Protein–RNA interactions for Protein: P23560

BDNF, Brain-derived neurotrophic factor, humanhuman

Predictions only

Length 247 aa.

Download Table  
Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
BDNFP23560 MRPL55-202ENST00000336300 722 ntAPPRIS P1 TSL 2 BASIC16.82■□□□□ 0.28
BDNFP23560 MRPL55-206ENST00000366732 722 ntTSL 3 BASIC16.82■□□□□ 0.28
BDNFP23560 CUTA-202ENST00000374496 762 ntAPPRIS P3 TSL 5 BASIC16.82■□□□□ 0.28
BDNFP23560 MAP9-202ENST00000379248 1165 ntTSL 1 (best) BASIC16.82■□□□□ 0.28
BDNFP23560 RNASEH1-AS1-202ENST00000438436 1218 ntTSL 1 (best) BASIC16.82■□□□□ 0.28
BDNFP23560 FYCO1-203ENST00000438446 1072 ntTSL 5 BASIC16.82■□□□□ 0.28
BDNFP23560 TARDBPP1-201ENST00000442013 1203 ntBASIC16.82■□□□□ 0.28
BDNFP23560 CD81-207ENST00000481687 890 ntTSL 2 BASIC16.82■□□□□ 0.28
BDNFP23560 IL32-211ENST00000525643 1272 ntAPPRIS P4 TSL 1 (best) BASIC16.82■□□□□ 0.28
BDNFP23560 IL32-213ENST00000528163 950 ntAPPRIS P4 TSL 2 BASIC16.82■□□□□ 0.28
BDNFP23560 API5-211ENST00000534695 560 ntTSL 5 BASIC16.82■□□□□ 0.28
BDNFP23560 TIMM17BP1-201ENST00000545713 516 ntBASIC16.82■□□□□ 0.28
BDNFP23560 IL32-231ENST00000551513 791 ntAPPRIS ALT2 TSL 3 BASIC16.82■□□□□ 0.28
BDNFP23560 AP3S2-204ENST00000558011 738 ntTSL 3 BASIC16.82■□□□□ 0.28
BDNFP23560 AC087612.1-201ENST00000560238 658 ntTSL 5 BASIC16.82■□□□□ 0.28
BDNFP23560 IFT20-209ENST00000579419 787 ntAPPRIS ALT1 TSL 3 BASIC16.82■□□□□ 0.28
BDNFP23560 YPEL2-205ENST00000585166 881 ntAPPRIS P1 TSL 5 BASIC16.82■□□□□ 0.28
BDNFP23560 AC005746.1-201ENST00000589244 672 ntTSL 3 BASIC16.82■□□□□ 0.28
BDNFP23560 DUSP13-214ENST00000607131 1019 ntAPPRIS P3 TSL 1 (best) BASIC16.82■□□□□ 0.28
BDNFP23560 Metazoa_SRP.112-201ENST00000613101 279 ntBASIC16.82■□□□□ 0.28
BDNFP23560 COL23A1-202ENST00000407622 2329 ntAPPRIS ALT2 TSL 5 BASIC16.82■□□□□ 0.28
BDNFP23560 SFRP1-201ENST00000220772 4492 ntAPPRIS P1 TSL 1 (best) BASIC16.82■□□□□ 0.28
BDNFP23560 MYO1D-201ENST00000318217 5563 ntAPPRIS P1 TSL 1 (best) BASIC16.82■□□□□ 0.28
BDNFP23560 AMN1-201ENST00000281471 2110 ntAPPRIS P1 TSL 1 (best) BASIC16.82■□□□□ 0.28
BDNFP23560 CLDND1-222ENST00000510545 2124 ntAPPRIS P1 TSL 5 BASIC16.82■□□□□ 0.28
BDNFP23560 AC008894.3-201ENST00000624324 3103 ntBASIC16.82■□□□□ 0.28
BDNFP23560 STK4-AS1-201ENST00000434401 2065 ntTSL 2 BASIC16.82■□□□□ 0.28
BDNFP23560 HSF5-201ENST00000323777 4094 ntAPPRIS P1 TSL 1 (best) BASIC16.82■□□□□ 0.28
BDNFP23560 FAM76B-201ENST00000358780 3952 ntAPPRIS P3 TSL 1 (best) BASIC16.82■□□□□ 0.28
BDNFP23560 CXXC1-201ENST00000285106 2936 ntAPPRIS P3 TSL 1 (best) BASIC16.82■□□□□ 0.28
BDNFP23560 C12orf29-201ENST00000356891 2919 ntAPPRIS P1 TSL 1 (best) BASIC16.82■□□□□ 0.28
BDNFP23560 KIAA0319L-201ENST00000325722 4789 ntAPPRIS P1 TSL 1 (best) BASIC16.82■□□□□ 0.28
BDNFP23560 MFSD4A-207ENST00000536357 1841 ntTSL 2 BASIC16.82■□□□□ 0.28
BDNFP23560 PRSS54-204ENST00000567164 1799 ntAPPRIS P1 TSL 1 (best) BASIC16.82■□□□□ 0.28
BDNFP23560 KRT27-201ENST00000301656 1612 ntAPPRIS P1 TSL 1 (best) BASIC16.81■□□□□ 0.28
BDNFP23560 C15orf62-201ENST00000344320 2370 ntAPPRIS P1 BASIC16.81■□□□□ 0.28
BDNFP23560 MBD1-207ENST00000398488 1512 ntTSL 1 (best) BASIC16.81■□□□□ 0.28
BDNFP23560 RASGRP2-206ENST00000377494 2983 ntAPPRIS ALT1 TSL 2 BASIC16.81■□□□□ 0.28
BDNFP23560 LRRFIP1P1-201ENST00000498774 2246 ntBASIC16.81■□□□□ 0.28
BDNFP23560 KDM4B-211ENST00000611640 5703 ntTSL 5 BASIC16.81■□□□□ 0.28
BDNFP23560 SLC8A2-201ENST00000236877 5234 ntAPPRIS P1 TSL 1 (best) BASIC16.81■□□□□ 0.28
BDNFP23560 LATS1-202ENST00000392273 2567 ntTSL 1 (best) BASIC16.81■□□□□ 0.28
BDNFP23560 RBX1-201ENST00000216225 1188 ntAPPRIS P1 TSL 1 (best) BASIC16.81■□□□□ 0.28
BDNFP23560 FTH1-201ENST00000273550 1229 ntAPPRIS P1 TSL 1 (best) BASIC16.81■□□□□ 0.28
BDNFP23560 AL353779.1-201ENST00000434793 351 ntBASIC16.81■□□□□ 0.28
BDNFP23560 PNKD-204ENST00000436005 978 ntTSL 5 BASIC16.81■□□□□ 0.28
BDNFP23560 AC009720.1-201ENST00000511867 586 ntTSL 2 BASIC16.81■□□□□ 0.28
BDNFP23560 SERF1B-208ENST00000515588 792 ntTSL 2 BASIC16.81■□□□□ 0.28
BDNFP23560 AP005018.1-201ENST00000525475 301 ntBASIC16.81■□□□□ 0.28
BDNFP23560 FTH1-202ENST00000526640 786 ntTSL 2 BASIC16.81■□□□□ 0.28
BDNFP23560 TPRX2P-201ENST00000535362 881 ntBASIC16.81■□□□□ 0.28
BDNFP23560 AC023310.3-201ENST00000557027 670 ntBASIC16.81■□□□□ 0.28
BDNFP23560 AL110118.2-203ENST00000557574 554 ntAPPRIS P1 TSL 4 BASIC16.81■□□□□ 0.28
BDNFP23560 AC100756.1-201ENST00000562736 682 ntBASIC16.81■□□□□ 0.28
BDNFP23560 AC133919.2-202ENST00000563515 416 ntTSL 3 BASIC16.81■□□□□ 0.28
BDNFP23560 AC138749.3-201ENST00000567691 622 ntBASIC16.81■□□□□ 0.28
BDNFP23560 ZNF586-205ENST00000598885 578 ntTSL 4 BASIC16.81■□□□□ 0.28
BDNFP23560 AC116165.1-201ENST00000611806 668 ntBASIC16.81■□□□□ 0.28
BDNFP23560 SMCHD1-201ENST00000320876 8821 ntAPPRIS P1 TSL 5 BASIC16.81■□□□□ 0.28
BDNFP23560 VILL-207ENST00000465644 1857 ntTSL 5 BASIC16.81■□□□□ 0.28
BDNFP23560 GPR158-AS1-201ENST00000449643 2433 ntTSL 2 BASIC16.81■□□□□ 0.28
BDNFP23560 SH2B1-203ENST00000359285 3033 ntTSL 1 (best) BASIC16.81■□□□□ 0.28
BDNFP23560 PPP1R15A-201ENST00000200453 2378 ntAPPRIS P1 TSL 1 (best) BASIC16.81■□□□□ 0.28
BDNFP23560 TMC3-AS1-203ENST00000559781 2195 ntTSL 3 BASIC16.81■□□□□ 0.28
BDNFP23560 PPHLN1-204ENST00000358314 1643 ntTSL 2 BASIC16.81■□□□□ 0.28
BDNFP23560 GATA6-201ENST00000269216 3770 ntAPPRIS P1 TSL 1 (best) BASIC16.81■□□□□ 0.28
BDNFP23560 LRRC58-201ENST00000295628 7903 ntAPPRIS P1 TSL 1 (best) BASIC16.81■□□□□ 0.28
BDNFP23560 HCLS1-202ENST00000428394 1560 ntTSL 2 BASIC16.81■□□□□ 0.28
BDNFP23560 NLGN2-201ENST00000302926 4642 ntAPPRIS P1 TSL 1 (best) BASIC16.81■□□□□ 0.28
BDNFP23560 BNC1-201ENST00000345382 4610 ntAPPRIS P3 TSL 1 (best) BASIC16.81■□□□□ 0.28
BDNFP23560 DHX30-205ENST00000445061 4065 ntAPPRIS P2 TSL 1 (best) BASIC16.81■□□□□ 0.28
BDNFP23560 IDH3B-201ENST00000380843 1545 ntAPPRIS P4 TSL 1 (best) BASIC16.8■□□□□ 0.28
BDNFP23560 CYP2T1P-202ENST00000641596 2535 ntBASIC16.8■□□□□ 0.28
BDNFP23560 MTCL1-205ENST00000517570 6009 ntAPPRIS ALT2 TSL 1 (best) BASIC16.8■□□□□ 0.28
BDNFP23560 PDCD2-208ENST00000541970 3378 ntAPPRIS P1 TSL 1 (best) BASIC16.8■□□□□ 0.28
BDNFP23560 DIMT1-201ENST00000199320 2859 ntAPPRIS P1 TSL 1 (best) BASIC16.8■□□□□ 0.28
BDNFP23560 KAZN-201ENST00000361144 3838 ntTSL 1 (best) BASIC16.8■□□□□ 0.28
BDNFP23560 ACTL9-201ENST00000324436 1426 ntAPPRIS P1 BASIC16.8■□□□□ 0.28
BDNFP23560 HFE2-205ENST00000497365 1419 ntTSL 1 (best) BASIC16.8■□□□□ 0.28
BDNFP23560 ACSM1-204ENST00000520010 1894 ntAPPRIS P1 TSL 1 (best) BASIC16.8■□□□□ 0.28
BDNFP23560 DGAT2-202ENST00000376262 2324 ntTSL 1 (best) BASIC16.8■□□□□ 0.28
BDNFP23560 TDH-201ENST00000525246 1357 ntTSL 1 (best) BASIC16.8■□□□□ 0.28
BDNFP23560 NR2C1-203ENST00000393101 1822 ntTSL 1 (best) BASIC16.8■□□□□ 0.28
BDNFP23560 LRRN4-201ENST00000378858 2692 ntAPPRIS P1 TSL 1 (best) BASIC16.8■□□□□ 0.28
BDNFP23560 SNRPD3-201ENST00000215829 1763 ntAPPRIS P1 TSL 1 (best) BASIC16.8■□□□□ 0.28
BDNFP23560 TANK-202ENST00000392749 2171 ntAPPRIS P1 TSL 1 (best) BASIC16.8■□□□□ 0.28
BDNFP23560 RAB40B-206ENST00000571995 3859 ntAPPRIS P1 TSL 1 (best) BASIC16.8■□□□□ 0.28
BDNFP23560 TSPAN4-201ENST00000346501 882 ntTSL 3 BASIC16.8■□□□□ 0.28
BDNFP23560 CCL25-203ENST00000390669 924 ntAPPRIS P3 TSL 1 (best) BASIC16.8■□□□□ 0.28
BDNFP23560 RTN4RL2-202ENST00000395120 582 ntTSL 1 (best) BASIC16.8■□□□□ 0.28
BDNFP23560 AC074338.1-201ENST00000416825 156 ntBASIC16.8■□□□□ 0.28
BDNFP23560 PABPN1L-202ENST00000419291 1272 ntAPPRIS P1 TSL 1 (best) BASIC16.8■□□□□ 0.28
BDNFP23560 LINC00351-201ENST00000424926 911 ntTSL 3 BASIC16.8■□□□□ 0.28
BDNFP23560 DFFBP1-201ENST00000433250 979 ntBASIC16.8■□□□□ 0.28
BDNFP23560 TMEM44-AS1-203ENST00000453671 1119 ntTSL 2 BASIC16.8■□□□□ 0.28
BDNFP23560 RAB30-AS1-207ENST00000533708 825 ntTSL 2 BASIC16.8■□□□□ 0.28
BDNFP23560 IL32-234ENST00000552936 713 ntAPPRIS ALT2 TSL 3 BASIC16.8■□□□□ 0.28
BDNFP23560 AL096870.1-201ENST00000555591 930 ntAPPRIS P1 TSL 4 BASIC16.8■□□□□ 0.28
BDNFP23560 AC092337.1-201ENST00000568699 1129 ntBASIC16.8■□□□□ 0.28
BDNFP23560 BLK-205ENST00000529894 2017 ntTSL 5 BASIC16.8■□□□□ 0.28
Retrieved 100 of 98,524 protein–RNA pairs in 31.8 ms