Protein–RNA interactions for Protein: Q6ZMZ3

SYNE3, Nesprin-3, humanhuman

Predictions only

Length 975 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
SYNE3Q6ZMZ3 TUBB3-201ENST00000315491 1769 ntAPPRIS P1 TSL 1 (best) BASIC18.88■□□□□ 0.61
SYNE3Q6ZMZ3 CIAPIN1-207ENST00000565961 1814 ntTSL 3 BASIC18.88■□□□□ 0.61
SYNE3Q6ZMZ3 PM20D2-201ENST00000275072 4708 ntAPPRIS P1 TSL 1 (best) BASIC18.88■□□□□ 0.61
SYNE3Q6ZMZ3 DPP6-203ENST00000404039 4798 ntTSL 1 (best) BASIC18.88■□□□□ 0.61
SYNE3Q6ZMZ3 CD34-202ENST00000356522 2874 ntTSL 1 (best) BASIC18.88■□□□□ 0.61
SYNE3Q6ZMZ3 PBX1-215ENST00000559240 2866 ntTSL 5 BASIC18.88■□□□□ 0.61
SYNE3Q6ZMZ3 SHMT2-232ENST00000557487 1918 ntTSL 1 (best) BASIC18.88■□□□□ 0.61
SYNE3Q6ZMZ3 HPCAL1-207ENST00000620771 1941 ntAPPRIS P1 TSL 2 BASIC18.88■□□□□ 0.61
SYNE3Q6ZMZ3 NUDT16-203ENST00000537561 5943 ntTSL 5 BASIC18.88■□□□□ 0.61
SYNE3Q6ZMZ3 PSMF1-201ENST00000246015 2042 ntAPPRIS ALT1 TSL 3 BASIC18.88■□□□□ 0.61
SYNE3Q6ZMZ3 POLI-208ENST00000579534 6133 ntAPPRIS P1 TSL 1 (best) BASIC18.88■□□□□ 0.61
SYNE3Q6ZMZ3 CAMK1D-204ENST00000619168 8153 ntAPPRIS P4 TSL 1 (best) BASIC18.88■□□□□ 0.61
SYNE3Q6ZMZ3 C12orf65-201ENST00000253233 2073 ntAPPRIS P2 TSL 1 (best) BASIC18.88■□□□□ 0.61
SYNE3Q6ZMZ3 PLXNB1-202ENST00000358536 7308 ntAPPRIS P2 TSL 1 (best) BASIC18.88■□□□□ 0.61
SYNE3Q6ZMZ3 PITPNM1-202ENST00000436757 4216 ntAPPRIS ALT1 TSL 1 (best) BASIC18.88■□□□□ 0.61
SYNE3Q6ZMZ3 AFG3L2-201ENST00000269143 3247 ntAPPRIS P1 TSL 1 (best) BASIC18.88■□□□□ 0.61
SYNE3Q6ZMZ3 ACOXL-201ENST00000340561 2188 ntTSL 1 (best) BASIC18.88■□□□□ 0.61
SYNE3Q6ZMZ3 ATP11A-AS1-201ENST00000446442 2192 ntTSL 1 (best) BASIC18.88■□□□□ 0.61
SYNE3Q6ZMZ3 KLHL36-204ENST00000564996 2173 ntAPPRIS P1 TSL 1 (best) BASIC18.88■□□□□ 0.61
SYNE3Q6ZMZ3 CDKN1A-203ENST00000405375 2267 ntAPPRIS P1 TSL 1 (best) BASIC18.88■□□□□ 0.61
SYNE3Q6ZMZ3 FLJ31104-201ENST00000500093 2289 ntTSL 1 (best) BASIC18.88■□□□□ 0.61
SYNE3Q6ZMZ3 GBA2-202ENST00000378094 3757 ntAPPRIS ALT2 TSL 1 (best) BASIC18.88■□□□□ 0.61
SYNE3Q6ZMZ3 LCE1A-201ENST00000335123 422 ntAPPRIS P1 BASIC18.88■□□□□ 0.61
SYNE3Q6ZMZ3 AL353597.1-201ENST00000414875 998 ntTSL 5 BASIC18.88■□□□□ 0.61
SYNE3Q6ZMZ3 URGCP-206ENST00000446958 365 ntTSL 2 BASIC18.88■□□□□ 0.61
SYNE3Q6ZMZ3 SSNA1-204ENST00000464553 723 ntTSL 2 BASIC18.88■□□□□ 0.61
SYNE3Q6ZMZ3 AC119403.1-201ENST00000520090 776 ntTSL 5 BASIC18.88■□□□□ 0.61
SYNE3Q6ZMZ3 CYB561D1-209ENST00000533024 913 ntTSL 2 BASIC18.88■□□□□ 0.61
SYNE3Q6ZMZ3 AL512356.2-201ENST00000546955 174 ntBASIC18.88■□□□□ 0.61
SYNE3Q6ZMZ3 AC025678.2-201ENST00000562061 970 ntBASIC18.88■□□□□ 0.61
SYNE3Q6ZMZ3 AL022328.4-201ENST00000608025 1001 ntTSL 2 BASIC18.88■□□□□ 0.61
SYNE3Q6ZMZ3 LAMTOR5-208ENST00000614544 846 ntTSL 1 (best) BASIC18.88■□□□□ 0.61
SYNE3Q6ZMZ3 AC110491.3-201ENST00000631985 460 ntTSL 2 BASIC18.88■□□□□ 0.61
SYNE3Q6ZMZ3 AL157832.3-201ENST00000635764 1005 ntTSL 5 BASIC18.88■□□□□ 0.61
SYNE3Q6ZMZ3 BCL2L11-219ENST00000619294 5132 ntTSL 5 BASIC18.88■□□□□ 0.61
SYNE3Q6ZMZ3 EIF4G1-209ENST00000414031 5569 ntTSL 1 (best) BASIC18.88■□□□□ 0.61
SYNE3Q6ZMZ3 AL691432.1-201ENST00000596308 1422 ntBASIC18.88■□□□□ 0.61
SYNE3Q6ZMZ3 ZFAND6-207ENST00000558494 1472 ntAPPRIS P1 TSL 1 (best) BASIC18.88■□□□□ 0.61
SYNE3Q6ZMZ3 KLK10-202ENST00000358789 1508 ntAPPRIS P1 TSL 1 (best) BASIC18.88■□□□□ 0.61
SYNE3Q6ZMZ3 SLC25A36-203ENST00000446041 4638 ntAPPRIS P3 TSL 2 BASIC18.88■□□□□ 0.61
SYNE3Q6ZMZ3 BFSP2-201ENST00000302334 1558 ntAPPRIS P1 TSL 1 (best) BASIC18.88■□□□□ 0.61
SYNE3Q6ZMZ3 APLN-201ENST00000429967 3205 ntAPPRIS P1 TSL 1 (best) BASIC18.88■□□□□ 0.61
SYNE3Q6ZMZ3 CCP110-201ENST00000381396 5446 ntAPPRIS ALT1 TSL 1 (best) BASIC18.88■□□□□ 0.61
SYNE3Q6ZMZ3 MPL-202ENST00000413998 1887 ntAPPRIS ALT2 TSL 1 (best) BASIC18.88■□□□□ 0.61
SYNE3Q6ZMZ3 CYP11A1-201ENST00000268053 1934 ntAPPRIS P1 TSL 1 (best) BASIC18.88■□□□□ 0.61
SYNE3Q6ZMZ3 CYP4F3-202ENST00000585846 2056 ntAPPRIS ALT1 TSL 1 (best) BASIC18.88■□□□□ 0.61
SYNE3Q6ZMZ3 ACOX3-203ENST00000503233 2253 ntAPPRIS P1 TSL 1 (best) BASIC18.88■□□□□ 0.61
SYNE3Q6ZMZ3 ATE1-209ENST00000543447 4826 ntTSL 2 BASIC18.88■□□□□ 0.61
SYNE3Q6ZMZ3 AL162727.3-201ENST00000635661 2787 ntBASIC18.87■□□□□ 0.61
SYNE3Q6ZMZ3 CTNNB1-210ENST00000453024 2841 ntTSL 2 BASIC18.87■□□□□ 0.61
SYNE3Q6ZMZ3 ATP6V0E2-AS1-201ENST00000461019 2973 ntTSL 1 (best) BASIC18.87■□□□□ 0.61
SYNE3Q6ZMZ3 ANKRD33B-201ENST00000296657 9188 ntAPPRIS P1 TSL 5 BASIC18.87■□□□□ 0.61
SYNE3Q6ZMZ3 CACFD1-201ENST00000291722 2688 ntTSL 2 BASIC18.87■□□□□ 0.61
SYNE3Q6ZMZ3 CA4-201ENST00000300900 1154 ntAPPRIS P1 TSL 1 (best) BASIC18.87■□□□□ 0.61
SYNE3Q6ZMZ3 PAXBP1-202ENST00000331923 3995 ntAPPRIS P1 TSL 1 (best) BASIC18.87■□□□□ 0.61
SYNE3Q6ZMZ3 B3GLCT-201ENST00000343307 4254 ntAPPRIS P1 TSL 1 (best) BASIC18.87■□□□□ 0.61
SYNE3Q6ZMZ3 HRCT1-201ENST00000354323 950 ntAPPRIS P1 BASIC18.87■□□□□ 0.61
SYNE3Q6ZMZ3 H2BFM-201ENST00000355016 1882 ntAPPRIS P1 TSL 2 BASIC18.87■□□□□ 0.61
SYNE3Q6ZMZ3 ID3-201ENST00000374561 1251 ntAPPRIS P1 TSL 1 (best) BASIC18.87■□□□□ 0.61
SYNE3Q6ZMZ3 Z98749.3-201ENST00000400206 1770 ntAPPRIS P1 TSL 2 BASIC18.87■□□□□ 0.61
SYNE3Q6ZMZ3 LINC01273-201ENST00000411453 685 ntTSL 2 BASIC18.87■□□□□ 0.61
SYNE3Q6ZMZ3 TMEM191A-202ENST00000419950 663 ntTSL 3 BASIC18.87■□□□□ 0.61
SYNE3Q6ZMZ3 AC004865.2-202ENST00000444348 852 ntTSL 3 BASIC18.87■□□□□ 0.61
SYNE3Q6ZMZ3 IQCF3-204ENST00000446775 1241 ntAPPRIS P1 TSL 1 (best) BASIC18.87■□□□□ 0.61
SYNE3Q6ZMZ3 POR-218ENST00000461988 2522 ntAPPRIS P1 TSL 1 (best) BASIC18.87■□□□□ 0.61
SYNE3Q6ZMZ3 IQSEC2-204ENST00000485377 835 ntTSL 1 (best) BASIC18.87■□□□□ 0.61
SYNE3Q6ZMZ3 NAPA-AS1-201ENST00000593284 1753 ntTSL 2 BASIC18.87■□□□□ 0.61
SYNE3Q6ZMZ3 WNT1-202ENST00000613114 1278 ntTSL 5 BASIC18.87■□□□□ 0.61
SYNE3Q6ZMZ3 PLXNB2-214ENST00000614805 1387 ntTSL 5 BASIC18.87■□□□□ 0.61
SYNE3Q6ZMZ3 UGGT2-213ENST00000638479 1010 ntTSL 5 BASIC18.87■□□□□ 0.61
SYNE3Q6ZMZ3 JMJD1C-202ENST00000399262 8666 ntAPPRIS P3 TSL 5 BASIC18.87■□□□□ 0.61
SYNE3Q6ZMZ3 FGD4-212ENST00000534526 2977 ntTSL 5 BASIC18.87■□□□□ 0.61
SYNE3Q6ZMZ3 FBLN1-202ENST00000327858 2896 ntAPPRIS P1 TSL 1 (best) BASIC18.87■□□□□ 0.61
SYNE3Q6ZMZ3 MYEF2-215ENST00000610570 2591 ntTSL 5 BASIC18.87■□□□□ 0.61
SYNE3Q6ZMZ3 SUPT20HL2-201ENST00000486479 2409 ntBASIC18.86■□□□□ 0.61
SYNE3Q6ZMZ3 WASHC2C-208ENST00000537517 4417 ntAPPRIS ALT2 TSL 2 BASIC18.86■□□□□ 0.61
SYNE3Q6ZMZ3 LCK-201ENST00000333070 2166 ntTSL 1 (best) BASIC18.86■□□□□ 0.61
SYNE3Q6ZMZ3 RAD23B-201ENST00000358015 4119 ntAPPRIS P1 TSL 1 (best) BASIC18.86■□□□□ 0.61
SYNE3Q6ZMZ3 NLGN4X-203ENST00000381093 5865 ntAPPRIS P2 TSL 2 BASIC18.86■□□□□ 0.61
SYNE3Q6ZMZ3 DUSP13-203ENST00000372702 1778 ntAPPRIS ALT1 TSL 1 (best) BASIC18.86■□□□□ 0.61
SYNE3Q6ZMZ3 INTS11-203ENST00000419704 1798 ntTSL 2 BASIC18.86■□□□□ 0.61
SYNE3Q6ZMZ3 AC105202.1-204ENST00000502167 1781 ntTSL 1 (best) BASIC18.86■□□□□ 0.61
SYNE3Q6ZMZ3 HNRNPLL-212ENST00000608859 3035 ntTSL 5 BASIC18.86■□□□□ 0.61
SYNE3Q6ZMZ3 CD1E-212ENST00000368167 1458 ntAPPRIS P4 TSL 1 (best) BASIC18.86■□□□□ 0.61
SYNE3Q6ZMZ3 MAP4K5-201ENST00000013125 4354 ntAPPRIS P1 TSL 1 (best) BASIC18.86■□□□□ 0.61
SYNE3Q6ZMZ3 EIF4G1-206ENST00000392537 5229 ntTSL 2 BASIC18.86■□□□□ 0.61
SYNE3Q6ZMZ3 RWDD3-201ENST00000263893 1078 ntTSL 1 (best) BASIC18.86■□□□□ 0.61
SYNE3Q6ZMZ3 PAGE5-201ENST00000289619 741 ntAPPRIS P3 TSL 1 (best) BASIC18.86■□□□□ 0.61
SYNE3Q6ZMZ3 RPL21-203ENST00000319826 806 ntAPPRIS P1 TSL 2 BASIC18.86■□□□□ 0.61
SYNE3Q6ZMZ3 ERAS-201ENST00000338270 1266 ntAPPRIS P1 BASIC18.86■□□□□ 0.61
SYNE3Q6ZMZ3 AC004987.2-201ENST00000395959 1148 ntBASIC18.86■□□□□ 0.61
SYNE3Q6ZMZ3 RAB17-204ENST00000409822 1077 ntTSL 5 BASIC18.86■□□□□ 0.61
SYNE3Q6ZMZ3 AC007388.1-210ENST00000415640 458 ntTSL 3 BASIC18.86■□□□□ 0.61
SYNE3Q6ZMZ3 LINC02558-202ENST00000436395 298 ntTSL 5 BASIC18.86■□□□□ 0.61
SYNE3Q6ZMZ3 AC124067.2-201ENST00000521989 510 ntTSL 2 BASIC18.86■□□□□ 0.61
SYNE3Q6ZMZ3 AC069262.1-201ENST00000539058 672 ntBASIC18.86■□□□□ 0.61
SYNE3Q6ZMZ3 TMEM263-206ENST00000550344 925 ntAPPRIS P1 TSL 2 BASIC18.86■□□□□ 0.61
SYNE3Q6ZMZ3 AC105021.1-202ENST00000570572 669 ntBASIC18.86■□□□□ 0.61
SYNE3Q6ZMZ3 MIR4453-201ENST00000584019 89 ntBASIC18.86■□□□□ 0.61
SYNE3Q6ZMZ3 SLC39A1-203ENST00000368621 2398 ntAPPRIS P1 TSL 2 BASIC18.86■□□□□ 0.61
Retrieved 100 of 98,524 protein–RNA pairs in 38.5 ms