Protein–RNA interactions for Protein: Q7Z3Y7

KRT28, Keratin, type I cytoskeletal 28, humanhuman

Predictions only

Length 464 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
KRT28Q7Z3Y7 COQ7-201ENST00000321998 2657 ntAPPRIS P3 TSL 1 (best) BASIC21.33■■□□□ 1.01
KRT28Q7Z3Y7 ZNRF3-201ENST00000402174 2667 ntAPPRIS P3 TSL 2 BASIC21.33■■□□□ 1.01
KRT28Q7Z3Y7 PRMT2-202ENST00000334494 1334 ntTSL 1 (best) BASIC21.33■■□□□ 1.01
KRT28Q7Z3Y7 ARID1B-220ENST00000636930 8246 ntAPPRIS ALT2 TSL 2 BASIC21.33■■□□□ 1.01
KRT28Q7Z3Y7 APBB1-202ENST00000311051 2619 ntAPPRIS P3 TSL 1 (best) BASIC21.33■■□□□ 1.01
KRT28Q7Z3Y7 ZBTB33-202ENST00000557385 2346 ntAPPRIS P1 TSL 1 (best) BASIC21.33■■□□□ 1.01
KRT28Q7Z3Y7 FAM49B-223ENST00000522746 2196 ntAPPRIS P1 TSL 1 (best) BASIC21.33■■□□□ 1.01
KRT28Q7Z3Y7 KMT5C-212ENST00000630497 2037 ntTSL 1 (best) BASIC21.33■■□□□ 1.01
KRT28Q7Z3Y7 BX276092.9-202ENST00000636096 1722 ntAPPRIS P5 TSL 5 BASIC21.33■■□□□ 1.01
KRT28Q7Z3Y7 CACNA1A-246ENST00000637736 8340 ntAPPRIS ALT2 TSL 5 BASIC21.33■■□□□ 1.01
KRT28Q7Z3Y7 XRCC3-201ENST00000352127 2563 ntAPPRIS P1 TSL 1 (best) BASIC21.33■■□□□ 1.01
KRT28Q7Z3Y7 OCEL1-201ENST00000215061 1133 ntAPPRIS P2 TSL 1 (best) BASIC21.33■■□□□ 1.01
KRT28Q7Z3Y7 AL157392.1-201ENST00000412388 373 ntTSL 2 BASIC21.33■■□□□ 1.01
KRT28Q7Z3Y7 ZNF789-204ENST00000448667 1055 ntTSL 1 (best) BASIC21.33■■□□□ 1.01
KRT28Q7Z3Y7 AC078785.1-201ENST00000496389 734 ntTSL 3 BASIC21.33■■□□□ 1.01
KRT28Q7Z3Y7 NAT9-222ENST00000583476 583 ntTSL 3 BASIC21.33■■□□□ 1.01
KRT28Q7Z3Y7 ARL6IP6-201ENST00000326446 2805 ntAPPRIS P1 TSL 1 (best) BASIC21.33■■□□□ 1.01
KRT28Q7Z3Y7 DMPK-201ENST00000291270 2787 ntAPPRIS P3 TSL 5 BASIC21.33■■□□□ 1
KRT28Q7Z3Y7 TES-201ENST00000358204 2782 ntAPPRIS P1 TSL 1 (best) BASIC21.33■■□□□ 1
KRT28Q7Z3Y7 AKAP9-205ENST00000394564 1356 ntTSL 1 (best) BASIC21.33■■□□□ 1
KRT28Q7Z3Y7 MEGF9-201ENST00000373930 6298 ntAPPRIS P1 TSL 2 BASIC21.33■■□□□ 1
KRT28Q7Z3Y7 SCOC-208ENST00000510586 2193 ntAPPRIS ALT1 TSL 5 BASIC21.33■■□□□ 1
KRT28Q7Z3Y7 PHF12-201ENST00000268756 2957 ntTSL 1 (best) BASIC21.33■■□□□ 1
KRT28Q7Z3Y7 SIGLEC7-201ENST00000305628 1469 ntTSL 1 (best) BASIC21.32■■□□□ 1
KRT28Q7Z3Y7 SYNM-202ENST00000336292 7394 ntAPPRIS P4 TSL 1 (best) BASIC21.32■■□□□ 1
KRT28Q7Z3Y7 ITM2C-201ENST00000326407 1888 ntTSL 1 (best) BASIC21.32■■□□□ 1
KRT28Q7Z3Y7 ORAOV1-206ENST00000536870 2274 ntTSL 1 (best) BASIC21.32■■□□□ 1
KRT28Q7Z3Y7 IL1RN-202ENST00000354115 1747 ntTSL 1 (best) BASIC21.32■■□□□ 1
KRT28Q7Z3Y7 ST6GALNAC6-216ENST00000622357 2396 ntAPPRIS ALT1 TSL 1 (best) BASIC21.32■■□□□ 1
KRT28Q7Z3Y7 HSFX1-201ENST00000370416 1963 ntAPPRIS P1 TSL 1 (best) BASIC21.32■■□□□ 1
KRT28Q7Z3Y7 SCRN1-205ENST00000425819 1552 ntTSL 2 BASIC21.32■■□□□ 1
KRT28Q7Z3Y7 FFAR2-201ENST00000246549 2051 ntAPPRIS P1 BASIC21.32■■□□□ 1
KRT28Q7Z3Y7 NSD3-201ENST00000316985 3995 ntTSL 1 (best) BASIC21.32■■□□□ 1
KRT28Q7Z3Y7 ZNF408-201ENST00000311764 2442 ntAPPRIS P1 TSL 1 (best) BASIC21.32■■□□□ 1
KRT28Q7Z3Y7 PRKG1-AS1-201ENST00000420193 971 ntTSL 3 BASIC21.32■■□□□ 1
KRT28Q7Z3Y7 KRTAP19-9P-201ENST00000421795 191 ntBASIC21.32■■□□□ 1
KRT28Q7Z3Y7 HCST-202ENST00000437550 445 ntAPPRIS ALT2 TSL 1 (best) BASIC21.32■■□□□ 1
KRT28Q7Z3Y7 IGHV3OR16-8-201ENST00000565407 349 ntAPPRIS P1 BASIC21.32■■□□□ 1
KRT28Q7Z3Y7 AC136428.1-201ENST00000569103 349 ntAPPRIS P1 TSL 5 BASIC21.32■■□□□ 1
KRT28Q7Z3Y7 NKG7-204ENST00000595217 816 ntTSL 2 BASIC21.32■■□□□ 1
KRT28Q7Z3Y7 ECM1P1-201ENST00000604092 1279 ntBASIC21.32■■□□□ 1
KRT28Q7Z3Y7 BX539320.1-201ENST00000623759 877 ntBASIC21.32■■□□□ 1
KRT28Q7Z3Y7 AL137026.1-201ENST00000624407 503 ntTSL 4 BASIC21.32■■□□□ 1
KRT28Q7Z3Y7 LINC00595-217ENST00000635545 549 ntTSL 4 BASIC21.32■■□□□ 1
KRT28Q7Z3Y7 TSHZ3-201ENST00000240587 5176 ntAPPRIS P1 TSL 1 (best) BASIC21.32■■□□□ 1
KRT28Q7Z3Y7 SQSTM1-202ENST00000389805 2986 ntAPPRIS P1 TSL 1 (best) BASIC21.32■■□□□ 1
KRT28Q7Z3Y7 NRP1-204ENST00000374822 2213 ntTSL 1 (best) BASIC21.32■■□□□ 1
KRT28Q7Z3Y7 CERNA1-202ENST00000560518 1972 ntTSL 2 BASIC21.32■■□□□ 1
KRT28Q7Z3Y7 OCLN-202ENST00000396442 1748 ntAPPRIS P1 TSL 1 (best) BASIC21.32■■□□□ 1
KRT28Q7Z3Y7 AL035685.1-202ENST00000637341 1688 ntTSL 5 BASIC21.31■■□□□ 1
KRT28Q7Z3Y7 QPCTL-201ENST00000012049 2310 ntAPPRIS P1 TSL 2 BASIC21.31■■□□□ 1
KRT28Q7Z3Y7 NOL4L-202ENST00000326071 701 ntTSL 1 (best) BASIC21.31■■□□□ 1
KRT28Q7Z3Y7 AC091046.1-201ENST00000331871 207 ntBASIC21.31■■□□□ 1
KRT28Q7Z3Y7 C14orf178-201ENST00000355883 642 ntAPPRIS P3 TSL 5 BASIC21.31■■□□□ 1
KRT28Q7Z3Y7 CSAG1-202ENST00000370287 875 ntAPPRIS P2 TSL 1 (best) BASIC21.31■■□□□ 1
KRT28Q7Z3Y7 PPIE-203ENST00000372830 1198 ntTSL 1 (best) BASIC21.31■■□□□ 1
KRT28Q7Z3Y7 PFDN6-204ENST00000395131 884 ntAPPRIS P1 TSL 1 (best) BASIC21.31■■□□□ 1
KRT28Q7Z3Y7 POM121L10P-201ENST00000436994 1285 ntBASIC21.31■■□□□ 1
KRT28Q7Z3Y7 CNN2P10-201ENST00000443067 918 ntBASIC21.31■■□□□ 1
KRT28Q7Z3Y7 SIRPB2-203ENST00000444444 884 ntTSL 2 BASIC21.31■■□□□ 1
KRT28Q7Z3Y7 AC128709.1-201ENST00000445908 600 ntTSL 3 BASIC21.31■■□□□ 1
KRT28Q7Z3Y7 FDPS-203ENST00000447866 1256 ntAPPRIS ALT1 TSL 5 BASIC21.31■■□□□ 1
KRT28Q7Z3Y7 HSPB1P2-201ENST00000448722 546 ntBASIC21.31■■□□□ 1
KRT28Q7Z3Y7 PGAP2-214ENST00000465307 1100 ntTSL 2 BASIC21.31■■□□□ 1
KRT28Q7Z3Y7 GDNF-AS1-201ENST00000503382 604 ntTSL 1 (best) BASIC21.31■■□□□ 1
KRT28Q7Z3Y7 AC126915.1-201ENST00000522847 1038 ntBASIC21.31■■□□□ 1
KRT28Q7Z3Y7 C17orf50-202ENST00000604830 477 ntTSL 3 BASIC21.31■■□□□ 1
KRT28Q7Z3Y7 AC097724.1-201ENST00000609581 426 ntBASIC21.31■■□□□ 1
KRT28Q7Z3Y7 STRN3-202ENST00000357479 2799 ntAPPRIS P1 TSL 5 BASIC21.31■■□□□ 1
KRT28Q7Z3Y7 ADARB1-201ENST00000348831 6882 ntAPPRIS P1 TSL 1 (best) BASIC21.31■■□□□ 1
KRT28Q7Z3Y7 FBXO7-201ENST00000266087 2195 ntAPPRIS P1 TSL 1 (best) BASIC21.31■■□□□ 1
KRT28Q7Z3Y7 AP4M1-201ENST00000359593 1817 ntAPPRIS P1 TSL 1 (best) BASIC21.31■■□□□ 1
KRT28Q7Z3Y7 AP4M1-206ENST00000429084 1836 ntTSL 5 BASIC21.31■■□□□ 1
KRT28Q7Z3Y7 GPBAR1-204ENST00000522678 2003 ntAPPRIS P1 TSL 2 BASIC21.31■■□□□ 1
KRT28Q7Z3Y7 SNAP91-201ENST00000195649 4434 ntAPPRIS ALT2 TSL 5 BASIC21.3■■□□□ 1
KRT28Q7Z3Y7 SNAP91-204ENST00000369694 4449 ntAPPRIS P2 TSL 5 BASIC21.3■■□□□ 1
KRT28Q7Z3Y7 USP32-201ENST00000300896 5171 ntAPPRIS P1 TSL 1 (best) BASIC21.3■■□□□ 1
KRT28Q7Z3Y7 SLFNL1-201ENST00000302946 1951 ntAPPRIS P3 TSL 1 (best) BASIC21.3■■□□□ 1
KRT28Q7Z3Y7 SHISA5-210ENST00000444115 2081 ntTSL 2 BASIC21.3■■□□□ 1
KRT28Q7Z3Y7 ZNF232-201ENST00000250076 2179 ntAPPRIS P3 TSL 5 BASIC21.3■■□□□ 1
KRT28Q7Z3Y7 LGI4-201ENST00000310123 2814 ntAPPRIS P1 TSL 1 (best) BASIC21.3■■□□□ 1
KRT28Q7Z3Y7 SLC39A14-201ENST00000240095 1708 ntAPPRIS ALT2 TSL 1 (best) BASIC21.3■■□□□ 1
KRT28Q7Z3Y7 AC018892.3-201ENST00000623986 2499 ntBASIC21.3■■□□□ 1
KRT28Q7Z3Y7 BOD1L2-201ENST00000585477 3239 ntAPPRIS P1 BASIC21.3■■□□□ 1
KRT28Q7Z3Y7 HIST2H2AA3-201ENST00000369159 549 ntAPPRIS P1 BASIC21.3■■□□□ 1
KRT28Q7Z3Y7 MRPS25-203ENST00000444840 1281 ntTSL 2 BASIC21.3■■□□□ 1
KRT28Q7Z3Y7 IMP3P2-201ENST00000489760 475 ntBASIC21.3■■□□□ 1
KRT28Q7Z3Y7 ANAPC13-205ENST00000511751 896 ntAPPRIS P1 TSL 3 BASIC21.3■■□□□ 1
KRT28Q7Z3Y7 NIP7-208ENST00000569637 1099 ntTSL 2 BASIC21.3■■□□□ 1
KRT28Q7Z3Y7 AC021594.1-201ENST00000587174 636 ntTSL 3 BASIC21.3■■□□□ 1
KRT28Q7Z3Y7 AC092634.5-202ENST00000587736 928 ntTSL 2 BASIC21.3■■□□□ 1
KRT28Q7Z3Y7 NDUFV2P1-201ENST00000596415 907 ntBASIC21.3■■□□□ 1
KRT28Q7Z3Y7 AC011495.3-201ENST00000596472 427 ntTSL 2 BASIC21.3■■□□□ 1
KRT28Q7Z3Y7 PRKAR2A-201ENST00000265563 6471 ntAPPRIS P1 TSL 1 (best) BASIC21.3■■□□□ 1
KRT28Q7Z3Y7 PTPRJ-202ENST00000440289 3158 ntTSL 1 (best) BASIC21.3■■□□□ 1
KRT28Q7Z3Y7 GPR149-201ENST00000389740 2323 ntAPPRIS P1 TSL 1 (best) BASIC21.3■■□□□ 1
KRT28Q7Z3Y7 UBAP1-203ENST00000379186 2524 ntTSL 5 BASIC21.3■■□□□ 1
KRT28Q7Z3Y7 POLL-217ENST00000628479 1953 ntTSL 5 BASIC21.3■■□□□ 1
KRT28Q7Z3Y7 MFSD11-220ENST00000621483 2850 ntAPPRIS P1 TSL 1 (best) BASIC21.3■■□□□ 1
KRT28Q7Z3Y7 KLF13-201ENST00000307145 6825 ntAPPRIS P1 TSL 1 (best) BASIC21.29■■□□□ 1
Retrieved 100 of 98,524 protein–RNA pairs in 56.3 ms