Protein–RNA interactions for Protein: P48742

LHX1, LIM/homeobox protein Lhx1, humanhuman

Predictions only

Length 406 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
LHX1P48742 AC074338.1-201ENST00000416825 156 ntBASIC16.89■□□□□ 0.29
LHX1P48742 AC015922.1-201ENST00000421102 1152 ntBASIC16.89■□□□□ 0.29
LHX1P48742 FAM197Y5-201ENST00000423213 765 ntTSL 5 BASIC16.89■□□□□ 0.29
LHX1P48742 AL160313.1-201ENST00000502101 1039 ntTSL 1 (best) BASIC16.89■□□□□ 0.29
LHX1P48742 CLDND1-222ENST00000510545 2124 ntAPPRIS P1 TSL 5 BASIC16.89■□□□□ 0.29
LHX1P48742 SERF1B-208ENST00000515588 792 ntTSL 2 BASIC16.89■□□□□ 0.29
LHX1P48742 SCN4B-204ENST00000529878 566 ntTSL 4 BASIC16.89■□□□□ 0.29
LHX1P48742 AC079296.1-201ENST00000531592 560 ntTSL 3 BASIC16.89■□□□□ 0.29
LHX1P48742 MARCH2-206ENST00000601283 747 ntTSL 3 BASIC16.89■□□□□ 0.29
LHX1P48742 AC097359.3-201ENST00000603982 1210 ntBASIC16.89■□□□□ 0.29
LHX1P48742 LINC01115-203ENST00000606068 577 ntBASIC16.89■□□□□ 0.29
LHX1P48742 AC004790.1-201ENST00000612686 536 ntBASIC16.89■□□□□ 0.29
LHX1P48742 ARHGAP22-201ENST00000249601 2751 ntAPPRIS P3 TSL 1 (best) BASIC16.89■□□□□ 0.29
LHX1P48742 IL11RA-202ENST00000441545 1700 ntAPPRIS P1 TSL 5 BASIC16.89■□□□□ 0.29
LHX1P48742 PIP4K2C-207ENST00000550465 1532 ntTSL 2 BASIC16.89■□□□□ 0.29
LHX1P48742 PKP4-AS1-203ENST00000629904 1951 ntTSL 5 BASIC16.89■□□□□ 0.29
LHX1P48742 STAT5A-207ENST00000546010 3086 ntTSL 1 (best) BASIC16.89■□□□□ 0.29
LHX1P48742 GPR158-AS1-201ENST00000449643 2433 ntTSL 2 BASIC16.89■□□□□ 0.29
LHX1P48742 INTS14-209ENST00000567744 2419 ntTSL 2 BASIC16.89■□□□□ 0.29
LHX1P48742 URAHP-202ENST00000409873 1349 ntTSL 1 (best) BASIC16.89■□□□□ 0.29
LHX1P48742 SLK-202ENST00000369755 7766 ntAPPRIS P1 TSL 1 (best) BASIC16.89■□□□□ 0.29
LHX1P48742 TCF3-212ENST00000588136 2658 ntAPPRIS ALT2 TSL 2 BASIC16.89■□□□□ 0.29
LHX1P48742 C1orf43-202ENST00000362076 1551 ntTSL 1 (best) BASIC16.89■□□□□ 0.29
LHX1P48742 HSPA1A-201ENST00000375651 2483 ntAPPRIS P1 BASIC16.89■□□□□ 0.29
LHX1P48742 ITPK1-210ENST00000556603 3174 ntAPPRIS P1 TSL 1 (best) BASIC16.89■□□□□ 0.29
LHX1P48742 PLXND1-201ENST00000324093 7094 ntAPPRIS P1 TSL 1 (best) BASIC16.89■□□□□ 0.29
LHX1P48742 CDC42BPG-201ENST00000342711 5742 ntAPPRIS P1 TSL 1 (best) BASIC16.89■□□□□ 0.29
LHX1P48742 SLC7A15P-201ENST00000424028 1363 ntBASIC16.89■□□□□ 0.29
LHX1P48742 TDH-201ENST00000525246 1357 ntTSL 1 (best) BASIC16.89■□□□□ 0.29
LHX1P48742 PDAP1-201ENST00000350498 2546 ntAPPRIS P1 TSL 1 (best) BASIC16.89■□□□□ 0.29
LHX1P48742 STK4-AS1-201ENST00000434401 2065 ntTSL 2 BASIC16.89■□□□□ 0.29
LHX1P48742 AC069281.2-201ENST00000485071 4401 ntTSL 2 BASIC16.88■□□□□ 0.29
LHX1P48742 PARP12-201ENST00000263549 3796 ntAPPRIS P1 TSL 1 (best) BASIC16.88■□□□□ 0.29
LHX1P48742 ABHD18-203ENST00000444616 2129 ntAPPRIS P1 TSL 5 BASIC16.88■□□□□ 0.29
LHX1P48742 DEK-201ENST00000244776 1441 ntTSL 2 BASIC16.88■□□□□ 0.29
LHX1P48742 CBLC-202ENST00000341505 1441 ntTSL 1 (best) BASIC16.88■□□□□ 0.29
LHX1P48742 FBXO18-203ENST00000397269 3640 ntTSL 5 BASIC16.88■□□□□ 0.29
LHX1P48742 GRB7-205ENST00000445327 2197 ntTSL 2 BASIC16.88■□□□□ 0.29
LHX1P48742 ATP2C1-218ENST00000510168 5067 ntAPPRIS ALT1 TSL 5 BASIC16.88■□□□□ 0.29
LHX1P48742 LINC00200-201ENST00000425630 2434 ntTSL 1 (best) BASIC16.88■□□□□ 0.29
LHX1P48742 WNT2-201ENST00000265441 2907 ntAPPRIS P1 TSL 1 (best) BASIC16.88■□□□□ 0.29
LHX1P48742 ABHD11-201ENST00000222800 1483 ntAPPRIS P3 TSL 1 (best) BASIC16.88■□□□□ 0.29
LHX1P48742 LSMEM2-201ENST00000316436 1494 ntAPPRIS P1 TSL 1 (best) BASIC16.88■□□□□ 0.29
LHX1P48742 VASH1-203ENST00000554237 1462 ntTSL 1 (best) BASIC16.88■□□□□ 0.29
LHX1P48742 EIF4G3-212ENST00000602326 6196 ntAPPRIS ALT2 TSL 1 (best) BASIC16.88■□□□□ 0.29
LHX1P48742 SLC8B1-210ENST00000550047 2493 ntTSL 2 BASIC16.88■□□□□ 0.29
LHX1P48742 TBC1D28-201ENST00000345096 2789 ntAPPRIS P1 TSL 2 BASIC16.88■□□□□ 0.29
LHX1P48742 TRMT44-201ENST00000389737 2799 ntAPPRIS P2 TSL 5 BASIC16.88■□□□□ 0.29
LHX1P48742 BLK-205ENST00000529894 2017 ntTSL 5 BASIC16.88■□□□□ 0.29
LHX1P48742 SPATA21-205ENST00000540400 1773 ntAPPRIS ALT2 TSL 1 (best) BASIC16.88■□□□□ 0.29
LHX1P48742 PDE6G-204ENST00000573076 1505 ntTSL 1 (best) BASIC16.88■□□□□ 0.29
LHX1P48742 ISCA1-201ENST00000311534 813 ntTSL 2 BASIC16.88■□□□□ 0.29
LHX1P48742 NTMT1-201ENST00000372480 852 ntAPPRIS P1 TSL 3 BASIC16.88■□□□□ 0.29
LHX1P48742 RTN4RL2-202ENST00000395120 582 ntTSL 1 (best) BASIC16.88■□□□□ 0.29
LHX1P48742 AC073283.1-201ENST00000421759 860 ntTSL 3 BASIC16.88■□□□□ 0.29
LHX1P48742 USP40-206ENST00000443711 628 ntTSL 2 BASIC16.88■□□□□ 0.29
LHX1P48742 AL589987.1-201ENST00000453380 819 ntBASIC16.88■□□□□ 0.29
LHX1P48742 RHOA-206ENST00000454011 889 ntTSL 2 BASIC16.88■□□□□ 0.29
LHX1P48742 TMEM176B-206ENST00000492607 1265 ntAPPRIS P1 TSL 5 BASIC16.88■□□□□ 0.29
LHX1P48742 RCHY1-210ENST00000513257 759 ntTSL 1 (best) BASIC16.88■□□□□ 0.29
LHX1P48742 NEIL2-207ENST00000528323 998 ntTSL 2 BASIC16.88■□□□□ 0.29
LHX1P48742 AC055876.2-201ENST00000531834 546 ntBASIC16.88■□□□□ 0.29
LHX1P48742 API5-211ENST00000534695 560 ntTSL 5 BASIC16.88■□□□□ 0.29
LHX1P48742 AC123777.1-201ENST00000534827 1247 ntTSL 3 BASIC16.88■□□□□ 0.29
LHX1P48742 YEATS4-202ENST00000548020 1100 ntTSL 2 BASIC16.88■□□□□ 0.29
LHX1P48742 AC005391.1-201ENST00000613285 341 ntTSL 3 BASIC16.88■□□□□ 0.29
LHX1P48742 WASHC2C-204ENST00000374362 4623 ntAPPRIS P3 TSL 1 (best) BASIC16.88■□□□□ 0.29
LHX1P48742 PLPPR5-202ENST00000370188 4139 ntAPPRIS ALT1 TSL 1 (best) BASIC16.88■□□□□ 0.29
LHX1P48742 U73166.1-201ENST00000439898 2625 ntTSL 1 (best) BASIC16.88■□□□□ 0.29
LHX1P48742 PAX6-276ENST00000640684 1557 ntTSL 5 BASIC16.88■□□□□ 0.29
LHX1P48742 C15orf62-201ENST00000344320 2370 ntAPPRIS P1 BASIC16.88■□□□□ 0.29
LHX1P48742 HOXB3-205ENST00000470495 4208 ntAPPRIS P1 TSL 1 (best) BASIC16.88■□□□□ 0.29
LHX1P48742 RPS28-203ENST00000600659 1326 ntAPPRIS P1 TSL 1 (best) BASIC16.88■□□□□ 0.29
LHX1P48742 SCUBE2-202ENST00000450649 2912 ntTSL 1 (best) BASIC16.88■□□□□ 0.29
LHX1P48742 LRRC3-201ENST00000291592 5869 ntAPPRIS P1 TSL 1 (best) BASIC16.88■□□□□ 0.29
LHX1P48742 ARMC5-203ENST00000457010 4844 ntAPPRIS P3 TSL 1 (best) BASIC16.88■□□□□ 0.29
LHX1P48742 KCNJ12-201ENST00000331718 2198 ntAPPRIS P1 TSL 1 (best) BASIC16.88■□□□□ 0.29
LHX1P48742 TANK-202ENST00000392749 2171 ntAPPRIS P1 TSL 1 (best) BASIC16.88■□□□□ 0.29
LHX1P48742 AP003397.1-201ENST00000525706 1387 ntTSL 1 (best) BASIC16.88■□□□□ 0.29
LHX1P48742 DMAC2-201ENST00000221943 1692 ntAPPRIS P1 TSL 2 BASIC16.88■□□□□ 0.29
LHX1P48742 G6PD-203ENST00000393564 1661 ntAPPRIS ALT2 TSL 5 BASIC16.88■□□□□ 0.29
LHX1P48742 LEF1-201ENST00000265165 3068 ntAPPRIS P3 TSL 1 (best) BASIC16.88■□□□□ 0.29
LHX1P48742 SLC25A45-202ENST00000398802 2286 ntAPPRIS P1 TSL 5 BASIC16.87■□□□□ 0.29
LHX1P48742 TSC2-222ENST00000568454 5434 ntAPPRIS ALT2 TSL 2 BASIC16.87■□□□□ 0.29
LHX1P48742 ZNF281-201ENST00000294740 4891 ntAPPRIS P3 TSL 1 (best) BASIC16.87■□□□□ 0.29
LHX1P48742 DMRTC2-201ENST00000269945 1792 ntAPPRIS P1 TSL 1 (best) BASIC16.87■□□□□ 0.29
LHX1P48742 BRSK2-204ENST00000526678 2091 ntAPPRIS ALT2 TSL 1 (best) BASIC16.87■□□□□ 0.29
LHX1P48742 SENP6-205ENST00000447266 6501 ntAPPRIS ALT2 TSL 1 (best) BASIC16.87■□□□□ 0.29
LHX1P48742 MYH14-203ENST00000425460 6811 ntAPPRIS P3 TSL 5 BASIC16.87■□□□□ 0.29
LHX1P48742 RGS6-210ENST00000553530 5685 ntAPPRIS P3 TSL 1 (best) BASIC16.87■□□□□ 0.29
LHX1P48742 PDE12-202ENST00000487257 3040 ntTSL 1 (best) BASIC16.87■□□□□ 0.29
LHX1P48742 AC018892.3-201ENST00000623986 2499 ntBASIC16.87■□□□□ 0.29
LHX1P48742 TMC3-AS1-203ENST00000559781 2195 ntTSL 3 BASIC16.87■□□□□ 0.29
LHX1P48742 ACSM1-204ENST00000520010 1894 ntAPPRIS P1 TSL 1 (best) BASIC16.87■□□□□ 0.29
LHX1P48742 CMKLR1-206ENST00000552995 1890 ntAPPRIS P3 TSL 1 (best) BASIC16.87■□□□□ 0.29
LHX1P48742 LAMC1-201ENST00000258341 7889 ntAPPRIS P1 TSL 1 (best) BASIC16.87■□□□□ 0.29
LHX1P48742 COLEC11-209ENST00000418971 1595 ntTSL 2 BASIC16.87■□□□□ 0.29
LHX1P48742 TFF2-201ENST00000291526 737 ntAPPRIS P1 TSL 1 (best) BASIC16.87■□□□□ 0.29
LHX1P48742 ACTA1-201ENST00000366683 1122 ntTSL 5 BASIC16.87■□□□□ 0.29
LHX1P48742 ING1-204ENST00000375775 1074 ntTSL 1 (best) BASIC16.87■□□□□ 0.29
Retrieved 100 of 98,524 protein–RNA pairs in 51.6 ms