Protein–RNA interactions for Protein: P06340

HLA-DOA, HLA class II histocompatibility antigen, DO alpha chain, humanhuman

Predictions only

Length 250 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
HLA-DOAP06340 PQLC2L-201ENST00000312275 1201 ntAPPRIS ALT2 TSL 1 (best) BASIC18.74■□□□□ 0.59
HLA-DOAP06340 PHLDA2-201ENST00000314222 955 ntAPPRIS P1 TSL 1 (best) BASIC18.74■□□□□ 0.59
HLA-DOAP06340 NXT2-202ENST00000372103 1085 ntTSL 1 (best) BASIC18.74■□□□□ 0.59
HLA-DOAP06340 IFT20-203ENST00000395418 825 ntAPPRIS P4 TSL 1 (best) BASIC18.74■□□□□ 0.59
HLA-DOAP06340 AC105940.2-201ENST00000421055 380 ntTSL 3 BASIC18.74■□□□□ 0.59
HLA-DOAP06340 ACA64.2-201ENST00000459014 129 ntBASIC18.74■□□□□ 0.59
HLA-DOAP06340 PTPRG-AS1-205ENST00000475371 733 ntTSL 3 BASIC18.74■□□□□ 0.59
HLA-DOAP06340 AC122138.1-201ENST00000508799 646 ntTSL 2 BASIC18.74■□□□□ 0.59
HLA-DOAP06340 AC009686.1-201ENST00000522494 364 ntTSL 3 BASIC18.74■□□□□ 0.59
HLA-DOAP06340 AP001995.1-201ENST00000531784 1157 ntTSL 4 BASIC18.74■□□□□ 0.59
HLA-DOAP06340 TAPBPL-205ENST00000544021 772 ntTSL 3 BASIC18.74■□□□□ 0.59
HLA-DOAP06340 RAB43P1-201ENST00000561790 589 ntBASIC18.74■□□□□ 0.59
HLA-DOAP06340 AC129507.3-201ENST00000571512 913 ntTSL 2 BASIC18.74■□□□□ 0.59
HLA-DOAP06340 IFT20-216ENST00000588477 774 ntTSL 5 BASIC18.74■□□□□ 0.59
HLA-DOAP06340 APOC4-201ENST00000591600 348 ntTSL 3 BASIC18.74■□□□□ 0.59
HLA-DOAP06340 AC015936.2-201ENST00000593177 259 ntBASIC18.74■□□□□ 0.59
HLA-DOAP06340 MIR6752-201ENST00000618442 71 ntBASIC18.74■□□□□ 0.59
HLA-DOAP06340 AGAP1-213ENST00000619456 1057 ntTSL 5 BASIC18.74■□□□□ 0.59
HLA-DOAP06340 MXD1-201ENST00000264444 5587 ntAPPRIS P1 TSL 1 (best) BASIC18.74■□□□□ 0.59
HLA-DOAP06340 TSC22D1-AS1-201ENST00000616360 2845 ntTSL 1 (best) BASIC18.74■□□□□ 0.59
HLA-DOAP06340 OSGIN1-203ENST00000393306 1940 ntAPPRIS P1 TSL 1 (best) BASIC18.74■□□□□ 0.59
HLA-DOAP06340 UEVLD-203ENST00000379387 1848 ntTSL 2 BASIC18.74■□□□□ 0.59
HLA-DOAP06340 SP100-205ENST00000409824 1802 ntTSL 5 BASIC18.74■□□□□ 0.59
HLA-DOAP06340 INTS4P1-202ENST00000587624 2985 ntTSL 5 BASIC18.74■□□□□ 0.59
HLA-DOAP06340 IL11RA-202ENST00000441545 1700 ntAPPRIS P1 TSL 5 BASIC18.74■□□□□ 0.59
HLA-DOAP06340 ATG10-202ENST00000355178 1438 ntTSL 2 BASIC18.74■□□□□ 0.59
HLA-DOAP06340 PPFIA3-201ENST00000334186 4733 ntAPPRIS P1 TSL 1 (best) BASIC18.74■□□□□ 0.59
HLA-DOAP06340 LMBR1-202ENST00000359422 4727 ntTSL 5 BASIC18.74■□□□□ 0.59
HLA-DOAP06340 SHISA5-210ENST00000444115 2081 ntTSL 2 BASIC18.73■□□□□ 0.59
HLA-DOAP06340 PTPN18-201ENST00000175756 3669 ntAPPRIS P1 TSL 1 (best) BASIC18.73■□□□□ 0.59
HLA-DOAP06340 AC069281.2-201ENST00000485071 4401 ntTSL 2 BASIC18.73■□□□□ 0.59
HLA-DOAP06340 TRIML1-201ENST00000332517 1797 ntAPPRIS P1 TSL 1 (best) BASIC18.73■□□□□ 0.59
HLA-DOAP06340 AL034550.2-201ENST00000620523 1771 ntTSL 2 BASIC18.73■□□□□ 0.59
HLA-DOAP06340 KLK3-202ENST00000360617 1664 ntTSL 1 (best) BASIC18.73■□□□□ 0.59
HLA-DOAP06340 TBL2-205ENST00000432538 1573 ntTSL 2 BASIC18.73■□□□□ 0.59
HLA-DOAP06340 HARS2-206ENST00000508522 1562 ntTSL 2 BASIC18.73■□□□□ 0.59
HLA-DOAP06340 C1RL-210ENST00000544702 1569 ntTSL 1 (best) BASIC18.73■□□□□ 0.59
HLA-DOAP06340 GOLIM4-201ENST00000309027 2100 ntTSL 1 (best) BASIC18.73■□□□□ 0.59
HLA-DOAP06340 CPA1-201ENST00000011292 1487 ntAPPRIS P1 TSL 1 (best) BASIC18.73■□□□□ 0.59
HLA-DOAP06340 SEMA3B-213ENST00000618865 2925 ntAPPRIS P3 TSL 5 BASIC18.73■□□□□ 0.59
HLA-DOAP06340 ARHGAP22-205ENST00000417912 2352 ntTSL 1 (best) BASIC18.73■□□□□ 0.59
HLA-DOAP06340 ZNF385A-212ENST00000551109 2369 ntTSL 5 BASIC18.73■□□□□ 0.59
HLA-DOAP06340 BUD31-201ENST00000222969 1035 ntAPPRIS P1 TSL 1 (best) BASIC18.73■□□□□ 0.59
HLA-DOAP06340 LDLRAD1-201ENST00000371360 785 ntAPPRIS P3 TSL 1 (best) BASIC18.73■□□□□ 0.59
HLA-DOAP06340 AC112492.5-201ENST00000421897 457 ntBASIC18.73■□□□□ 0.59
HLA-DOAP06340 TMEM14DP-201ENST00000422205 345 ntBASIC18.73■□□□□ 0.59
HLA-DOAP06340 AL162726.2-201ENST00000438986 1017 ntBASIC18.73■□□□□ 0.59
HLA-DOAP06340 DUSP13-205ENST00000464872 684 ntTSL 3 BASIC18.73■□□□□ 0.59
HLA-DOAP06340 RPL13AP25-201ENST00000484130 612 ntBASIC18.73■□□□□ 0.59
HLA-DOAP06340 LITAF-218ENST00000576036 603 ntAPPRIS P1 TSL 4 BASIC18.73■□□□□ 0.59
HLA-DOAP06340 TUBB6-203ENST00000586653 788 ntTSL 2 BASIC18.73■□□□□ 0.59
HLA-DOAP06340 ZNF83-215ENST00000600714 810 ntTSL 3 BASIC18.73■□□□□ 0.59
HLA-DOAP06340 AC097359.3-201ENST00000603982 1210 ntBASIC18.73■□□□□ 0.59
HLA-DOAP06340 DUSP13-212ENST00000605915 1015 ntTSL 5 BASIC18.73■□□□□ 0.59
HLA-DOAP06340 ZNF619-205ENST00000456778 2192 ntTSL 2 BASIC18.73■□□□□ 0.59
HLA-DOAP06340 BLCAP-201ENST00000373537 2073 ntAPPRIS P1 TSL 1 (best) BASIC18.73■□□□□ 0.59
HLA-DOAP06340 TLK2-203ENST00000346027 3449 ntAPPRIS P3 TSL 1 (best) BASIC18.73■□□□□ 0.59
HLA-DOAP06340 MYH14-203ENST00000425460 6811 ntAPPRIS P3 TSL 5 BASIC18.73■□□□□ 0.59
HLA-DOAP06340 BMP3-201ENST00000282701 5734 ntAPPRIS P1 TSL 1 (best) BASIC18.73■□□□□ 0.59
HLA-DOAP06340 AC079328.2-201ENST00000561241 3354 ntBASIC18.73■□□□□ 0.59
HLA-DOAP06340 SLC10A3-202ENST00000369649 1763 ntAPPRIS ALT2 TSL 1 (best) BASIC18.73■□□□□ 0.59
HLA-DOAP06340 STX3-201ENST00000337979 3299 ntAPPRIS P1 TSL 1 (best) BASIC18.73■□□□□ 0.59
HLA-DOAP06340 AGFG1-202ENST00000373671 1669 ntTSL 1 (best) BASIC18.73■□□□□ 0.59
HLA-DOAP06340 ATP2C1-218ENST00000510168 5067 ntAPPRIS ALT1 TSL 5 BASIC18.72■□□□□ 0.59
HLA-DOAP06340 AL607033.1-201ENST00000623900 1599 ntBASIC18.72■□□□□ 0.59
HLA-DOAP06340 EPM2A-201ENST00000367519 3465 ntAPPRIS P1 TSL 1 (best) BASIC18.72■□□□□ 0.59
HLA-DOAP06340 ZBTB44-201ENST00000357899 2781 ntAPPRIS ALT2 TSL 1 (best) BASIC18.72■□□□□ 0.59
HLA-DOAP06340 ZNF346-202ENST00000503039 2774 ntTSL 2 BASIC18.72■□□□□ 0.59
HLA-DOAP06340 AP2A2-201ENST00000332231 4656 ntAPPRIS ALT1 TSL 1 (best) BASIC18.72■□□□□ 0.59
HLA-DOAP06340 STK4-AS1-201ENST00000434401 2065 ntTSL 2 BASIC18.72■□□□□ 0.59
HLA-DOAP06340 SNAP47-AS1-201ENST00000413347 1708 ntTSL 2 BASIC18.72■□□□□ 0.59
HLA-DOAP06340 SART1-201ENST00000312397 3293 ntAPPRIS P1 TSL 1 (best) BASIC18.72■□□□□ 0.59
HLA-DOAP06340 RASGRF1-202ENST00000419573 6294 ntTSL 2 BASIC18.72■□□□□ 0.59
HLA-DOAP06340 ATP6AP2-215ENST00000636409 1962 ntAPPRIS ALT2 TSL 2 BASIC18.72■□□□□ 0.59
HLA-DOAP06340 SMPD1-201ENST00000342245 2452 ntAPPRIS ALT1 TSL 1 (best) BASIC18.72■□□□□ 0.59
HLA-DOAP06340 IL32-202ENST00000325568 1105 ntAPPRIS P4 TSL 1 (best) BASIC18.72■□□□□ 0.59
HLA-DOAP06340 CLCNKB-201ENST00000375667 2129 ntTSL 2 BASIC18.72■□□□□ 0.59
HLA-DOAP06340 IL32-203ENST00000382213 880 ntAPPRIS ALT2 TSL 3 BASIC18.72■□□□□ 0.59
HLA-DOAP06340 AC079776.1-201ENST00000401540 1152 ntBASIC18.72■□□□□ 0.59
HLA-DOAP06340 SYNGR1-205ENST00000406293 564 ntTSL 2 BASIC18.72■□□□□ 0.59
HLA-DOAP06340 CGB8-201ENST00000448456 882 ntAPPRIS P1 TSL 1 (best) BASIC18.72■□□□□ 0.59
HLA-DOAP06340 TVP23B-202ENST00000476139 2989 ntTSL 1 (best) BASIC18.72■□□□□ 0.59
HLA-DOAP06340 SNHG6-201ENST00000520348 648 ntTSL 2 BASIC18.72■□□□□ 0.59
HLA-DOAP06340 MRPL52-216ENST00000557221 922 ntTSL 2 BASIC18.72■□□□□ 0.59
HLA-DOAP06340 AC108134.3-202ENST00000571404 1207 ntTSL 5 BASIC18.72■□□□□ 0.59
HLA-DOAP06340 AC129926.1-201ENST00000581944 614 ntTSL 2 BASIC18.72■□□□□ 0.59
HLA-DOAP06340 C17orf62-239ENST00000585080 741 ntAPPRIS P1 TSL 5 BASIC18.72■□□□□ 0.59
HLA-DOAP06340 BRI3BPP1-201ENST00000594224 787 ntBASIC18.72■□□□□ 0.59
HLA-DOAP06340 AC010319.3-201ENST00000597028 470 ntBASIC18.72■□□□□ 0.59
HLA-DOAP06340 ETV7-201ENST00000339796 1530 ntAPPRIS ALT2 TSL 1 (best) BASIC18.72■□□□□ 0.59
HLA-DOAP06340 SGSH-203ENST00000570923 1546 ntTSL 2 BASIC18.72■□□□□ 0.59
HLA-DOAP06340 UBA6-AS1-201ENST00000498917 1445 ntTSL 1 (best) BASIC18.72■□□□□ 0.59
HLA-DOAP06340 KRT8P22-201ENST00000562317 1415 ntBASIC18.72■□□□□ 0.59
HLA-DOAP06340 CCT7-216ENST00000540468 1674 ntTSL 2 BASIC18.72■□□□□ 0.59
HLA-DOAP06340 AKTIP-202ENST00000394657 2426 ntAPPRIS P3 TSL 2 BASIC18.72■□□□□ 0.59
HLA-DOAP06340 ZNF74-202ENST00000400451 3159 ntAPPRIS P2 TSL 1 (best) BASIC18.72■□□□□ 0.59
HLA-DOAP06340 CCDC184-201ENST00000316554 2343 ntAPPRIS P1 BASIC18.72■□□□□ 0.59
HLA-DOAP06340 SOX14-201ENST00000306087 2055 ntAPPRIS P1 BASIC18.72■□□□□ 0.59
HLA-DOAP06340 DZIP1-203ENST00000361396 7418 ntAPPRIS ALT2 TSL 1 (best) BASIC18.72■□□□□ 0.59
HLA-DOAP06340 CRYZL1-202ENST00000361534 2224 ntTSL 1 (best) BASIC18.72■□□□□ 0.59
Retrieved 100 of 98,524 protein–RNA pairs in 46.4 ms