NTRK2-205ENST00000376208 8178 ntTSL 1 (best) BASIC13.93□□□□□ -0.18
COL8A1P27658 KAT8-201ENST00000219797 1525 ntAPPRIS P1 TSL 1 (best) BASIC13.93□□□□□ -0.18
COL8A1P27658 KIFC3-203ENST00000445690 3379 ntAPPRIS ALT2 TSL 1 (best) BASIC13.93□□□□□ -0.18
COL8A1P27658 ARHGAP22-206ENST00000435790 2595 ntAPPRIS ALT2 TSL 2 BASIC13.93□□□□□ -0.18
COL8A1P27658 RASA2-202ENST00000452898 2562 ntAPPRIS ALT2 TSL 5 BASIC13.93□□□□□ -0.18
COL8A1P27658 MFSD2A-202ENST00000372811 2154 ntAPPRIS P1 TSL 1 (best) BASIC13.93□□□□□ -0.18
COL8A1P27658 PITPNM2-209ENST00000546049 1793 ntTSL 5 BASIC13.93□□□□□ -0.18
COL8A1P27658 USE1-206ENST00000595101 1776 ntTSL 2 BASIC13.93□□□□□ -0.18
COL8A1P27658 JMJD4-207ENST00000620518 2432 ntAPPRIS P1 TSL 1 (best) BASIC13.93□□□□□ -0.18
COL8A1P27658 TBCEL-205ENST00000529397 1375 ntAPPRIS P1 TSL 1 (best) BASIC13.93□□□□□ -0.18
COL8A1P27658 SFRP2-201ENST00000274063 2032 ntAPPRIS P1 TSL 1 (best) BASIC13.93□□□□□ -0.18
COL8A1P27658 RGS7-203ENST00000366564 2295 ntAPPRIS ALT2 TSL 1 (best) BASIC13.93□□□□□ -0.18
COL8A1P27658 CEP78-204ENST00000415759 2623 ntAPPRIS ALT2 TSL 5 BASIC13.93□□□□□ -0.18
COL8A1P27658 PHYH-202ENST00000396913 1732 ntTSL 5 BASIC13.93□□□□□ -0.18
COL8A1P27658 DNAH14-206ENST00000400952 1984 ntTSL 1 (best) BASIC13.92□□□□□ -0.18
COL8A1P27658 SLCO5A1-201ENST00000260126 9076 ntAPPRIS P1 TSL 1 (best) BASIC13.92□□□□□ -0.18
COL8A1P27658 ST8SIA5-201ENST00000315087 2716 ntAPPRIS P1 TSL 1 (best) BASIC13.92□□□□□ -0.18
COL8A1P27658 SLC30A1-201ENST00000367001 5474 ntAPPRIS P1 TSL 1 (best) BASIC13.92□□□□□ -0.18
COL8A1P27658 SCNN1D-201ENST00000325425 2679 ntAPPRIS ALT2 TSL 1 (best) BASIC13.92□□□□□ -0.18
COL8A1P27658 BPIFB4-201ENST00000375483 2159 ntAPPRIS P1 TSL 5 BASIC13.92□□□□□ -0.18
COL8A1P27658 ZNF589-203ENST00000427617 1677 ntTSL 2 BASIC13.92□□□□□ -0.18
COL8A1P27658 COPS3-212ENST00000539941 1699 ntTSL 2 BASIC13.92□□□□□ -0.18
COL8A1P27658 HARS-202ENST00000415192 1401 ntTSL 2 BASIC13.92□□□□□ -0.18
COL8A1P27658 EN2-201ENST00000297375 3395 ntAPPRIS P1 TSL 1 (best) BASIC13.92□□□□□ -0.18
COL8A1P27658 FERMT2-203ENST00000395631 3369 ntAPPRIS P1 TSL 1 (best) BASIC13.92□□□□□ -0.18
COL8A1P27658 RPS3-201ENST00000278572 907 ntTSL 3 BASIC13.92□□□□□ -0.18
COL8A1P27658 KLC2-201ENST00000316924 2990 ntAPPRIS P1 TSL 1 (best) BASIC13.92□□□□□ -0.18
COL8A1P27658 SCGN-201ENST00000334979 704 ntTSL 1 (best) BASIC13.92□□□□□ -0.18
COL8A1P27658 TSC2-202ENST00000350773 5532 ntAPPRIS ALT2 TSL 1 (best) BASIC13.92□□□□□ -0.18
COL8A1P27658 SPAG11A-203ENST00000351436 534 ntTSL 1 (best) BASIC13.92□□□□□ -0.18
COL8A1P27658 SPAG11B-204ENST00000361111 534 ntTSL 1 (best) BASIC13.92□□□□□ -0.18
COL8A1P27658 MEAF6-202ENST00000373073 603 ntTSL 3 BASIC13.92□□□□□ -0.18
COL8A1P27658 MIR33B-201ENST00000385104 96 ntBASIC13.92□□□□□ -0.18
COL8A1P27658 MTATP6P19-201ENST00000413797 659 ntBASIC13.92□□□□□ -0.18
COL8A1P27658 LARGE-AS1-202ENST00000424291 1065 ntTSL 1 (best) BASIC13.92□□□□□ -0.18
COL8A1P27658 AL157902.1-202ENST00000425010 763 ntTSL 3 BASIC13.92□□□□□ -0.18
COL8A1P27658 RFPL4A-201ENST00000434937 1035 ntAPPRIS P1 TSL 5 BASIC13.92□□□□□ -0.18
COL8A1P27658 SNHG11-212ENST00000449351 954 ntTSL 5 BASIC13.92□□□□□ -0.18
COL8A1P27658 Z93015.1-201ENST00000451718 390 ntBASIC13.92□□□□□ -0.18
COL8A1P27658 KBTBD4-203ENST00000525720 980 ntTSL 3 BASIC13.92□□□□□ -0.18
COL8A1P27658 AC007406.3-201ENST00000537295 1063 ntTSL 2 BASIC13.92□□□□□ -0.18
COL8A1P27658 ENPP7P5-201ENST00000541031 1031 ntBASIC13.92□□□□□ -0.18
COL8A1P27658 PXN-AS1-204ENST00000542265 854 ntTSL 2 BASIC13.92□□□□□ -0.18
COL8A1P27658 VASH1-AS1-201ENST00000554058 871 ntTSL 3 BASIC13.92□□□□□ -0.18
COL8A1P27658 CHMP4BP1-201ENST00000556017 588 ntBASIC13.92□□□□□ -0.18
COL8A1P27658 AIPL1-204ENST00000570466 1196 ntTSL 1 (best) BASIC13.92□□□□□ -0.18
COL8A1P27658 CLUHP6-201ENST00000580789 941 ntBASIC13.92□□□□□ -0.18
COL8A1P27658 AC105105.3-201ENST00000585470 646 ntTSL 5 BASIC13.92□□□□□ -0.18
COL8A1P27658 CABP1-204ENST00000453000 1857 ntTSL 1 (best) BASIC13.92□□□□□ -0.18
COL8A1P27658 LSR-212ENST00000602122 2480 ntAPPRIS ALT2 TSL 2 BASIC13.92□□□□□ -0.18
COL8A1P27658 GCLM-201ENST00000370238 4857 ntAPPRIS P1 TSL 1 (best) BASIC13.92□□□□□ -0.18
COL8A1P27658 FLJ16779-201ENST00000612722 7638 ntBASIC13.92□□□□□ -0.18
COL8A1P27658 RHOF-201ENST00000267205 3009 ntAPPRIS P1 TSL 1 (best) BASIC13.92□□□□□ -0.18
COL8A1P27658 TAGLN3-202ENST00000393917 1488 ntAPPRIS P1 TSL 5 BASIC13.92□□□□□ -0.18
COL8A1P27658 AC138028.6-201ENST00000616106 1482 ntBASIC13.92□□□□□ -0.18
COL8A1P27658 HOOK2-202ENST00000397668 2513 ntTSL 1 (best) BASIC13.92□□□□□ -0.18
COL8A1P27658 FAM181B-201ENST00000329203 3924 ntAPPRIS P1 BASIC13.92□□□□□ -0.18
Retrieved 100 of 98,524 protein–RNA pairs in 40 ms