Protein–RNA interactions for Protein: Q96MF4

CCDC140, Coiled-coil domain-containing protein 140, humanhuman

Predictions only

Length 163 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
CCDC140Q96MF4 TFPI2-201ENST00000222543 2444 ntAPPRIS P1 TSL 1 (best) BASIC12.38□□□□□ -0.43
CCDC140Q96MF4 GATA6-201ENST00000269216 3770 ntAPPRIS P1 TSL 1 (best) BASIC12.38□□□□□ -0.43
CCDC140Q96MF4 FBXO21-208ENST00000622495 6040 ntAPPRIS ALT1 TSL 1 (best) BASIC12.38□□□□□ -0.43
CCDC140Q96MF4 SNRK-204ENST00000454177 2961 ntAPPRIS P1 TSL 2 BASIC12.38□□□□□ -0.43
CCDC140Q96MF4 ATP6V0E2-AS1-201ENST00000461019 2973 ntTSL 1 (best) BASIC12.38□□□□□ -0.43
CCDC140Q96MF4 LFNG-204ENST00000402045 2058 ntTSL 1 (best) BASIC12.38□□□□□ -0.43
CCDC140Q96MF4 CHMP1A-202ENST00000535997 2295 ntTSL 2 BASIC12.38□□□□□ -0.43
CCDC140Q96MF4 NBL1-201ENST00000289749 731 ntAPPRIS ALT2 TSL 2 BASIC12.38□□□□□ -0.43
CCDC140Q96MF4 POLR1C-201ENST00000304004 1280 ntTSL 1 (best) BASIC12.38□□□□□ -0.43
CCDC140Q96MF4 ERAS-201ENST00000338270 1266 ntAPPRIS P1 BASIC12.38□□□□□ -0.43
CCDC140Q96MF4 LINC01121-201ENST00000378479 1095 ntTSL 1 (best) BASIC12.38□□□□□ -0.43
CCDC140Q96MF4 HNRNPFP1-201ENST00000391730 1133 ntBASIC12.38□□□□□ -0.43
CCDC140Q96MF4 FBLN7-204ENST00000409667 1124 ntTSL 1 (best) BASIC12.38□□□□□ -0.43
CCDC140Q96MF4 AC007388.1-210ENST00000415640 458 ntTSL 3 BASIC12.38□□□□□ -0.43
CCDC140Q96MF4 RNF183-202ENST00000416588 849 ntAPPRIS P1 TSL 3 BASIC12.38□□□□□ -0.43
CCDC140Q96MF4 TMEM191A-202ENST00000419950 663 ntTSL 3 BASIC12.38□□□□□ -0.43
CCDC140Q96MF4 PRRT3-AS1-201ENST00000431558 614 ntTSL 2 BASIC12.38□□□□□ -0.43
CCDC140Q96MF4 MTND6P24-201ENST00000440466 518 ntBASIC12.38□□□□□ -0.43
CCDC140Q96MF4 NRSN2-AS1-202ENST00000442637 762 ntTSL 3 BASIC12.38□□□□□ -0.43
CCDC140Q96MF4 AC004865.2-202ENST00000444348 852 ntTSL 3 BASIC12.38□□□□□ -0.43
CCDC140Q96MF4 ELP6-209ENST00000446787 894 ntTSL 3 BASIC12.38□□□□□ -0.43
CCDC140Q96MF4 URGCP-206ENST00000446958 365 ntTSL 2 BASIC12.38□□□□□ -0.43
CCDC140Q96MF4 AC091729.1-201ENST00000449721 869 ntTSL 3 BASIC12.38□□□□□ -0.43
CCDC140Q96MF4 CALML4-206ENST00000467889 987 ntAPPRIS P1 TSL 1 (best) BASIC12.38□□□□□ -0.43
CCDC140Q96MF4 FAM72B-205ENST00000471903 676 ntTSL 5 BASIC12.38□□□□□ -0.43
CCDC140Q96MF4 AC021744.1-201ENST00000518354 453 ntTSL 3 BASIC12.38□□□□□ -0.43
CCDC140Q96MF4 DCUN1D5-209ENST00000531543 1030 ntTSL 5 BASIC12.38□□□□□ -0.43
CCDC140Q96MF4 AC007406.4-201ENST00000539568 765 ntTSL 1 (best) BASIC12.38□□□□□ -0.43
CCDC140Q96MF4 VPS29-207ENST00000549970 818 ntTSL 3 BASIC12.38□□□□□ -0.43
CCDC140Q96MF4 AL450472.2-201ENST00000603663 1156 ntBASIC12.38□□□□□ -0.43
CCDC140Q96MF4 AL022328.4-201ENST00000608025 1001 ntTSL 2 BASIC12.38□□□□□ -0.43
CCDC140Q96MF4 LSS-205ENST00000457828 4390 ntTSL 1 (best) BASIC12.38□□□□□ -0.43
CCDC140Q96MF4 TSPAN5-201ENST00000305798 3365 ntAPPRIS P1 TSL 1 (best) BASIC12.38□□□□□ -0.43
CCDC140Q96MF4 KL-201ENST00000380099 5006 ntAPPRIS P1 TSL 1 (best) BASIC12.38□□□□□ -0.43
CCDC140Q96MF4 WNT2-201ENST00000265441 2907 ntAPPRIS P1 TSL 1 (best) BASIC12.38□□□□□ -0.43
CCDC140Q96MF4 GADD45B-201ENST00000215631 1373 ntAPPRIS P1 TSL 1 (best) BASIC12.38□□□□□ -0.43
CCDC140Q96MF4 PCDHA12-201ENST00000398631 5233 ntAPPRIS P1 TSL 1 (best) BASIC12.38□□□□□ -0.43
CCDC140Q96MF4 GABRB3-215ENST00000622697 5876 ntTSL 5 BASIC12.38□□□□□ -0.43
CCDC140Q96MF4 CADPS2-204ENST00000412584 4308 ntAPPRIS P2 TSL 1 (best) BASIC12.38□□□□□ -0.43
CCDC140Q96MF4 HACD3-206ENST00000565299 1465 ntTSL 5 BASIC12.38□□□□□ -0.43
CCDC140Q96MF4 GAS2L2-201ENST00000604063 2661 ntAPPRIS ALT2 TSL 5 BASIC12.38□□□□□ -0.43
CCDC140Q96MF4 WDR81-204ENST00000419248 3315 ntTSL 2 BASIC12.38□□□□□ -0.43
CCDC140Q96MF4 TBC1D9B-202ENST00000356834 5173 ntAPPRIS ALT2 TSL 1 (best) BASIC12.38□□□□□ -0.43
CCDC140Q96MF4 CICP13-201ENST00000422015 2789 ntBASIC12.38□□□□□ -0.43
CCDC140Q96MF4 C16orf58-211ENST00000570164 2783 ntAPPRIS ALT1 TSL 5 BASIC12.38□□□□□ -0.43
CCDC140Q96MF4 VSX2-201ENST00000261980 2995 ntAPPRIS P1 TSL 1 (best) BASIC12.38□□□□□ -0.43
CCDC140Q96MF4 SYBU-219ENST00000528647 2995 ntAPPRIS P4 TSL 2 BASIC12.38□□□□□ -0.43
CCDC140Q96MF4 DNM1-208ENST00000486160 3181 ntAPPRIS ALT1 TSL 1 (best) BASIC12.38□□□□□ -0.43
CCDC140Q96MF4 BUD13-202ENST00000375445 1793 ntAPPRIS ALT2 TSL 1 (best) BASIC12.38□□□□□ -0.43
CCDC140Q96MF4 ASAH1-240ENST00000636997 1774 ntTSL 5 BASIC12.38□□□□□ -0.43
CCDC140Q96MF4 ENDOV-212ENST00000520284 2500 ntTSL 2 BASIC12.38□□□□□ -0.43
CCDC140Q96MF4 MAPKAP1-206ENST00000373511 3252 ntTSL 1 (best) BASIC12.38□□□□□ -0.43
CCDC140Q96MF4 TUBGCP2-204ENST00000417178 4029 ntTSL 2 BASIC12.38□□□□□ -0.43
CCDC140Q96MF4 OVCH1-AS1-204ENST00000641955 5529 ntBASIC12.38□□□□□ -0.43
CCDC140Q96MF4 GLS2-201ENST00000311966 2623 ntAPPRIS P1 TSL 1 (best) BASIC12.38□□□□□ -0.43
CCDC140Q96MF4 C14orf93-207ENST00000397382 1986 ntAPPRIS P1 TSL 5 BASIC12.38□□□□□ -0.43
CCDC140Q96MF4 Z99756.1-201ENST00000458463 1951 ntTSL 1 (best) BASIC12.38□□□□□ -0.43
CCDC140Q96MF4 XRCC1-202ENST00000543982 1994 ntTSL 2 BASIC12.38□□□□□ -0.43
CCDC140Q96MF4 NDRG2-209ENST00000397853 2079 ntAPPRIS P4 TSL 2 BASIC12.38□□□□□ -0.43
CCDC140Q96MF4 STK4-AS1-201ENST00000434401 2065 ntTSL 2 BASIC12.38□□□□□ -0.43
CCDC140Q96MF4 PTPRN2-201ENST00000389413 4723 ntTSL 1 (best) BASIC12.37□□□□□ -0.43
CCDC140Q96MF4 AHRR-201ENST00000316418 5661 ntAPPRIS P3 TSL 1 (best) BASIC12.37□□□□□ -0.43
CCDC140Q96MF4 DUOXA1-202ENST00000430224 1317 ntTSL 1 (best) BASIC12.37□□□□□ -0.43
CCDC140Q96MF4 DHX40-202ENST00000425628 2255 ntTSL 2 BASIC12.37□□□□□ -0.43
CCDC140Q96MF4 SLC27A6-201ENST00000262462 3219 ntAPPRIS P1 TSL 1 (best) BASIC12.37□□□□□ -0.43
CCDC140Q96MF4 FLII-221ENST00000578558 2377 ntTSL 5 BASIC12.37□□□□□ -0.43
CCDC140Q96MF4 HDAC5-201ENST00000225983 5326 ntAPPRIS P3 TSL 5 BASIC12.37□□□□□ -0.43
CCDC140Q96MF4 CLCNKB-204ENST00000619181 1544 ntTSL 5 BASIC12.37□□□□□ -0.43
CCDC140Q96MF4 AC007495.1-201ENST00000501259 2678 ntTSL 1 (best) BASIC12.37□□□□□ -0.43
CCDC140Q96MF4 RPS9-207ENST00000441429 1600 ntTSL 1 (best) BASIC12.37□□□□□ -0.43
CCDC140Q96MF4 ALOX12-AS1-201ENST00000399540 1730 ntTSL 2 BASIC12.37□□□□□ -0.43
CCDC140Q96MF4 NBPF11-205ENST00000615281 5494 ntAPPRIS P2 TSL 1 (best) BASIC12.37□□□□□ -0.43
CCDC140Q96MF4 GK2-201ENST00000358842 1942 ntAPPRIS P1 BASIC12.37□□□□□ -0.43
CCDC140Q96MF4 PEG3-206ENST00000598410 5304 ntTSL 1 (best) BASIC12.37□□□□□ -0.43
CCDC140Q96MF4 VSTM2A-204ENST00000407838 3112 ntAPPRIS P1 TSL 3 BASIC12.37□□□□□ -0.43
CCDC140Q96MF4 RPS19-201ENST00000221975 500 ntTSL 3 BASIC12.37□□□□□ -0.43
CCDC140Q96MF4 POP7-201ENST00000303151 927 ntAPPRIS P1 TSL 1 (best) BASIC12.37□□□□□ -0.43
CCDC140Q96MF4 FKBP2-201ENST00000309366 657 ntAPPRIS P1 TSL 1 (best) BASIC12.37□□□□□ -0.43
CCDC140Q96MF4 ETNK1-202ENST00000335148 1083 ntTSL 1 (best) BASIC12.37□□□□□ -0.43
CCDC140Q96MF4 RNF186-201ENST00000375121 1250 ntAPPRIS P1 BASIC12.37□□□□□ -0.43
CCDC140Q96MF4 HFE-208ENST00000397022 1280 ntTSL 1 (best) BASIC12.37□□□□□ -0.43
CCDC140Q96MF4 RAB17-204ENST00000409822 1077 ntTSL 5 BASIC12.37□□□□□ -0.43
CCDC140Q96MF4 SNHG17-203ENST00000417578 880 ntTSL 2 BASIC12.37□□□□□ -0.43
CCDC140Q96MF4 CDH23-AS1-201ENST00000428918 378 ntTSL 2 BASIC12.37□□□□□ -0.43
CCDC140Q96MF4 CNN2P2-201ENST00000443536 909 ntBASIC12.37□□□□□ -0.43
CCDC140Q96MF4 LINC01983-203ENST00000444346 519 ntTSL 2 BASIC12.37□□□□□ -0.43
CCDC140Q96MF4 CNN2P3-201ENST00000450201 906 ntBASIC12.37□□□□□ -0.43
CCDC140Q96MF4 PPP6R2P1-201ENST00000450880 1275 ntBASIC12.37□□□□□ -0.43
CCDC140Q96MF4 HFE-214ENST00000488199 781 ntTSL 1 (best) BASIC12.37□□□□□ -0.43
CCDC140Q96MF4 SLBP-205ENST00000488267 987 ntTSL 2 BASIC12.37□□□□□ -0.43
CCDC140Q96MF4 C3orf67-212ENST00000491845 832 ntTSL 1 (best) BASIC12.37□□□□□ -0.43
CCDC140Q96MF4 TPT1-AS1-219ENST00000523506 574 ntTSL 4 BASIC12.37□□□□□ -0.43
CCDC140Q96MF4 NDRG4-247ENST00000568640 1281 ntTSL 2 BASIC12.37□□□□□ -0.43
CCDC140Q96MF4 RPS19-202ENST00000593863 526 ntAPPRIS P1 TSL 3 BASIC12.37□□□□□ -0.43
CCDC140Q96MF4 GPALPP1-207ENST00000611650 899 ntBASIC12.37□□□□□ -0.43
CCDC140Q96MF4 AL136317.3-201ENST00000618497 906 ntBASIC12.37□□□□□ -0.43
CCDC140Q96MF4 CBR3-AS1-216ENST00000624883 564 ntTSL 3 BASIC12.37□□□□□ -0.43
CCDC140Q96MF4 PROZ-202ENST00000375547 1488 ntAPPRIS P3 TSL 1 (best) BASIC12.37□□□□□ -0.43
CCDC140Q96MF4 IL18BP-204ENST00000393703 1788 ntAPPRIS P2 TSL 3 BASIC12.37□□□□□ -0.43
CCDC140Q96MF4 ANXA8-203ENST00000583874 1860 ntTSL 1 (best) BASIC12.37□□□□□ -0.43
Retrieved 100 of 98,524 protein–RNA pairs in 35.1 ms