Protein–RNA interactions for Protein: P49916

LIG3, DNA ligase 3, humanhuman

Predictions only

Length 1,009 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
LIG3P49916 SYBU-207ENST00000433638 3104 ntAPPRIS ALT2 TSL 5 BASIC16.93■□□□□ 0.3
LIG3P49916 PSMC3IP-204ENST00000587209 1381 ntTSL 1 (best) BASIC16.93■□□□□ 0.3
LIG3P49916 ADGRA1-202ENST00000392607 4283 ntAPPRIS P2 TSL 5 BASIC16.93■□□□□ 0.3
LIG3P49916 AIFM1-201ENST00000287295 2260 ntAPPRIS P4 TSL 1 (best) BASIC16.93■□□□□ 0.3
LIG3P49916 TOM1-206ENST00000425375 2252 ntTSL 2 BASIC16.93■□□□□ 0.3
LIG3P49916 ATG13-216ENST00000530500 2030 ntTSL 2 BASIC16.93■□□□□ 0.3
LIG3P49916 EPHX1-206ENST00000614058 1789 ntAPPRIS P1 TSL 1 (best) BASIC16.93■□□□□ 0.3
LIG3P49916 TOMM40-207ENST00000592434 3415 ntAPPRIS ALT2 TSL 2 BASIC16.93■□□□□ 0.3
LIG3P49916 SPACA4-201ENST00000321762 972 ntAPPRIS P1 BASIC16.93■□□□□ 0.3
LIG3P49916 NPB-201ENST00000333383 704 ntAPPRIS P2 TSL 1 (best) BASIC16.93■□□□□ 0.3
LIG3P49916 ASTL-201ENST00000342380 1296 ntAPPRIS P1 TSL 1 (best) BASIC16.93■□□□□ 0.3
LIG3P49916 ANP32E-201ENST00000369114 1048 ntTSL 3 BASIC16.93■□□□□ 0.3
LIG3P49916 HMGN4-201ENST00000377575 1225 ntAPPRIS P1 TSL 1 (best) BASIC16.93■□□□□ 0.3
LIG3P49916 HIST1H2BD-202ENST00000377777 496 ntAPPRIS P1 BASIC16.93■□□□□ 0.3
LIG3P49916 DDT-204ENST00000404092 805 ntTSL 3 BASIC16.93■□□□□ 0.3
LIG3P49916 JMJD7-203ENST00000408047 1192 ntTSL 5 BASIC16.93■□□□□ 0.3
LIG3P49916 Z97056.1-201ENST00000433230 556 ntTSL 2 BASIC16.93■□□□□ 0.3
LIG3P49916 DHDH-204ENST00000523250 634 ntTSL 5 BASIC16.93■□□□□ 0.3
LIG3P49916 TRAF3IP2-AS1-208ENST00000525151 609 ntTSL 1 (best) BASIC16.93■□□□□ 0.3
LIG3P49916 JPH4-203ENST00000544177 1124 ntTSL 2 BASIC16.93■□□□□ 0.3
LIG3P49916 DUX4L17-201ENST00000557360 1267 ntBASIC16.93■□□□□ 0.3
LIG3P49916 BSG-214ENST00000614867 960 ntTSL 3 BASIC16.93■□□□□ 0.3
LIG3P49916 MED16-214ENST00000617672 554 ntTSL 5 BASIC16.93■□□□□ 0.3
LIG3P49916 C20orf181-201ENST00000623918 480 ntBASIC16.93■□□□□ 0.3
LIG3P49916 SERPINE2-202ENST00000409304 2161 ntAPPRIS ALT1 TSL 1 (best) BASIC16.93■□□□□ 0.3
LIG3P49916 STXBP5-207ENST00000546097 2160 ntTSL 1 (best) BASIC16.93■□□□□ 0.3
LIG3P49916 PLEKHA4-201ENST00000263265 3088 ntAPPRIS P1 TSL 1 (best) BASIC16.93■□□□□ 0.3
LIG3P49916 WDR53-201ENST00000332629 1679 ntAPPRIS P1 TSL 1 (best) BASIC16.93■□□□□ 0.3
LIG3P49916 AC099508.1-201ENST00000499110 1666 ntTSL 4 BASIC16.93■□□□□ 0.3
LIG3P49916 TRPV4-201ENST00000261740 3233 ntAPPRIS P1 TSL 1 (best) BASIC16.93■□□□□ 0.3
LIG3P49916 IPPK-201ENST00000287996 4401 ntAPPRIS P1 TSL 1 (best) BASIC16.93■□□□□ 0.3
LIG3P49916 TPM1-205ENST00000357980 1800 ntTSL 2 BASIC16.93■□□□□ 0.3
LIG3P49916 BANP-217ENST00000479780 1551 ntTSL 1 (best) BASIC16.93■□□□□ 0.3
LIG3P49916 SLC6A13-203ENST00000445055 1950 ntTSL 2 BASIC16.93■□□□□ 0.3
LIG3P49916 HSPH1-201ENST00000320027 5191 ntAPPRIS P1 TSL 1 (best) BASIC16.93■□□□□ 0.3
LIG3P49916 MAPT-201ENST00000262410 6762 ntAPPRIS P4 TSL 1 (best) BASIC16.93■□□□□ 0.3
LIG3P49916 AL161772.1-201ENST00000610494 4412 ntBASIC16.93■□□□□ 0.3
LIG3P49916 ANKRD26-201ENST00000376087 6591 ntAPPRIS P2 TSL 5 BASIC16.93■□□□□ 0.3
LIG3P49916 PKIA-202ENST00000396418 4163 ntAPPRIS P1 TSL 2 BASIC16.92■□□□□ 0.3
LIG3P49916 SUPT20HL2-201ENST00000486479 2409 ntBASIC16.92■□□□□ 0.3
LIG3P49916 CLDN22-201ENST00000323319 2581 ntAPPRIS P1 BASIC16.92■□□□□ 0.3
LIG3P49916 KATNBL1-201ENST00000256544 2723 ntAPPRIS P1 TSL 1 (best) BASIC16.92■□□□□ 0.3
LIG3P49916 CICP24-201ENST00000605464 2705 ntBASIC16.92■□□□□ 0.3
LIG3P49916 PSMD9-201ENST00000261817 2307 ntAPPRIS ALT1 TSL 2 BASIC16.92■□□□□ 0.3
LIG3P49916 TGIF2-202ENST00000373874 3432 ntAPPRIS P1 TSL 2 BASIC16.92■□□□□ 0.3
LIG3P49916 DUS3L-202ENST00000320699 1355 ntAPPRIS ALT2 TSL 1 (best) BASIC16.92■□□□□ 0.3
LIG3P49916 CLDN6-201ENST00000328796 1369 ntAPPRIS P1 TSL 1 (best) BASIC16.92■□□□□ 0.3
LIG3P49916 TOP3BP1-201ENST00000420768 1380 ntBASIC16.92■□□□□ 0.3
LIG3P49916 AL590627.1-201ENST00000626603 1910 ntTSL 2 BASIC16.92■□□□□ 0.3
LIG3P49916 CYP4F22-201ENST00000269703 2641 ntAPPRIS P1 TSL 2 BASIC16.92■□□□□ 0.3
LIG3P49916 RSRP1-201ENST00000243189 1502 ntAPPRIS P2 TSL 1 (best) BASIC16.92■□□□□ 0.3
LIG3P49916 COQ6-220ENST00000629426 1538 ntTSL 5 BASIC16.92■□□□□ 0.3
LIG3P49916 TGIF1-205ENST00000401449 1670 ntTSL 2 BASIC16.92■□□□□ 0.3
LIG3P49916 GRSF1-208ENST00000545193 2682 ntTSL 2 BASIC16.92■□□□□ 0.3
LIG3P49916 KLF4-201ENST00000374672 2813 ntAPPRIS P1 TSL 1 (best) BASIC16.92■□□□□ 0.3
LIG3P49916 FNDC11-202ENST00000370098 1112 ntAPPRIS P1 TSL 1 (best) BASIC16.92■□□□□ 0.3
LIG3P49916 PNRC2-202ENST00000374468 814 ntAPPRIS P1 TSL 2 BASIC16.92■□□□□ 0.3
LIG3P49916 SELENOH-201ENST00000388857 833 ntAPPRIS P2 TSL 1 (best) BASIC16.92■□□□□ 0.3
LIG3P49916 COA5-202ENST00000409997 557 ntTSL 4 BASIC16.92■□□□□ 0.3
LIG3P49916 LINC01705-201ENST00000438158 562 ntTSL 2 BASIC16.92■□□□□ 0.3
LIG3P49916 ALG1L5P-201ENST00000482043 771 ntBASIC16.92■□□□□ 0.3
LIG3P49916 NT5C3B-215ENST00000521789 993 ntTSL 3 BASIC16.92■□□□□ 0.3
LIG3P49916 MMP17-203ENST00000535004 719 ntTSL 3 BASIC16.92■□□□□ 0.3
LIG3P49916 AC005829.1-201ENST00000570002 483 ntBASIC16.92■□□□□ 0.3
LIG3P49916 AC005412.3-201ENST00000580309 715 ntBASIC16.92■□□□□ 0.3
LIG3P49916 AC005256.1-202ENST00000592934 415 ntTSL 2 BASIC16.92■□□□□ 0.3
LIG3P49916 AL078644.1-201ENST00000609881 752 ntBASIC16.92■□□□□ 0.3
LIG3P49916 AL121832.1-201ENST00000615180 677 ntTSL 3 BASIC16.92■□□□□ 0.3
LIG3P49916 MED20-201ENST00000265350 2438 ntAPPRIS P1 TSL 1 (best) BASIC16.92■□□□□ 0.3
LIG3P49916 NRBP1-201ENST00000233557 2887 ntAPPRIS P1 TSL 2 BASIC16.92■□□□□ 0.3
LIG3P49916 SNX14-202ENST00000346348 3348 ntAPPRIS ALT2 TSL 1 (best) BASIC16.92■□□□□ 0.3
LIG3P49916 ZNF385A-201ENST00000338010 2331 ntAPPRIS P1 TSL 1 (best) BASIC16.92■□□□□ 0.3
LIG3P49916 RSPH6A-202ENST00000597055 2306 ntAPPRIS ALT2 TSL 1 (best) BASIC16.92■□□□□ 0.3
LIG3P49916 MIR137HG-202ENST00000424528 2639 ntTSL 2 BASIC16.92■□□□□ 0.3
LIG3P49916 ANKLE1-201ENST00000394458 3218 ntAPPRIS P1 TSL 1 (best) BASIC16.92■□□□□ 0.3
LIG3P49916 KCNT1-207ENST00000487664 3845 ntAPPRIS ALT2 TSL 5 BASIC16.92■□□□□ 0.3
LIG3P49916 REM2-202ENST00000536884 1331 ntTSL 2 BASIC16.92■□□□□ 0.3
LIG3P49916 CSNK2A1-203ENST00000400217 1451 ntTSL 2 BASIC16.92■□□□□ 0.3
LIG3P49916 FANCA-203ENST00000389302 1641 ntTSL 1 (best) BASIC16.92■□□□□ 0.3
LIG3P49916 DPEP1-203ENST00000421184 1647 ntAPPRIS P1 TSL 5 BASIC16.92■□□□□ 0.3
LIG3P49916 AC068944.1-201ENST00000514855 1604 ntTSL 2 BASIC16.92■□□□□ 0.3
LIG3P49916 AC005089.1-201ENST00000619486 2241 ntBASIC16.92■□□□□ 0.3
LIG3P49916 ACOX3-202ENST00000413009 2374 ntTSL 1 (best) BASIC16.92■□□□□ 0.3
LIG3P49916 MCFD2-201ENST00000319466 4182 ntAPPRIS P1 TSL 1 (best) BASIC16.92■□□□□ 0.3
LIG3P49916 TNKS1BP1-207ENST00000532437 5952 ntAPPRIS P2 TSL 1 (best) BASIC16.92■□□□□ 0.3
LIG3P49916 AC007686.3-201ENST00000619017 3487 ntBASIC16.91■□□□□ 0.3
LIG3P49916 VWA7-201ENST00000375688 2881 ntAPPRIS P1 TSL 5 BASIC16.91■□□□□ 0.3
LIG3P49916 LILRP2-201ENST00000413439 2127 ntTSL 1 (best) BASIC16.91■□□□□ 0.3
LIG3P49916 LGALS3BP-218ENST00000591778 1961 ntTSL 2 BASIC16.91■□□□□ 0.3
LIG3P49916 DPM2-201ENST00000314392 1542 ntAPPRIS P1 TSL 1 (best) BASIC16.91■□□□□ 0.3
LIG3P49916 AL021920.2-201ENST00000624828 1351 ntBASIC16.91■□□□□ 0.3
LIG3P49916 CEP170B-203ENST00000453495 6813 ntAPPRIS ALT2 TSL 5 BASIC16.91■□□□□ 0.3
LIG3P49916 GRB7-205ENST00000445327 2197 ntTSL 2 BASIC16.91■□□□□ 0.3
LIG3P49916 LSP1-202ENST00000381775 2016 ntAPPRIS ALT2 TSL 2 BASIC16.91■□□□□ 0.3
LIG3P49916 AL391256.1-201ENST00000443260 1855 ntBASIC16.91■□□□□ 0.3
LIG3P49916 PIGT-257ENST00000640210 1715 ntTSL 5 BASIC16.91■□□□□ 0.3
LIG3P49916 ALDH3A2-225ENST00000630662 1558 ntTSL 5 BASIC16.91■□□□□ 0.3
LIG3P49916 KCNC3-202ENST00000474951 3347 ntTSL 2 BASIC16.91■□□□□ 0.3
LIG3P49916 CENPT-202ENST00000440851 2200 ntAPPRIS P2 TSL 5 BASIC16.91■□□□□ 0.3
LIG3P49916 AC013270.1-201ENST00000425578 440 ntTSL 2 BASIC16.91■□□□□ 0.3
Retrieved 100 of 98,524 protein–RNA pairs in 51.1 ms