Protein–RNA interactions for Protein: P78396

CCNA1, Cyclin-A1, humanhuman

Predictions only

Length 465 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
CCNA1P78396 TBCEL-205ENST00000529397 1375 ntAPPRIS P1 TSL 1 (best) BASIC18.07■□□□□ 0.48
CCNA1P78396 IQSEC2-202ENST00000396435 6015 ntAPPRIS ALT2 TSL 1 (best) BASIC18.07■□□□□ 0.48
CCNA1P78396 POLR3E-202ENST00000359210 2469 ntTSL 1 (best) BASIC18.07■□□□□ 0.48
CCNA1P78396 SLC39A1-202ENST00000356205 2084 ntAPPRIS P1 TSL 1 (best) BASIC18.07■□□□□ 0.48
CCNA1P78396 GYPC-202ENST00000356887 2067 ntAPPRIS ALT2 TSL 1 (best) BASIC18.07■□□□□ 0.48
CCNA1P78396 TRPV4-205ENST00000537083 2436 ntTSL 1 (best) BASIC18.07■□□□□ 0.48
CCNA1P78396 AL035685.1-202ENST00000637341 1688 ntTSL 5 BASIC18.07■□□□□ 0.48
CCNA1P78396 SGSH-201ENST00000326317 2784 ntAPPRIS P1 TSL 1 (best) BASIC18.07■□□□□ 0.48
CCNA1P78396 AC005498.3-201ENST00000596587 2045 ntTSL 1 (best) BASIC18.07■□□□□ 0.48
CCNA1P78396 ZNF84-201ENST00000327668 7162 ntAPPRIS P2 TSL 1 (best) BASIC18.07■□□□□ 0.48
CCNA1P78396 PRKN-201ENST00000338468 1276 ntTSL 1 (best) BASIC18.07■□□□□ 0.48
CCNA1P78396 SPAG11B-203ENST00000359758 612 ntTSL 1 (best) BASIC18.07■□□□□ 0.48
CCNA1P78396 ACKR1-201ENST00000368121 1240 ntBASIC18.07■□□□□ 0.48
CCNA1P78396 LCE1E-202ENST00000368771 575 ntAPPRIS P2 TSL 3 BASIC18.07■□□□□ 0.48
CCNA1P78396 MPV17-206ENST00000402722 827 ntTSL 3 BASIC18.07■□□□□ 0.48
CCNA1P78396 C2orf27AP3-201ENST00000434123 579 ntBASIC18.07■□□□□ 0.48
CCNA1P78396 AC078785.1-203ENST00000467342 573 ntTSL 4 BASIC18.07■□□□□ 0.48
CCNA1P78396 CRYGN-205ENST00000491928 698 ntTSL 1 (best) BASIC18.07■□□□□ 0.48
CCNA1P78396 CD74-212ENST00000524315 584 ntTSL 5 BASIC18.07■□□□□ 0.48
CCNA1P78396 GNLY-210ENST00000524600 750 ntAPPRIS ALT2 TSL 2 BASIC18.07■□□□□ 0.48
CCNA1P78396 FBXL12-211ENST00000591009 1005 ntTSL 1 (best) BASIC18.07■□□□□ 0.48
CCNA1P78396 AL354718.3-201ENST00000616414 581 ntBASIC18.07■□□□□ 0.48
CCNA1P78396 PCDHGC3-204ENST00000617222 731 ntTSL 3 BASIC18.07■□□□□ 0.48
CCNA1P78396 CR382287.1-201ENST00000623954 586 ntBASIC18.07■□□□□ 0.48
CCNA1P78396 RHOXF1P1-202ENST00000635473 501 ntBASIC18.07■□□□□ 0.48
CCNA1P78396 AC006453.2-202ENST00000635968 827 ntTSL 5 BASIC18.07■□□□□ 0.48
CCNA1P78396 LTB4R2-202ENST00000528054 3092 ntBASIC18.07■□□□□ 0.48
CCNA1P78396 HSFX1-201ENST00000370416 1963 ntAPPRIS P1 TSL 1 (best) BASIC18.07■□□□□ 0.48
CCNA1P78396 AC134407.2-201ENST00000625089 1978 ntBASIC18.07■□□□□ 0.48
CCNA1P78396 RHBDF1-201ENST00000262316 2992 ntAPPRIS P1 TSL 1 (best) BASIC18.07■□□□□ 0.48
CCNA1P78396 CHTF18-202ENST00000317063 2988 ntAPPRIS ALT2 TSL 5 BASIC18.07■□□□□ 0.48
CCNA1P78396 PTP4A1-201ENST00000370651 5088 ntAPPRIS P1 TSL 1 (best) BASIC18.07■□□□□ 0.48
CCNA1P78396 WIF1-201ENST00000286574 2238 ntAPPRIS P1 TSL 1 (best) BASIC18.07■□□□□ 0.48
CCNA1P78396 PYCR1-201ENST00000329875 1855 ntAPPRIS P1 TSL 1 (best) BASIC18.07■□□□□ 0.48
CCNA1P78396 MAPKAPK3-201ENST00000357955 2500 ntAPPRIS P1 TSL 1 (best) BASIC18.07■□□□□ 0.48
CCNA1P78396 ACOXL-201ENST00000340561 2188 ntTSL 1 (best) BASIC18.07■□□□□ 0.48
CCNA1P78396 ZNF865-201ENST00000568956 4005 ntAPPRIS P1 TSL 2 BASIC18.07■□□□□ 0.48
CCNA1P78396 SNAI3-AS1-202ENST00000563475 2081 ntTSL 1 (best) BASIC18.07■□□□□ 0.48
CCNA1P78396 TMEM220-202ENST00000455996 1402 ntAPPRIS ALT2 TSL 1 (best) BASIC18.06■□□□□ 0.48
CCNA1P78396 MIER1-205ENST00000371014 1728 ntTSL 2 BASIC18.06■□□□□ 0.48
CCNA1P78396 APH1A-204ENST00000414276 1718 ntTSL 2 BASIC18.06■□□□□ 0.48
CCNA1P78396 U73166.1-201ENST00000439898 2625 ntTSL 1 (best) BASIC18.06■□□□□ 0.48
CCNA1P78396 FBLN7-203ENST00000409450 1394 ntTSL 1 (best) BASIC18.06■□□□□ 0.48
CCNA1P78396 AC012531.2-201ENST00000512206 1389 ntTSL 1 (best) BASIC18.06■□□□□ 0.48
CCNA1P78396 AP003397.1-201ENST00000525706 1387 ntTSL 1 (best) BASIC18.06■□□□□ 0.48
CCNA1P78396 ATXN2-219ENST00000550104 4648 ntAPPRIS P3 TSL 1 (best) BASIC18.06■□□□□ 0.48
CCNA1P78396 QSOX1-201ENST00000367600 2519 ntAPPRIS ALT2 TSL 1 (best) BASIC18.06■□□□□ 0.48
CCNA1P78396 POTEE-204ENST00000613282 1926 ntTSL 5 BASIC18.06■□□□□ 0.48
CCNA1P78396 POTEI-202ENST00000615053 1926 ntTSL 5 BASIC18.06■□□□□ 0.48
CCNA1P78396 TRIM13-201ENST00000356017 1637 ntAPPRIS ALT1 TSL 1 (best) BASIC18.06■□□□□ 0.48
CCNA1P78396 DDX19B-204ENST00000451014 1608 ntTSL 2 BASIC18.06■□□□□ 0.48
CCNA1P78396 PAPOLB-201ENST00000404991 4262 ntAPPRIS P1 BASIC18.06■□□□□ 0.48
CCNA1P78396 WNK1-206ENST00000535572 9886 ntAPPRIS ALT2 TSL 1 (best) BASIC18.06■□□□□ 0.48
CCNA1P78396 COMT-205ENST00000406520 1339 ntAPPRIS P3 TSL 1 (best) BASIC18.06■□□□□ 0.48
CCNA1P78396 VAV2-202ENST00000371851 5101 ntAPPRIS ALT2 TSL 5 BASIC18.06■□□□□ 0.48
CCNA1P78396 KDM1A-202ENST00000400181 3059 ntAPPRIS ALT2 TSL 1 (best) BASIC18.06■□□□□ 0.48
CCNA1P78396 SARAF-201ENST00000256255 2154 ntAPPRIS P1 TSL 1 (best) BASIC18.06■□□□□ 0.48
CCNA1P78396 SFTPB-202ENST00000409383 1867 ntAPPRIS P2 TSL 1 (best) BASIC18.06■□□□□ 0.48
CCNA1P78396 ADORA2A-213ENST00000610595 2736 ntAPPRIS P1 TSL 2 BASIC18.06■□□□□ 0.48
CCNA1P78396 DMTN-209ENST00000517600 1569 ntTSL 5 BASIC18.06■□□□□ 0.48
CCNA1P78396 AKTIP-202ENST00000394657 2426 ntAPPRIS P3 TSL 2 BASIC18.06■□□□□ 0.48
CCNA1P78396 CCDC88B-201ENST00000301897 870 ntTSL 1 (best) BASIC18.06■□□□□ 0.48
CCNA1P78396 ROPN1B-210ENST00000514116 1088 ntAPPRIS P1 TSL 1 (best) BASIC18.06■□□□□ 0.48
CCNA1P78396 AC090099.4-201ENST00000527671 1027 ntTSL 5 BASIC18.06■□□□□ 0.48
CCNA1P78396 C12orf57-206ENST00000544681 980 ntTSL 2 BASIC18.06■□□□□ 0.48
CCNA1P78396 LINC02109-201ENST00000565798 869 ntTSL 5 BASIC18.06■□□□□ 0.48
CCNA1P78396 AC103810.3-201ENST00000583567 96 ntBASIC18.06■□□□□ 0.48
CCNA1P78396 AC003070.2-201ENST00000589730 386 ntTSL 3 BASIC18.06■□□□□ 0.48
CCNA1P78396 AC020911.1-201ENST00000591038 578 ntTSL 2 BASIC18.06■□□□□ 0.48
CCNA1P78396 ATF5-205ENST00000600336 682 ntTSL 2 BASIC18.06■□□□□ 0.48
CCNA1P78396 AC243829.4-204ENST00000616926 1115 ntTSL 5 BASIC18.06■□□□□ 0.48
CCNA1P78396 HNRNPUL1-203ENST00000378215 2864 ntTSL 2 BASIC18.06■□□□□ 0.48
CCNA1P78396 MYO1D-201ENST00000318217 5563 ntAPPRIS P1 TSL 1 (best) BASIC18.06■□□□□ 0.48
CCNA1P78396 LINC01979-201ENST00000576738 5271 ntTSL 1 (best) BASIC18.06■□□□□ 0.48
CCNA1P78396 LUC7L3-201ENST00000240304 1972 ntAPPRIS P1 TSL 2 BASIC18.06■□□□□ 0.48
CCNA1P78396 ASIC3-203ENST00000357922 2232 ntTSL 1 (best) BASIC18.06■□□□□ 0.48
CCNA1P78396 TXNRD2-214ENST00000491939 2238 ntTSL 1 (best) BASIC18.06■□□□□ 0.48
CCNA1P78396 SLC25A2-201ENST00000239451 1417 ntAPPRIS P1 BASIC18.06■□□□□ 0.48
CCNA1P78396 TAP1-201ENST00000354258 2959 ntAPPRIS P1 TSL 1 (best) BASIC18.06■□□□□ 0.48
CCNA1P78396 KCNC4-204ENST00000438661 2953 ntAPPRIS ALT2 TSL 1 (best) BASIC18.06■□□□□ 0.48
CCNA1P78396 JPH2-202ENST00000372980 4787 ntAPPRIS P1 TSL 5 BASIC18.06■□□□□ 0.48
CCNA1P78396 DARS-201ENST00000264161 2361 ntAPPRIS P1 TSL 1 (best) BASIC18.05■□□□□ 0.48
CCNA1P78396 CFLAR-205ENST00000342795 1613 ntTSL 5 BASIC18.05■□□□□ 0.48
CCNA1P78396 EPHX2-202ENST00000517536 1600 ntTSL 5 BASIC18.05■□□□□ 0.48
CCNA1P78396 AC007326.5-201ENST00000640084 1382 ntTSL 5 BASIC18.05■□□□□ 0.48
CCNA1P78396 RBM33-205ENST00000392759 1580 ntTSL 5 BASIC18.05■□□□□ 0.48
CCNA1P78396 CAMK2B-208ENST00000395747 1557 ntTSL 1 (best) BASIC18.05■□□□□ 0.48
CCNA1P78396 CCT4-204ENST00000544079 2261 ntTSL 2 BASIC18.05■□□□□ 0.48
CCNA1P78396 HMOX2-205ENST00000458134 1797 ntAPPRIS P1 TSL 5 BASIC18.05■□□□□ 0.48
CCNA1P78396 SLC2A4-204ENST00000571308 1768 ntTSL 5 BASIC18.05■□□□□ 0.48
CCNA1P78396 USE1-206ENST00000595101 1776 ntTSL 2 BASIC18.05■□□□□ 0.48
CCNA1P78396 LSM12-204ENST00000591247 2484 ntAPPRIS P1 TSL 1 (best) BASIC18.05■□□□□ 0.48
CCNA1P78396 CEP83-AS1-201ENST00000623122 2482 ntBASIC18.05■□□□□ 0.48
CCNA1P78396 AL121723.1-201ENST00000445194 1519 ntBASIC18.05■□□□□ 0.48
CCNA1P78396 KDM4B-203ENST00000536461 5027 ntTSL 1 (best) BASIC18.05■□□□□ 0.48
CCNA1P78396 IFNL2-201ENST00000331982 737 ntAPPRIS P1 TSL 1 (best) BASIC18.05■□□□□ 0.48
CCNA1P78396 PQLC3-202ENST00000402361 696 ntTSL 2 BASIC18.05■□□□□ 0.48
CCNA1P78396 AL592464.1-201ENST00000429389 429 ntTSL 2 BASIC18.05■□□□□ 0.48
CCNA1P78396 LIMS3-201ENST00000437679 1220 ntTSL 1 (best) BASIC18.05■□□□□ 0.48
CCNA1P78396 TAF8-204ENST00000456846 1293 ntAPPRIS ALT1 TSL 1 (best) BASIC18.05■□□□□ 0.48
Retrieved 100 of 98,524 protein–RNA pairs in 27.3 ms