Protein–RNA interactions for Protein: P53420

COL4A4, Collagen alpha-4(IV) chain, humanhuman

Predicted RBP Predictions only

Length 1,690 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
COL4A4P53420 SEPHS1-201ENST00000327347 3273 ntAPPRIS P1 TSL 1 (best) BASIC16.81■□□□□ 0.28
COL4A4P53420 MEAF6-201ENST00000296214 1525 ntAPPRIS ALT1 TSL 1 (best) BASIC16.81■□□□□ 0.28
COL4A4P53420 SLC25A26-201ENST00000336733 1023 ntTSL 1 (best) BASIC16.81■□□□□ 0.28
COL4A4P53420 TSHR-202ENST00000342443 1281 ntTSL 1 (best) BASIC16.81■□□□□ 0.28
COL4A4P53420 ZNF593-202ENST00000374266 675 ntAPPRIS P1 TSL 1 (best) BASIC16.81■□□□□ 0.28
COL4A4P53420 DEF8-202ENST00000418391 852 ntTSL 2 BASIC16.81■□□□□ 0.28
COL4A4P53420 AL450003.2-201ENST00000450445 428 ntTSL 5 BASIC16.81■□□□□ 0.28
COL4A4P53420 TMBIM4-205ENST00000535812 766 ntTSL 4 BASIC16.81■□□□□ 0.28
COL4A4P53420 PAFAH1B3-202ENST00000538771 1098 ntAPPRIS P1 TSL 2 BASIC16.81■□□□□ 0.28
COL4A4P53420 AL163636.1-201ENST00000554286 915 ntTSL 5 BASIC16.81■□□□□ 0.28
COL4A4P53420 TMBIM4-212ENST00000556010 610 ntTSL 5 BASIC16.81■□□□□ 0.28
COL4A4P53420 ZSCAN32-210ENST00000573830 668 ntTSL 3 BASIC16.81■□□□□ 0.28
COL4A4P53420 IFT20-206ENST00000578122 834 ntTSL 2 BASIC16.81■□□□□ 0.28
COL4A4P53420 IFT20-208ENST00000578985 831 ntTSL 3 BASIC16.81■□□□□ 0.28
COL4A4P53420 TUBB6-213ENST00000591909 1017 ntTSL 1 (best) BASIC16.81■□□□□ 0.28
COL4A4P53420 U62317.3-201ENST00000608319 855 ntBASIC16.81■□□□□ 0.28
COL4A4P53420 ELN-221ENST00000445912 2583 ntAPPRIS ALT2 TSL 2 BASIC16.81■□□□□ 0.28
COL4A4P53420 RXRB-201ENST00000374680 2908 ntAPPRIS P3 TSL 1 (best) BASIC16.81■□□□□ 0.28
COL4A4P53420 SLC6A9-202ENST00000360584 2330 ntTSL 1 (best) BASIC16.81■□□□□ 0.28
COL4A4P53420 SOX14-201ENST00000306087 2055 ntAPPRIS P1 BASIC16.81■□□□□ 0.28
COL4A4P53420 DNAJA3-201ENST00000262375 2763 ntAPPRIS P3 TSL 1 (best) BASIC16.8■□□□□ 0.28
COL4A4P53420 AC138028.6-201ENST00000616106 1482 ntBASIC16.8■□□□□ 0.28
COL4A4P53420 BFSP2-201ENST00000302334 1558 ntAPPRIS P1 TSL 1 (best) BASIC16.8■□□□□ 0.28
COL4A4P53420 EPB41L4B-201ENST00000374557 4006 ntAPPRIS ALT2 TSL 1 (best) BASIC16.8■□□□□ 0.28
COL4A4P53420 LINC01118-203ENST00000479311 1588 ntTSL 1 (best) BASIC16.8■□□□□ 0.28
COL4A4P53420 AL607033.1-201ENST00000623900 1599 ntBASIC16.8■□□□□ 0.28
COL4A4P53420 SBNO2-201ENST00000361757 4923 ntAPPRIS P4 TSL 1 (best) BASIC16.8■□□□□ 0.28
COL4A4P53420 CTSB-228ENST00000533455 2009 ntAPPRIS P1 TSL 1 (best) BASIC16.8■□□□□ 0.28
COL4A4P53420 ERP29-203ENST00000546477 1698 ntTSL 3 BASIC16.8■□□□□ 0.28
COL4A4P53420 MBD1-210ENST00000457839 2473 ntAPPRIS ALT2 TSL 2 BASIC16.8■□□□□ 0.28
COL4A4P53420 AL603832.2-201ENST00000566195 2125 ntBASIC16.8■□□□□ 0.28
COL4A4P53420 ARHGEF7-202ENST00000317133 4361 ntAPPRIS ALT2 TSL 1 (best) BASIC16.8■□□□□ 0.28
COL4A4P53420 PPP2R1B-203ENST00000393055 1525 ntTSL 2 BASIC16.8■□□□□ 0.28
COL4A4P53420 TMEM214-201ENST00000238788 2990 ntAPPRIS P1 TSL 1 (best) BASIC16.8■□□□□ 0.28
COL4A4P53420 RPS3-201ENST00000278572 907 ntTSL 3 BASIC16.8■□□□□ 0.28
COL4A4P53420 RGS10-202ENST00000369103 804 ntAPPRIS P3 TSL 1 (best) BASIC16.8■□□□□ 0.28
COL4A4P53420 MIR1202-201ENST00000408529 83 ntBASIC16.8■□□□□ 0.28
COL4A4P53420 AL451042.2-201ENST00000424774 904 ntTSL 2 BASIC16.8■□□□□ 0.28
COL4A4P53420 KRT18P43-201ENST00000469825 1281 ntBASIC16.8■□□□□ 0.28
COL4A4P53420 PCOLCE2-208ENST00000485766 1088 ntTSL 5 BASIC16.8■□□□□ 0.28
COL4A4P53420 AC009486.1-201ENST00000569860 813 ntBASIC16.8■□□□□ 0.28
COL4A4P53420 NAT9-224ENST00000583757 583 ntTSL 3 BASIC16.8■□□□□ 0.28
COL4A4P53420 AC005523.1-201ENST00000598782 418 ntTSL 5 BASIC16.8■□□□□ 0.28
COL4A4P53420 AC000095.1-201ENST00000603208 874 ntBASIC16.8■□□□□ 0.28
COL4A4P53420 AL096828.3-201ENST00000615354 462 ntBASIC16.8■□□□□ 0.28
COL4A4P53420 PRMT5-203ENST00000397440 1907 ntTSL 1 (best) BASIC16.8■□□□□ 0.28
COL4A4P53420 WSCD1-208ENST00000573634 1573 ntTSL 1 (best) BASIC16.8■□□□□ 0.28
COL4A4P53420 C14orf93-202ENST00000341470 2221 ntTSL 1 (best) BASIC16.8■□□□□ 0.28
COL4A4P53420 DYRK3-201ENST00000367106 2329 ntTSL 1 (best) BASIC16.8■□□□□ 0.28
COL4A4P53420 ZNF74-202ENST00000400451 3159 ntAPPRIS P2 TSL 1 (best) BASIC16.8■□□□□ 0.28
COL4A4P53420 C11orf24-201ENST00000304271 2063 ntAPPRIS P3 TSL 1 (best) BASIC16.8■□□□□ 0.28
COL4A4P53420 GRB7-205ENST00000445327 2197 ntTSL 2 BASIC16.8■□□□□ 0.28
COL4A4P53420 AC026691.1-201ENST00000602502 2017 ntBASIC16.79■□□□□ 0.28
COL4A4P53420 ABHD18-203ENST00000444616 2129 ntAPPRIS P1 TSL 5 BASIC16.79■□□□□ 0.28
COL4A4P53420 ACSF3-204ENST00000406948 2247 ntAPPRIS P1 TSL 2 BASIC16.79■□□□□ 0.28
COL4A4P53420 DAP-201ENST00000230895 2339 ntAPPRIS P1 TSL 1 (best) BASIC16.79■□□□□ 0.28
COL4A4P53420 ABHD2-207ENST00000565973 2347 ntAPPRIS P1 TSL 5 BASIC16.79■□□□□ 0.28
COL4A4P53420 LINC00200-201ENST00000425630 2434 ntTSL 1 (best) BASIC16.79■□□□□ 0.28
COL4A4P53420 PELI3-209ENST00000618547 2508 ntTSL 2 BASIC16.79■□□□□ 0.28
COL4A4P53420 BBS2-218ENST00000568104 2623 ntTSL 5 BASIC16.79■□□□□ 0.28
COL4A4P53420 CSH2-201ENST00000336844 1173 ntTSL 2 BASIC16.79■□□□□ 0.28
COL4A4P53420 CSH2-202ENST00000345366 598 ntTSL 5 BASIC16.79■□□□□ 0.28
COL4A4P53420 AL157392.3-216ENST00000437446 462 ntTSL 3 BASIC16.79■□□□□ 0.28
COL4A4P53420 AC096536.1-201ENST00000443284 440 ntTSL 2 BASIC16.79■□□□□ 0.28
COL4A4P53420 SDHD-202ENST00000525291 790 ntTSL 3 BASIC16.79■□□□□ 0.28
COL4A4P53420 RPL28-208ENST00000559463 852 ntAPPRIS P1 TSL 1 (best) BASIC16.79■□□□□ 0.28
COL4A4P53420 TUBB8-202ENST00000562809 820 ntTSL 5 BASIC16.79■□□□□ 0.28
COL4A4P53420 TNNT1-212ENST00000588981 1163 ntAPPRIS P3 TSL 1 (best) BASIC16.79■□□□□ 0.28
COL4A4P53420 MFSD11-218ENST00000591864 446 ntTSL 1 (best) BASIC16.79■□□□□ 0.28
COL4A4P53420 AC020914.3-201ENST00000594712 304 ntBASIC16.79■□□□□ 0.28
COL4A4P53420 KATNA1-201ENST00000335643 1564 ntTSL 1 (best) BASIC16.79■□□□□ 0.28
COL4A4P53420 AL596087.1-201ENST00000400979 1969 ntBASIC16.79■□□□□ 0.28
COL4A4P53420 AC024909.3-201ENST00000611513 2257 ntBASIC16.79■□□□□ 0.28
COL4A4P53420 AC124067.4-201ENST00000519691 2379 ntBASIC16.79■□□□□ 0.28
COL4A4P53420 LRRC59-201ENST00000225972 2910 ntAPPRIS P1 TSL 1 (best) BASIC16.79■□□□□ 0.28
COL4A4P53420 CBSL-201ENST00000398168 2514 ntAPPRIS P1 TSL 1 (best) BASIC16.79■□□□□ 0.28
COL4A4P53420 WT1-209ENST00000530998 2421 ntTSL 2 BASIC16.79■□□□□ 0.28
COL4A4P53420 MSI2-204ENST00000442934 1624 ntTSL 2 BASIC16.79■□□□□ 0.28
COL4A4P53420 ANKRD33-202ENST00000340970 1507 ntAPPRIS P1 TSL 1 (best) BASIC16.79■□□□□ 0.28
COL4A4P53420 TMTC4-203ENST00000376234 3483 ntAPPRIS P1 TSL 1 (best) BASIC16.79■□□□□ 0.28
COL4A4P53420 KCNQ2-236ENST00000637193 2983 ntTSL 5 BASIC16.79■□□□□ 0.28
COL4A4P53420 CLCN2-204ENST00000434054 2897 ntAPPRIS ALT2 TSL 2 BASIC16.79■□□□□ 0.28
COL4A4P53420 SLC27A5-201ENST00000263093 2361 ntAPPRIS P3 TSL 1 (best) BASIC16.79■□□□□ 0.28
COL4A4P53420 AADAT-208ENST00000515480 2193 ntAPPRIS P3 TSL 1 (best) BASIC16.79■□□□□ 0.28
COL4A4P53420 AP1AR-201ENST00000274000 2902 ntAPPRIS P3 TSL 1 (best) BASIC16.79■□□□□ 0.28
COL4A4P53420 LDLRAP1-201ENST00000374338 2940 ntAPPRIS P1 TSL 1 (best) BASIC16.79■□□□□ 0.28
COL4A4P53420 AP1M1-202ENST00000429941 1578 ntTSL 2 BASIC16.79■□□□□ 0.28
COL4A4P53420 EIF4H-202ENST00000353999 2503 ntAPPRIS ALT1 TSL 1 (best) BASIC16.79■□□□□ 0.28
COL4A4P53420 CD209-207ENST00000593660 1497 ntAPPRIS ALT2 TSL 1 (best) BASIC16.79■□□□□ 0.28
COL4A4P53420 COL23A1-202ENST00000407622 2329 ntAPPRIS ALT2 TSL 5 BASIC16.78■□□□□ 0.28
COL4A4P53420 SYVN1-203ENST00000377190 3052 ntTSL 1 (best) BASIC16.78■□□□□ 0.28
COL4A4P53420 DMAC2-202ENST00000301183 1134 ntTSL 2 BASIC16.78■□□□□ 0.28
COL4A4P53420 GOLIM4-201ENST00000309027 2100 ntTSL 1 (best) BASIC16.78■□□□□ 0.28
COL4A4P53420 BRF1-202ENST00000379932 884 ntTSL 5 BASIC16.78■□□□□ 0.28
COL4A4P53420 AC104457.1-201ENST00000401024 814 ntBASIC16.78■□□□□ 0.28
COL4A4P53420 BTBD6P1-201ENST00000412176 1267 ntBASIC16.78■□□□□ 0.28
COL4A4P53420 DUSP13-205ENST00000464872 684 ntTSL 3 BASIC16.78■□□□□ 0.28
COL4A4P53420 TSACC-208ENST00000481479 741 ntTSL 2 BASIC16.78■□□□□ 0.28
COL4A4P53420 TMEM198B-204ENST00000484016 896 ntBASIC16.78■□□□□ 0.28
COL4A4P53420 SSTR5-AS1-201ENST00000565992 575 ntTSL 4 BASIC16.78■□□□□ 0.28
Retrieved 100 of 98,524 protein–RNA pairs in 30.9 ms