Protein–RNA interactions for Protein: P01130

LDLR, Low-density lipoprotein receptor, humanhuman

Predictions only

Length 860 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
LDLRP01130 PTHLH-203ENST00000395872 1318 ntAPPRIS ALT1 TSL 5 BASIC15.56■□□□□ 0.08
LDLRP01130 EPB41L3-206ENST00000544123 3972 ntAPPRIS ALT2 TSL 2 BASIC15.56■□□□□ 0.08
LDLRP01130 IQCE-203ENST00000402050 6844 ntAPPRIS P3 TSL 1 (best) BASIC15.56■□□□□ 0.08
LDLRP01130 BCAT2-209ENST00000599246 1449 ntTSL 1 (best) BASIC15.56■□□□□ 0.08
LDLRP01130 PSMD6-210ENST00000492933 1495 ntTSL 1 (best) BASIC15.56■□□□□ 0.08
LDLRP01130 GPER1-204ENST00000401670 1542 ntAPPRIS P1 TSL 2 BASIC15.56■□□□□ 0.08
LDLRP01130 LCMT2-202ENST00000567039 1545 ntTSL 2 BASIC15.56■□□□□ 0.08
LDLRP01130 ZNF451-201ENST00000357489 4998 ntAPPRIS P3 TSL 1 (best) BASIC15.56■□□□□ 0.08
LDLRP01130 GRHPR-212ENST00000607784 1704 ntTSL 5 BASIC15.56■□□□□ 0.08
LDLRP01130 HIST1H2BN-204ENST00000612898 1723 ntAPPRIS P1 BASIC15.56■□□□□ 0.08
LDLRP01130 COBL-203ENST00000395542 5339 ntTSL 1 (best) BASIC15.56■□□□□ 0.08
LDLRP01130 HARS-204ENST00000438307 1789 ntTSL 2 BASIC15.56■□□□□ 0.08
LDLRP01130 SNX33P1-201ENST00000592116 1762 ntBASIC15.56■□□□□ 0.08
LDLRP01130 CABP1-204ENST00000453000 1857 ntTSL 1 (best) BASIC15.56■□□□□ 0.08
LDLRP01130 FBXL12-208ENST00000589626 1920 ntTSL 2 BASIC15.56■□□□□ 0.08
LDLRP01130 MBD1-210ENST00000457839 2473 ntAPPRIS ALT2 TSL 2 BASIC15.56■□□□□ 0.08
LDLRP01130 KIF18B-203ENST00000590129 2569 ntAPPRIS ALT2 TSL 1 (best) BASIC15.56■□□□□ 0.08
LDLRP01130 COMP-203ENST00000542601 2707 ntTSL 1 (best) BASIC15.56■□□□□ 0.08
LDLRP01130 ZNF514-201ENST00000295208 3011 ntAPPRIS P1 TSL 1 (best) BASIC15.56■□□□□ 0.08
LDLRP01130 CDC25B-203ENST00000344256 3071 ntTSL 2 BASIC15.56■□□□□ 0.08
LDLRP01130 KIAA1211-206ENST00000541073 4117 ntAPPRIS ALT2 TSL 1 (best) BASIC15.56■□□□□ 0.08
LDLRP01130 AL161772.1-201ENST00000610494 4412 ntBASIC15.56■□□□□ 0.08
LDLRP01130 NEDD4-202ENST00000435532 5869 ntAPPRIS P1 TSL 1 (best) BASIC15.55■□□□□ 0.08
LDLRP01130 BCL2L11-219ENST00000619294 5132 ntTSL 5 BASIC15.55■□□□□ 0.08
LDLRP01130 PTPRO-202ENST00000348962 5061 ntTSL 1 (best) BASIC15.55■□□□□ 0.08
LDLRP01130 CTBP1-209ENST00000510568 4250 ntTSL 1 (best) BASIC15.55■□□□□ 0.08
LDLRP01130 MROH6-201ENST00000398882 3469 ntAPPRIS P2 TSL 5 BASIC15.55■□□□□ 0.08
LDLRP01130 WNT2-201ENST00000265441 2907 ntAPPRIS P1 TSL 1 (best) BASIC15.55■□□□□ 0.08
LDLRP01130 NUP88-207ENST00000573584 2916 ntAPPRIS P1 TSL 1 (best) BASIC15.55■□□□□ 0.08
LDLRP01130 NOTO-201ENST00000398468 2749 ntAPPRIS P1 TSL 2 BASIC15.55■□□□□ 0.08
LDLRP01130 TLE3-202ENST00000440567 2657 ntTSL 2 BASIC15.55■□□□□ 0.08
LDLRP01130 EHHADH-203ENST00000456310 2577 ntTSL 2 BASIC15.55■□□□□ 0.08
LDLRP01130 DMTN-206ENST00000443491 2415 ntAPPRIS P1 TSL 5 BASIC15.55■□□□□ 0.08
LDLRP01130 AC087164.1-202ENST00000583062 2158 ntTSL 1 (best) BASIC15.55■□□□□ 0.08
LDLRP01130 MAPK13-203ENST00000373766 6196 ntTSL 1 (best) BASIC15.55■□□□□ 0.08
LDLRP01130 NR2E3-204ENST00000621736 2032 ntTSL 2 BASIC15.55■□□□□ 0.08
LDLRP01130 MPL-201ENST00000372470 1908 ntAPPRIS P2 TSL 1 (best) BASIC15.55■□□□□ 0.08
LDLRP01130 EGR3-204ENST00000522910 1553 ntAPPRIS ALT1 TSL 2 BASIC15.55■□□□□ 0.08
LDLRP01130 GMPPA-202ENST00000341142 1524 ntAPPRIS P1 TSL 5 BASIC15.55■□□□□ 0.08
LDLRP01130 MAP7-207ENST00000616617 4326 ntAPPRIS ALT2 TSL 5 BASIC15.55■□□□□ 0.08
LDLRP01130 PDP1-201ENST00000297598 4272 ntAPPRIS P3 TSL 1 (best) BASIC15.55■□□□□ 0.08
LDLRP01130 BICD1-205ENST00000550207 1328 ntTSL 3 BASIC15.55■□□□□ 0.08
LDLRP01130 PRLH-201ENST00000165524 264 ntAPPRIS P1 TSL 1 (best) BASIC15.55■□□□□ 0.08
LDLRP01130 CKLF-203ENST00000351137 508 ntAPPRIS ALT2 TSL 1 (best) BASIC15.55■□□□□ 0.08
LDLRP01130 ARRB2-203ENST00000381488 1236 ntTSL 2 BASIC15.55■□□□□ 0.08
LDLRP01130 NFKBIB-202ENST00000392079 991 ntTSL 5 BASIC15.55■□□□□ 0.08
LDLRP01130 SNCA-205ENST00000394991 1290 ntAPPRIS P1 TSL 1 (best) BASIC15.55■□□□□ 0.08
LDLRP01130 CBR1-202ENST00000399191 838 ntTSL 3 BASIC15.55■□□□□ 0.08
LDLRP01130 AC015922.1-201ENST00000421102 1152 ntBASIC15.55■□□□□ 0.08
LDLRP01130 AL391650.1-205ENST00000433939 579 ntAPPRIS P1 TSL 3 BASIC15.55■□□□□ 0.08
LDLRP01130 RHOQP3-201ENST00000437982 621 ntBASIC15.55■□□□□ 0.08
LDLRP01130 AC109322.1-201ENST00000524499 1264 ntBASIC15.55■□□□□ 0.08
LDLRP01130 DDIAS-202ENST00000524921 607 ntAPPRIS ALT2 TSL 4 BASIC15.55■□□□□ 0.08
LDLRP01130 FSTL3-207ENST00000605925 748 ntTSL 4 BASIC15.55■□□□□ 0.08
LDLRP01130 AJ011932.1-201ENST00000621707 465 ntBASIC15.55■□□□□ 0.08
LDLRP01130 AC105339.1-204ENST00000636249 355 ntBASIC15.55■□□□□ 0.08
LDLRP01130 SLC44A2-203ENST00000586078 3784 ntTSL 5 BASIC15.55■□□□□ 0.08
LDLRP01130 TMED7-TICAM2-202ENST00000333314 3453 ntTSL 2 BASIC15.55■□□□□ 0.08
LDLRP01130 ANKMY1-207ENST00000403283 2874 ntTSL 1 (best) BASIC15.55■□□□□ 0.08
LDLRP01130 KIF21A-202ENST00000361961 6601 ntTSL 1 (best) BASIC15.55■□□□□ 0.08
LDLRP01130 APAF1-201ENST00000333991 4539 ntTSL 5 BASIC15.55■□□□□ 0.08
LDLRP01130 DTNB-228ENST00000496972 2328 ntTSL 2 BASIC15.55■□□□□ 0.08
LDLRP01130 WBP2-215ENST00000591399 2225 ntAPPRIS P2 TSL 5 BASIC15.55■□□□□ 0.08
LDLRP01130 AC023157.3-201ENST00000619086 2088 ntBASIC15.55■□□□□ 0.08
LDLRP01130 AIFM2-201ENST00000307864 3243 ntAPPRIS P1 TSL 1 (best) BASIC15.55■□□□□ 0.08
LDLRP01130 NFATC4-204ENST00000424781 5488 ntAPPRIS ALT2 TSL 1 (best) BASIC15.54■□□□□ 0.08
LDLRP01130 TSNARE1-205ENST00000520166 1742 ntAPPRIS ALT2 TSL 1 (best) BASIC15.54■□□□□ 0.08
LDLRP01130 SEMA3G-201ENST00000231721 4899 ntAPPRIS P1 TSL 1 (best) BASIC15.54■□□□□ 0.08
LDLRP01130 PDE8B-204ENST00000342343 2677 ntAPPRIS ALT2 TSL 1 (best) BASIC15.54■□□□□ 0.08
LDLRP01130 FAM57B-201ENST00000279389 1481 ntTSL 1 (best) BASIC15.54■□□□□ 0.08
LDLRP01130 SLC39A1-203ENST00000368621 2398 ntAPPRIS P1 TSL 2 BASIC15.54■□□□□ 0.08
LDLRP01130 RIMS3-201ENST00000372683 1408 ntAPPRIS P1 TSL 1 (best) BASIC15.54■□□□□ 0.08
LDLRP01130 EIF4G1-206ENST00000392537 5229 ntTSL 2 BASIC15.54■□□□□ 0.08
LDLRP01130 ACOX3-202ENST00000413009 2374 ntTSL 1 (best) BASIC15.54■□□□□ 0.08
LDLRP01130 AP000253.1-201ENST00000449339 2233 ntTSL 3 BASIC15.54■□□□□ 0.08
LDLRP01130 ESM1-201ENST00000381403 1326 ntTSL 1 (best) BASIC15.54■□□□□ 0.08
LDLRP01130 PDXDC1-204ENST00000455313 2183 ntTSL 2 BASIC15.54■□□□□ 0.08
LDLRP01130 METTL26-204ENST00000397665 558 ntTSL 2 BASIC15.54■□□□□ 0.08
LDLRP01130 XXYLT1-205ENST00000437101 2149 ntTSL 2 BASIC15.54■□□□□ 0.08
LDLRP01130 FAM86GP-201ENST00000448322 971 ntBASIC15.54■□□□□ 0.08
LDLRP01130 RNA5SP421-201ENST00000516864 134 ntBASIC15.54■□□□□ 0.08
LDLRP01130 POLD4-207ENST00000531239 584 ntTSL 2 BASIC15.54■□□□□ 0.08
LDLRP01130 HNRNPDL-206ENST00000602300 1291 ntAPPRIS ALT2 TSL 1 (best) BASIC15.54■□□□□ 0.08
LDLRP01130 TMEM265-201ENST00000615541 995 ntAPPRIS P1 TSL 1 (best) BASIC15.54■□□□□ 0.08
LDLRP01130 TMEM127-201ENST00000258439 6266 ntAPPRIS P1 TSL 1 (best) BASIC15.54■□□□□ 0.08
LDLRP01130 RBM14-201ENST00000310137 2828 ntAPPRIS P1 TSL 1 (best) BASIC15.54■□□□□ 0.08
LDLRP01130 GCFC2-201ENST00000321027 4440 ntAPPRIS P1 TSL 1 (best) BASIC15.54■□□□□ 0.08
LDLRP01130 FDFT1-224ENST00000618539 2660 ntAPPRIS P1 TSL 5 BASIC15.54■□□□□ 0.08
LDLRP01130 MEIS3-210ENST00000561096 1883 ntAPPRIS ALT2 TSL 2 BASIC15.54■□□□□ 0.08
LDLRP01130 OPA1-201ENST00000361150 6330 ntTSL 5 BASIC15.54■□□□□ 0.08
LDLRP01130 ARHGAP9-203ENST00000424809 2569 ntTSL 2 BASIC15.54■□□□□ 0.08
LDLRP01130 NANOS1-202ENST00000425699 4017 ntAPPRIS P2 BASIC15.54■□□□□ 0.08
LDLRP01130 CNKSR1-202ENST00000374253 2538 ntAPPRIS ALT2 TSL 1 (best) BASIC15.54■□□□□ 0.08
LDLRP01130 NAGK-208ENST00000455662 1778 ntTSL 1 (best) BASIC15.54■□□□□ 0.08
LDLRP01130 CCDC110-201ENST00000307588 2898 ntAPPRIS P3 TSL 1 (best) BASIC15.54■□□□□ 0.08
LDLRP01130 DGKZ-205ENST00000456247 3482 ntAPPRIS ALT2 TSL 1 (best) BASIC15.53■□□□□ 0.08
LDLRP01130 BFSP2-201ENST00000302334 1558 ntAPPRIS P1 TSL 1 (best) BASIC15.53■□□□□ 0.08
LDLRP01130 TBC1D1-203ENST00000402522 1567 ntTSL 2 BASIC15.53■□□□□ 0.08
LDLRP01130 PARVB-203ENST00000404989 1591 ntTSL 1 (best) BASIC15.53■□□□□ 0.08
LDLRP01130 PARVB-204ENST00000406477 1569 ntTSL 1 (best) BASIC15.53■□□□□ 0.08
Retrieved 100 of 98,524 protein–RNA pairs in 34.2 ms