Protein–RNA interactions for Protein: A8TX70

COL6A5, Collagen alpha-5(VI) chain, humanhuman

Predictions only

Length 2,615 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
COL6A5A8TX70 OR1J1-201ENST00000259357 969 ntAPPRIS P1 BASIC12.15□□□□□ -0.46
COL6A5A8TX70 AC003982.2-201ENST00000536933 365 ntTSL 3 BASIC12.15□□□□□ -0.46
COL6A5A8TX70 TPM1-223ENST00000560445 485 ntTSL 3 BASIC12.15□□□□□ -0.46
COL6A5A8TX70 AC005597.1-201ENST00000588092 420 ntTSL 3 BASIC12.15□□□□□ -0.46
COL6A5A8TX70 AC012044.1-201ENST00000603431 297 ntBASIC12.15□□□□□ -0.46
COL6A5A8TX70 ROPN1-211ENST00000620893 1006 ntAPPRIS P1 TSL 1 (best) BASIC12.15□□□□□ -0.46
COL6A5A8TX70 AC007718.1-201ENST00000621078 280 ntBASIC12.15□□□□□ -0.46
COL6A5A8TX70 LRCH1-201ENST00000311191 4710 ntAPPRIS ALT2 TSL 1 (best) BASIC12.15□□□□□ -0.46
COL6A5A8TX70 NOL4L-210ENST00000616976 1376 ntTSL 5 BASIC12.15□□□□□ -0.46
COL6A5A8TX70 PALM-201ENST00000264560 2755 ntAPPRIS ALT2 TSL 4 BASIC12.15□□□□□ -0.46
COL6A5A8TX70 BECN1-201ENST00000361523 2112 ntAPPRIS P1 TSL 1 (best) BASIC12.15□□□□□ -0.46
COL6A5A8TX70 LIPE-AS1-204ENST00000594624 1448 ntTSL 1 (best) BASIC12.15□□□□□ -0.46
COL6A5A8TX70 C7orf49-201ENST00000393114 1482 ntAPPRIS P1 TSL 1 (best) BASIC12.15□□□□□ -0.47
COL6A5A8TX70 ZDHHC23-201ENST00000330212 3778 ntAPPRIS P2 TSL 1 (best) BASIC12.15□□□□□ -0.47
COL6A5A8TX70 AL138694.1-201ENST00000637731 1689 ntAPPRIS P1 TSL 5 BASIC12.15□□□□□ -0.47
COL6A5A8TX70 PGAP3-203ENST00000378011 2533 ntTSL 2 BASIC12.15□□□□□ -0.47
COL6A5A8TX70 MAFK-201ENST00000343242 3368 ntAPPRIS P1 TSL 1 (best) BASIC12.15□□□□□ -0.47
COL6A5A8TX70 GPS1-201ENST00000306823 1842 ntAPPRIS P3 TSL 1 (best) BASIC12.14□□□□□ -0.47
COL6A5A8TX70 GPS1-226ENST00000623691 1839 ntAPPRIS ALT1 TSL 5 BASIC12.14□□□□□ -0.47
COL6A5A8TX70 MYO3A-206ENST00000543632 2203 ntTSL 1 (best) BASIC12.14□□□□□ -0.47
COL6A5A8TX70 PICALM-219ENST00000532317 3474 ntTSL 1 (best) BASIC12.14□□□□□ -0.47
COL6A5A8TX70 TPM2-202ENST00000360958 1189 ntAPPRIS P5 TSL 1 (best) BASIC12.14□□□□□ -0.47
COL6A5A8TX70 CD300A-204ENST00000392625 1163 ntTSL 1 (best) BASIC12.14□□□□□ -0.47
COL6A5A8TX70 DBI-203ENST00000393103 599 ntAPPRIS P4 TSL 1 (best) BASIC12.14□□□□□ -0.47
COL6A5A8TX70 GTF2A2-205ENST00000396064 633 ntTSL 3 BASIC12.14□□□□□ -0.47
COL6A5A8TX70 MPC1L-201ENST00000423387 571 ntAPPRIS P1 BASIC12.14□□□□□ -0.47
COL6A5A8TX70 SUMF2-210ENST00000437307 947 ntTSL 2 BASIC12.14□□□□□ -0.47
COL6A5A8TX70 FDPS-203ENST00000447866 1256 ntAPPRIS ALT1 TSL 5 BASIC12.14□□□□□ -0.47
COL6A5A8TX70 GTF2A2-208ENST00000484743 408 ntTSL 2 BASIC12.14□□□□□ -0.47
COL6A5A8TX70 UPK1B-205ENST00000497685 981 ntTSL 2 BASIC12.14□□□□□ -0.47
COL6A5A8TX70 AC108199.1-201ENST00000504249 508 ntTSL 3 BASIC12.14□□□□□ -0.47
COL6A5A8TX70 AC100850.1-201ENST00000506768 649 ntBASIC12.14□□□□□ -0.47
COL6A5A8TX70 AC116345.2-201ENST00000512837 523 ntBASIC12.14□□□□□ -0.47
COL6A5A8TX70 CHTF8-207ENST00000520529 475 ntTSL 2 BASIC12.14□□□□□ -0.47
COL6A5A8TX70 UBA52-208ENST00000596304 554 ntAPPRIS P1 TSL 5 BASIC12.14□□□□□ -0.47
COL6A5A8TX70 BX537318.1-201ENST00000608290 1207 ntTSL 5 BASIC12.14□□□□□ -0.47
COL6A5A8TX70 TDRKH-207ENST00000458431 2768 ntAPPRIS P2 TSL 1 (best) BASIC12.14□□□□□ -0.47
COL6A5A8TX70 NRG2-205ENST00000361474 3020 ntTSL 1 (best) BASIC12.14□□□□□ -0.47
COL6A5A8TX70 RABL6-203ENST00000371663 3078 ntAPPRIS ALT2 TSL 1 (best) BASIC12.14□□□□□ -0.47
COL6A5A8TX70 CFLAR-205ENST00000342795 1613 ntTSL 5 BASIC12.14□□□□□ -0.47
COL6A5A8TX70 PRSS54-201ENST00000219301 1810 ntAPPRIS P1 TSL 5 BASIC12.14□□□□□ -0.47
COL6A5A8TX70 CELF4-221ENST00000601019 1836 ntAPPRIS ALT1 TSL 5 BASIC12.14□□□□□ -0.47
COL6A5A8TX70 MTSS1L-204ENST00000616026 2241 ntAPPRIS ALT2 TSL 5 BASIC12.14□□□□□ -0.47
COL6A5A8TX70 COMP-202ENST00000425807 2292 ntTSL 2 BASIC12.14□□□□□ -0.47
COL6A5A8TX70 TCERG1L-201ENST00000368642 2618 ntAPPRIS P1 TSL 1 (best) BASIC12.14□□□□□ -0.47
COL6A5A8TX70 DIP2A-203ENST00000435722 2760 ntTSL 2 BASIC12.14□□□□□ -0.47
COL6A5A8TX70 PRSS36-201ENST00000268281 2840 ntAPPRIS P3 TSL 1 (best) BASIC12.14□□□□□ -0.47
COL6A5A8TX70 CADPS-201ENST00000283269 4591 ntAPPRIS P4 TSL 1 (best) BASIC12.14□□□□□ -0.47
COL6A5A8TX70 ITM2C-201ENST00000326407 1888 ntTSL 1 (best) BASIC12.14□□□□□ -0.47
COL6A5A8TX70 ATG10-202ENST00000355178 1438 ntTSL 2 BASIC12.14□□□□□ -0.47
COL6A5A8TX70 MYADM-202ENST00000391768 1492 ntAPPRIS P1 TSL 1 (best) BASIC12.14□□□□□ -0.47
COL6A5A8TX70 NDUFC1-201ENST00000394223 598 ntAPPRIS P1 TSL 3 BASIC12.14□□□□□ -0.47
COL6A5A8TX70 ZNF668-202ENST00000394983 2717 ntAPPRIS P1 TSL 5 BASIC12.14□□□□□ -0.47
COL6A5A8TX70 CCNJ-202ENST00000403870 2830 ntTSL 5 BASIC12.14□□□□□ -0.47
COL6A5A8TX70 OS9-205ENST00000413095 1660 ntTSL 2 BASIC12.14□□□□□ -0.47
COL6A5A8TX70 HCG27-204ENST00000424675 895 ntTSL 3 BASIC12.14□□□□□ -0.47
COL6A5A8TX70 HLA-DPA2-205ENST00000433582 733 ntBASIC12.14□□□□□ -0.47
COL6A5A8TX70 GAPDHP40-201ENST00000505218 1006 ntBASIC12.14□□□□□ -0.47
COL6A5A8TX70 FAM90A2P-201ENST00000511144 1395 ntBASIC12.14□□□□□ -0.47
COL6A5A8TX70 FAM90A25P-201ENST00000528404 1395 ntBASIC12.14□□□□□ -0.47
COL6A5A8TX70 IL32-218ENST00000530890 774 ntAPPRIS ALT2 TSL 2 BASIC12.14□□□□□ -0.47
COL6A5A8TX70 AC004803.1-204ENST00000543290 512 ntTSL 4 BASIC12.14□□□□□ -0.47
COL6A5A8TX70 MON1B-203ENST00000545553 1814 ntTSL 2 BASIC12.14□□□□□ -0.47
COL6A5A8TX70 AC010531.4-203ENST00000561709 660 ntTSL 3 BASIC12.14□□□□□ -0.47
COL6A5A8TX70 NAT9-211ENST00000580632 799 ntTSL 3 BASIC12.14□□□□□ -0.47
COL6A5A8TX70 ANAPC11-221ENST00000584314 559 ntTSL 2 BASIC12.14□□□□□ -0.47
COL6A5A8TX70 AC020922.3-201ENST00000595064 547 ntBASIC12.14□□□□□ -0.47
COL6A5A8TX70 REXO1L1P-202ENST00000608646 1974 ntBASIC12.14□□□□□ -0.47
COL6A5A8TX70 GRIA3-205ENST00000611689 936 ntTSL 1 (best) BASIC12.14□□□□□ -0.47
COL6A5A8TX70 TBC1D3J-201ENST00000620719 1426 ntBASIC12.14□□□□□ -0.47
COL6A5A8TX70 AC104333.4-201ENST00000632866 554 ntTSL 3 BASIC12.14□□□□□ -0.47
COL6A5A8TX70 SLC35E1-208ENST00000595753 5099 ntAPPRIS P1 TSL 1 (best) BASIC12.14□□□□□ -0.47
COL6A5A8TX70 RAPGEF5-203ENST00000405243 2800 ntTSL 1 (best) BASIC12.14□□□□□ -0.47
COL6A5A8TX70 ZNF696-201ENST00000330143 2795 ntAPPRIS P1 TSL 1 (best) BASIC12.14□□□□□ -0.47
COL6A5A8TX70 CNST-202ENST00000366512 2422 ntTSL 1 (best) BASIC12.14□□□□□ -0.47
COL6A5A8TX70 SLC26A10-201ENST00000320442 2389 ntAPPRIS P1 TSL 1 (best) BASIC12.14□□□□□ -0.47
COL6A5A8TX70 BAIAP2-204ENST00000428708 2095 ntAPPRIS ALT2 TSL 1 (best) BASIC12.14□□□□□ -0.47
COL6A5A8TX70 DMAP1-203ENST00000372289 1730 ntAPPRIS P1 TSL 1 (best) BASIC12.13□□□□□ -0.47
COL6A5A8TX70 FAM45A-201ENST00000361432 1648 ntAPPRIS P1 TSL 1 (best) BASIC12.13□□□□□ -0.47
COL6A5A8TX70 LINC02273-201ENST00000499452 1592 ntTSL 1 (best) BASIC12.13□□□□□ -0.47
COL6A5A8TX70 MVK-214ENST00000629016 1591 ntTSL 5 BASIC12.13□□□□□ -0.47
COL6A5A8TX70 ATP6AP2-211ENST00000636196 1403 ntAPPRIS ALT2 TSL 5 BASIC12.13□□□□□ -0.47
COL6A5A8TX70 TNNT3-201ENST00000278317 1210 ntAPPRIS P3 TSL 5 BASIC12.13□□□□□ -0.47
COL6A5A8TX70 TNNT3-207ENST00000381589 1060 ntAPPRIS ALT2 TSL 1 (best) BASIC12.13□□□□□ -0.47
COL6A5A8TX70 AP001582.1-201ENST00000525856 295 ntBASIC12.13□□□□□ -0.47
COL6A5A8TX70 AC004686.1-201ENST00000605113 538 ntBASIC12.13□□□□□ -0.47
COL6A5A8TX70 TLNRD1-201ENST00000267984 4845 ntAPPRIS P1 BASIC12.13□□□□□ -0.47
COL6A5A8TX70 SLC44A3-206ENST00000527077 1943 ntTSL 2 BASIC12.13□□□□□ -0.47
COL6A5A8TX70 RNASEH1-201ENST00000315212 1887 ntAPPRIS P1 TSL 1 (best) BASIC12.13□□□□□ -0.47
COL6A5A8TX70 ERICH5-201ENST00000318528 1761 ntAPPRIS P3 TSL 1 (best) BASIC12.13□□□□□ -0.47
COL6A5A8TX70 ATG10-203ENST00000458350 1795 ntAPPRIS P1 TSL 1 (best) BASIC12.13□□□□□ -0.47
COL6A5A8TX70 ZNF302-201ENST00000423823 2590 ntAPPRIS P3 TSL 1 (best) BASIC12.13□□□□□ -0.47
COL6A5A8TX70 AL138799.1-201ENST00000448213 1675 ntBASIC12.13□□□□□ -0.47
COL6A5A8TX70 MMD2-202ENST00000404774 2415 ntTSL 1 (best) BASIC12.13□□□□□ -0.47
COL6A5A8TX70 PITPNA-201ENST00000313486 3912 ntAPPRIS P2 TSL 5 BASIC12.13□□□□□ -0.47
COL6A5A8TX70 RNF212-202ENST00000382968 2335 ntAPPRIS P3 TSL 1 (best) BASIC12.13□□□□□ -0.47
COL6A5A8TX70 UBE2Q2-208ENST00000569423 2969 ntTSL 2 BASIC12.13□□□□□ -0.47
COL6A5A8TX70 KRT8P4-201ENST00000509735 1454 ntBASIC12.13□□□□□ -0.47
COL6A5A8TX70 RTKN2-203ENST00000395260 2076 ntTSL 1 (best) BASIC12.13□□□□□ -0.47
COL6A5A8TX70 COX20P1-201ENST00000366529 357 ntBASIC12.13□□□□□ -0.47
Retrieved 100 of 98,524 protein–RNA pairs in 27 ms