Protein–RNA interactions for Protein: Q9Y261

FOXA2, Hepatocyte nuclear factor 3-beta, humanhuman

Predicted RBP Predictions only

Length 457 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
FOXA2Q9Y261 GLUD2-201ENST00000328078 2493 ntAPPRIS P1 BASIC12.99□□□□□ -0.33
FOXA2Q9Y261 SYN1-202ENST00000340666 3172 ntAPPRIS ALT2 TSL 1 (best) BASIC12.99□□□□□ -0.33
FOXA2Q9Y261 TMEM30A-201ENST00000230461 4594 ntAPPRIS P1 TSL 1 (best) BASIC12.99□□□□□ -0.33
FOXA2Q9Y261 VIPR1-204ENST00000438259 2427 ntTSL 2 BASIC12.99□□□□□ -0.33
FOXA2Q9Y261 DIRAS2-201ENST00000375765 4386 ntAPPRIS P1 TSL 1 (best) BASIC12.99□□□□□ -0.33
FOXA2Q9Y261 WDR45-202ENST00000356463 1688 ntTSL 1 (best) BASIC12.99□□□□□ -0.33
FOXA2Q9Y261 MYEF2-201ENST00000267836 2958 ntAPPRIS ALT2 TSL 1 (best) BASIC12.99□□□□□ -0.33
FOXA2Q9Y261 DBN1-202ENST00000309007 2995 ntAPPRIS ALT2 TSL 1 (best) BASIC12.99□□□□□ -0.33
FOXA2Q9Y261 ZNF219-202ENST00000421093 2908 ntAPPRIS P1 TSL 1 (best) BASIC12.99□□□□□ -0.33
FOXA2Q9Y261 AC053503.2-201ENST00000420563 1598 ntTSL 2 BASIC12.98□□□□□ -0.33
FOXA2Q9Y261 RCC2-202ENST00000375436 4087 ntAPPRIS P1 TSL 1 (best) BASIC12.98□□□□□ -0.33
FOXA2Q9Y261 AL589702.1-201ENST00000641229 1509 ntBASIC12.98□□□□□ -0.33
FOXA2Q9Y261 ADAM22-204ENST00000398204 9334 ntAPPRIS ALT2 TSL 1 (best) BASIC12.98□□□□□ -0.33
FOXA2Q9Y261 AC144831.1-201ENST00000573312 2656 ntBASIC12.98□□□□□ -0.33
FOXA2Q9Y261 C11orf24-201ENST00000304271 2063 ntAPPRIS P3 TSL 1 (best) BASIC12.98□□□□□ -0.33
FOXA2Q9Y261 GRB7-204ENST00000394211 2093 ntAPPRIS P1 TSL 1 (best) BASIC12.98□□□□□ -0.33
FOXA2Q9Y261 USP27X-201ENST00000621775 2618 ntAPPRIS P1 BASIC12.98□□□□□ -0.33
FOXA2Q9Y261 DEPDC7-202ENST00000311388 2012 ntTSL 1 (best) BASIC12.98□□□□□ -0.33
FOXA2Q9Y261 SLC37A1-201ENST00000352133 3664 ntAPPRIS P1 TSL 1 (best) BASIC12.98□□□□□ -0.33
FOXA2Q9Y261 SHOX-201ENST00000334060 1951 ntTSL 5 BASIC12.98□□□□□ -0.33
FOXA2Q9Y261 RSRP1-202ENST00000431849 1954 ntAPPRIS ALT2 TSL 1 (best) BASIC12.98□□□□□ -0.33
FOXA2Q9Y261 HNF1B-207ENST00000621123 1971 ntTSL 1 (best) BASIC12.98□□□□□ -0.33
FOXA2Q9Y261 AC009237.3-202ENST00000608013 3042 ntTSL 1 (best) BASIC12.98□□□□□ -0.33
FOXA2Q9Y261 GTF3C4-201ENST00000372146 9043 ntAPPRIS P1 TSL 1 (best) BASIC12.98□□□□□ -0.33
FOXA2Q9Y261 AC073324.2-201ENST00000626532 2941 ntTSL 4 BASIC12.98□□□□□ -0.33
FOXA2Q9Y261 BEX4-202ENST00000372695 1328 ntAPPRIS P1 TSL 1 (best) BASIC12.98□□□□□ -0.33
FOXA2Q9Y261 RHD-207ENST00000454452 1303 ntTSL 1 (best) BASIC12.98□□□□□ -0.33
FOXA2Q9Y261 ACOX3-202ENST00000413009 2374 ntTSL 1 (best) BASIC12.98□□□□□ -0.33
FOXA2Q9Y261 SLC43A1-204ENST00000528450 2358 ntAPPRIS P1 TSL 1 (best) BASIC12.98□□□□□ -0.33
FOXA2Q9Y261 BDP1-202ENST00000380675 2861 ntAPPRIS ALT2 TSL 5 BASIC12.98□□□□□ -0.33
FOXA2Q9Y261 PAFAH1B1-202ENST00000397195 5497 ntAPPRIS P1 TSL 1 (best) BASIC12.98□□□□□ -0.33
FOXA2Q9Y261 TRAPPC11-202ENST00000357207 4435 ntTSL 1 (best) BASIC12.98□□□□□ -0.33
FOXA2Q9Y261 TRAPPC1-201ENST00000303731 811 ntAPPRIS P1 TSL 1 (best) BASIC12.98□□□□□ -0.33
FOXA2Q9Y261 FIGLA-201ENST00000332372 722 ntAPPRIS P1 TSL 1 (best) BASIC12.98□□□□□ -0.33
FOXA2Q9Y261 TCEAL3-203ENST00000372628 1221 ntAPPRIS P1 TSL 5 BASIC12.98□□□□□ -0.33
FOXA2Q9Y261 RPSAP43-201ENST00000402237 625 ntBASIC12.98□□□□□ -0.33
FOXA2Q9Y261 MIR1233-2-201ENST00000408138 82 ntBASIC12.98□□□□□ -0.33
FOXA2Q9Y261 MIR1233-1-201ENST00000408722 82 ntBASIC12.98□□□□□ -0.33
FOXA2Q9Y261 CEND1P1-201ENST00000451006 455 ntBASIC12.98□□□□□ -0.33
FOXA2Q9Y261 CCND1-203ENST00000536559 553 ntTSL 3 BASIC12.98□□□□□ -0.33
FOXA2Q9Y261 AC009133.1-203ENST00000569039 589 ntTSL 2 BASIC12.98□□□□□ -0.33
FOXA2Q9Y261 TWSG1-202ENST00000581641 1119 ntTSL 2 BASIC12.98□□□□□ -0.33
FOXA2Q9Y261 GPR42-202ENST00000597214 1182 ntAPPRIS P1 BASIC12.98□□□□□ -0.33
FOXA2Q9Y261 IRF1-211ENST00000613424 821 ntTSL 1 (best) BASIC12.98□□□□□ -0.33
FOXA2Q9Y261 AC023511.2-201ENST00000618803 211 ntBASIC12.98□□□□□ -0.33
FOXA2Q9Y261 SLC16A3-211ENST00000581287 4830 ntAPPRIS P1 TSL 1 (best) BASIC12.98□□□□□ -0.33
FOXA2Q9Y261 Z98749.3-201ENST00000400206 1770 ntAPPRIS P1 TSL 2 BASIC12.98□□□□□ -0.33
FOXA2Q9Y261 AC073439.1-201ENST00000624121 1774 ntBASIC12.98□□□□□ -0.33
FOXA2Q9Y261 PPP2CA-203ENST00000481195 4649 ntAPPRIS P1 TSL 1 (best) BASIC12.98□□□□□ -0.33
FOXA2Q9Y261 STXBP5-207ENST00000546097 2160 ntTSL 1 (best) BASIC12.98□□□□□ -0.33
FOXA2Q9Y261 RGS20-201ENST00000276500 1664 ntAPPRIS P1 TSL 1 (best) BASIC12.98□□□□□ -0.33
FOXA2Q9Y261 GP5-201ENST00000401815 3534 ntAPPRIS P1 BASIC12.98□□□□□ -0.33
FOXA2Q9Y261 MARCH4-201ENST00000273067 4447 ntAPPRIS P1 TSL 1 (best) BASIC12.98□□□□□ -0.33
FOXA2Q9Y261 SAMD4A-204ENST00000554335 3003 ntAPPRIS P1 TSL 5 BASIC12.98□□□□□ -0.33
FOXA2Q9Y261 AC009802.1-201ENST00000637973 1609 ntTSL 5 BASIC12.98□□□□□ -0.33
FOXA2Q9Y261 ICA1L-201ENST00000358299 3457 ntAPPRIS P1 TSL 2 BASIC12.98□□□□□ -0.33
FOXA2Q9Y261 ABTB1-206ENST00000468137 2065 ntTSL 1 (best) BASIC12.98□□□□□ -0.33
FOXA2Q9Y261 TMC6-216ENST00000590602 5268 ntAPPRIS P1 TSL 2 BASIC12.98□□□□□ -0.33
FOXA2Q9Y261 RASA4B-202ENST00000465829 2931 ntAPPRIS ALT1 TSL 1 (best) BASIC12.98□□□□□ -0.33
FOXA2Q9Y261 CLPTM1L-216ENST00000630539 2032 ntTSL 5 BASIC12.98□□□□□ -0.33
FOXA2Q9Y261 TGFBR2-201ENST00000295754 4621 ntAPPRIS P3 TSL 1 (best) BASIC12.98□□□□□ -0.33
FOXA2Q9Y261 GDF2-201ENST00000581492 1955 ntAPPRIS P1 TSL 1 (best) BASIC12.98□□□□□ -0.33
FOXA2Q9Y261 ADRA2A-201ENST00000280155 3745 ntAPPRIS P1 BASIC12.98□□□□□ -0.33
FOXA2Q9Y261 SEPT4-201ENST00000317256 1530 ntAPPRIS ALT2 TSL 1 (best) BASIC12.98□□□□□ -0.33
FOXA2Q9Y261 GRM5-205ENST00000455756 7927 ntAPPRIS P3 TSL 2 BASIC12.98□□□□□ -0.33
FOXA2Q9Y261 ITPRIPL1-205ENST00000536814 1947 ntAPPRIS P1 TSL 3 BASIC12.98□□□□□ -0.33
FOXA2Q9Y261 OGFOD2-224ENST00000545612 1465 ntTSL 2 BASIC12.97□□□□□ -0.33
FOXA2Q9Y261 AC005064.1-201ENST00000422488 2725 ntTSL 1 (best) BASIC12.97□□□□□ -0.33
FOXA2Q9Y261 STAT5B-201ENST00000293328 5103 ntAPPRIS P1 TSL 1 (best) BASIC12.97□□□□□ -0.33
FOXA2Q9Y261 WAC-203ENST00000354911 3042 ntAPPRIS P1 TSL 1 (best) BASIC12.97□□□□□ -0.33
FOXA2Q9Y261 SLC6A8-201ENST00000253122 3763 ntAPPRIS P1 TSL 1 (best) BASIC12.97□□□□□ -0.33
FOXA2Q9Y261 CNOT10-202ENST00000331889 2573 ntTSL 1 (best) BASIC12.97□□□□□ -0.33
FOXA2Q9Y261 ACOXL-201ENST00000340561 2188 ntTSL 1 (best) BASIC12.97□□□□□ -0.33
FOXA2Q9Y261 KLK5-203ENST00000593428 1365 ntAPPRIS P1 TSL 1 (best) BASIC12.97□□□□□ -0.33
FOXA2Q9Y261 GCK-203ENST00000395796 2539 ntTSL 1 (best) BASIC12.97□□□□□ -0.33
FOXA2Q9Y261 UGT8-201ENST00000310836 4084 ntAPPRIS P1 TSL 1 (best) BASIC12.97□□□□□ -0.33
FOXA2Q9Y261 TMEM237-202ENST00000409444 5592 ntAPPRIS ALT2 TSL 5 BASIC12.97□□□□□ -0.33
FOXA2Q9Y261 BNIP2-201ENST00000267859 6325 ntTSL 1 (best) BASIC12.97□□□□□ -0.33
FOXA2Q9Y261 SSFA2-205ENST00000431877 5150 ntAPPRIS ALT2 TSL 1 (best) BASIC12.97□□□□□ -0.33
FOXA2Q9Y261 ADSL-220ENST00000636714 1734 ntAPPRIS ALT1 TSL 5 BASIC12.97□□□□□ -0.33
FOXA2Q9Y261 EPS15L1-207ENST00000594975 2489 ntTSL 2 BASIC12.97□□□□□ -0.33
FOXA2Q9Y261 PDE4C-207ENST00000594617 4655 ntAPPRIS P3 TSL 1 (best) BASIC12.97□□□□□ -0.33
FOXA2Q9Y261 C10orf107-201ENST00000330194 1685 ntAPPRIS P2 TSL 1 (best) BASIC12.97□□□□□ -0.33
FOXA2Q9Y261 PAAF1-205ENST00000535604 1695 ntTSL 5 BASIC12.97□□□□□ -0.33
FOXA2Q9Y261 B3GLCT-201ENST00000343307 4254 ntAPPRIS P1 TSL 1 (best) BASIC12.97□□□□□ -0.33
FOXA2Q9Y261 ZNF767P-201ENST00000463567 3520 ntTSL 2 BASIC12.97□□□□□ -0.33
FOXA2Q9Y261 PCTP-201ENST00000268896 2044 ntAPPRIS P1 TSL 1 (best) BASIC12.97□□□□□ -0.33
FOXA2Q9Y261 ARHGAP11B-210ENST00000622744 2042 ntAPPRIS P1 TSL 1 (best) BASIC12.97□□□□□ -0.33
FOXA2Q9Y261 CARMIL3-201ENST00000342740 4597 ntAPPRIS P1 TSL 5 BASIC12.97□□□□□ -0.33
FOXA2Q9Y261 CRYBA2-201ENST00000295728 893 ntAPPRIS P1 TSL 1 (best) BASIC12.97□□□□□ -0.33
FOXA2Q9Y261 CLIC1-208ENST00000375784 1254 ntAPPRIS P1 TSL 1 (best) BASIC12.97□□□□□ -0.33
FOXA2Q9Y261 ALKBH6-202ENST00000378875 973 ntAPPRIS P3 TSL 1 (best) BASIC12.97□□□□□ -0.33
FOXA2Q9Y261 RFXANK-202ENST00000392324 1059 ntTSL 1 (best) BASIC12.97□□□□□ -0.33
FOXA2Q9Y261 TFAMP1-201ENST00000412727 736 ntBASIC12.97□□□□□ -0.33
FOXA2Q9Y261 HRAS-204ENST00000417302 1233 ntTSL 5 BASIC12.97□□□□□ -0.33
FOXA2Q9Y261 AL365226.1-201ENST00000448363 349 ntTSL 2 BASIC12.97□□□□□ -0.33
FOXA2Q9Y261 SPDYE11-202ENST00000450699 704 ntBASIC12.97□□□□□ -0.33
FOXA2Q9Y261 HRAS-205ENST00000451590 1151 ntAPPRIS P1 TSL 2 BASIC12.97□□□□□ -0.33
FOXA2Q9Y261 PKD2-202ENST00000502363 1222 ntTSL 5 BASIC12.97□□□□□ -0.33
FOXA2Q9Y261 GATB-205ENST00000508611 605 ntTSL 2 BASIC12.97□□□□□ -0.33
Retrieved 100 of 98,524 protein–RNA pairs in 57.2 ms