Protein–RNA interactions for Protein: P39880

CUX1, Homeobox protein cut-like 1, humanhuman

Predictions only

Length 1,505 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
CUX1P39880 CTSD-213ENST00000637915 1982 ntAPPRIS ALT2 TSL 5 BASIC26.19■■□□□ 1.78
CUX1P39880 SLC29A2-202ENST00000357440 2514 ntAPPRIS P1 TSL 1 (best) BASIC26.19■■□□□ 1.78
CUX1P39880 SLC29A2-205ENST00000544554 2505 ntAPPRIS P1 TSL 2 BASIC26.19■■□□□ 1.78
CUX1P39880 CYP46A1-201ENST00000261835 2181 ntAPPRIS P1 TSL 1 (best) BASIC26.19■■□□□ 1.78
CUX1P39880 ECHDC1-214ENST00000474289 2443 ntAPPRIS P3 TSL 5 BASIC26.19■■□□□ 1.78
CUX1P39880 AL451042.2-201ENST00000424774 904 ntTSL 2 BASIC26.19■■□□□ 1.78
CUX1P39880 SPATA3-204ENST00000433428 856 ntAPPRIS P2 TSL 1 (best) BASIC26.19■■□□□ 1.78
CUX1P39880 SPTLC1P5-201ENST00000450718 252 ntBASIC26.19■■□□□ 1.78
CUX1P39880 KRBOX4-206ENST00000478600 730 ntAPPRIS ALT2 TSL 2 BASIC26.19■■□□□ 1.78
CUX1P39880 SLCO2B1-205ENST00000525650 2121 ntTSL 2 BASIC26.19■■□□□ 1.78
CUX1P39880 TBCB-211ENST00000589996 724 ntTSL 3 BASIC26.19■■□□□ 1.78
CUX1P39880 IGFLR1-211ENST00000592889 782 ntAPPRIS ALT2 TSL 1 (best) BASIC26.19■■□□□ 1.78
CUX1P39880 NADK-201ENST00000341426 3235 ntAPPRIS P3 TSL 2 BASIC26.19■■□□□ 1.78
CUX1P39880 GPR157-201ENST00000377411 5265 ntAPPRIS P1 TSL 1 (best) BASIC26.18■■□□□ 1.78
CUX1P39880 HRASLS5-206ENST00000540857 3032 ntAPPRIS ALT2 TSL 1 (best) BASIC26.18■■□□□ 1.78
CUX1P39880 ADORA2A-213ENST00000610595 2736 ntAPPRIS P1 TSL 2 BASIC26.18■■□□□ 1.78
CUX1P39880 CDC14B-203ENST00000375242 2965 ntTSL 2 BASIC26.18■■□□□ 1.78
CUX1P39880 FAM83A-201ENST00000276699 1858 ntTSL 1 (best) BASIC26.18■■□□□ 1.78
CUX1P39880 SEPHS1-202ENST00000378614 2387 ntTSL 1 (best) BASIC26.18■■□□□ 1.78
CUX1P39880 PIKFYVE-204ENST00000407449 1898 ntTSL 1 (best) BASIC26.18■■□□□ 1.78
CUX1P39880 ADSL-202ENST00000342312 1808 ntTSL 1 (best) BASIC26.18■■□□□ 1.78
CUX1P39880 PDHB-206ENST00000474765 1503 ntTSL 5 BASIC26.18■■□□□ 1.78
CUX1P39880 BATF-201ENST00000286639 980 ntAPPRIS P1 TSL 1 (best) BASIC26.18■■□□□ 1.78
CUX1P39880 HIST2H2AA3-201ENST00000369159 549 ntAPPRIS P1 BASIC26.18■■□□□ 1.78
CUX1P39880 CAMKMT-203ENST00000403853 1114 ntTSL 1 (best) BASIC26.18■■□□□ 1.78
CUX1P39880 TCEAL4-208ENST00000472484 1273 ntAPPRIS P3 TSL 1 (best) BASIC26.18■■□□□ 1.78
CUX1P39880 SERPINA13P-202ENST00000478994 924 ntBASIC26.18■■□□□ 1.78
CUX1P39880 LEF1-AS1-204ENST00000508266 559 ntTSL 4 BASIC26.18■■□□□ 1.78
CUX1P39880 AC025259.3-202ENST00000564363 687 ntTSL 2 BASIC26.18■■□□□ 1.78
CUX1P39880 MIR4722-201ENST00000578292 60 ntBASIC26.18■■□□□ 1.78
CUX1P39880 RN7SL574P-201ENST00000581512 297 ntBASIC26.18■■□□□ 1.78
CUX1P39880 SEPT9-233ENST00000590917 541 ntTSL 4 BASIC26.18■■□□□ 1.78
CUX1P39880 AC025181.2-201ENST00000606994 802 ntBASIC26.18■■□□□ 1.78
CUX1P39880 AP001505.2-201ENST00000616815 443 ntBASIC26.18■■□□□ 1.78
CUX1P39880 ENPP7P14-201ENST00000621765 1040 ntBASIC26.18■■□□□ 1.78
CUX1P39880 KLHL22-201ENST00000328879 2616 ntAPPRIS P1 TSL 1 (best) BASIC26.18■■□□□ 1.78
CUX1P39880 SHISA5-209ENST00000443308 1933 ntTSL 2 BASIC26.18■■□□□ 1.78
CUX1P39880 ROPN1-203ENST00000459660 1909 ntTSL 1 (best) BASIC26.18■■□□□ 1.78
CUX1P39880 MTX3-201ENST00000509852 1655 ntTSL 1 (best) BASIC26.18■■□□□ 1.78
CUX1P39880 TAF6-209ENST00000452041 2297 ntAPPRIS P1 TSL 1 (best) BASIC26.17■■□□□ 1.78
CUX1P39880 KCNMA1-209ENST00000372443 5059 ntAPPRIS ALT2 TSL 5 BASIC26.17■■□□□ 1.78
CUX1P39880 ARFRP1-213ENST00000619493 2456 ntAPPRIS P1 TSL 3 BASIC26.17■■□□□ 1.78
CUX1P39880 TPM2-202ENST00000360958 1189 ntAPPRIS P5 TSL 1 (best) BASIC26.17■■□□□ 1.78
CUX1P39880 FAM27C-201ENST00000377542 616 ntTSL 1 (best) BASIC26.17■■□□□ 1.78
CUX1P39880 EIF3M-203ENST00000524896 1207 ntTSL 2 BASIC26.17■■□□□ 1.78
CUX1P39880 AC138649.2-201ENST00000615886 705 ntBASIC26.17■■□□□ 1.78
CUX1P39880 ZNF282-204ENST00000610704 3722 ntAPPRIS P1 TSL 1 (best) BASIC26.17■■□□□ 1.78
CUX1P39880 TAF1B-201ENST00000263663 2387 ntAPPRIS P1 TSL 1 (best) BASIC26.17■■□□□ 1.78
CUX1P39880 AMBP-201ENST00000265132 1434 ntAPPRIS P1 TSL 1 (best) BASIC26.17■■□□□ 1.78
CUX1P39880 MAPKAPK3-201ENST00000357955 2500 ntAPPRIS P1 TSL 1 (best) BASIC26.17■■□□□ 1.78
CUX1P39880 SLC7A2-205ENST00000522656 2274 ntAPPRIS ALT1 TSL 1 (best) BASIC26.16■■□□□ 1.78
CUX1P39880 SPSB4-201ENST00000310546 2908 ntAPPRIS P1 TSL 1 (best) BASIC26.16■■□□□ 1.78
CUX1P39880 CHIA-206ENST00000430615 1320 ntTSL 1 (best) BASIC26.16■■□□□ 1.78
CUX1P39880 PTPN6-204ENST00000456013 2389 ntTSL 1 (best) BASIC26.16■■□□□ 1.78
CUX1P39880 DOK5-202ENST00000395939 1453 ntTSL 1 (best) BASIC26.16■■□□□ 1.78
CUX1P39880 CES4A-203ENST00000535696 1472 ntTSL 2 BASIC26.16■■□□□ 1.78
CUX1P39880 RAPH1-211ENST00000457812 2673 ntAPPRIS ALT2 TSL 2 BASIC26.16■■□□□ 1.78
CUX1P39880 SLC5A10-202ENST00000395643 1982 ntTSL 1 (best) BASIC26.16■■□□□ 1.78
CUX1P39880 BET1L-203ENST00000382762 2819 ntAPPRIS P1 TSL 1 (best) BASIC26.16■■□□□ 1.78
CUX1P39880 MSI2-204ENST00000442934 1624 ntTSL 2 BASIC26.16■■□□□ 1.78
CUX1P39880 MIR33B-201ENST00000385104 96 ntBASIC26.16■■□□□ 1.78
CUX1P39880 CYP46A4P-201ENST00000414953 267 ntBASIC26.16■■□□□ 1.78
CUX1P39880 AC010745.3-201ENST00000439745 415 ntTSL 3 BASIC26.16■■□□□ 1.78
CUX1P39880 AL161719.1-201ENST00000442716 385 ntTSL 5 BASIC26.16■■□□□ 1.78
CUX1P39880 USE1-202ENST00000445667 795 ntAPPRIS ALT1 TSL 5 BASIC26.16■■□□□ 1.78
CUX1P39880 BX324167.1-201ENST00000451118 805 ntTSL 5 BASIC26.16■■□□□ 1.78
CUX1P39880 VGLL4-214ENST00000451674 938 ntTSL 1 (best) BASIC26.16■■□□□ 1.78
CUX1P39880 PRPS2-205ENST00000489404 763 ntTSL 2 BASIC26.16■■□□□ 1.78
CUX1P39880 CYB561A3-219ENST00000544118 1136 ntTSL 5 BASIC26.16■■□□□ 1.78
CUX1P39880 AC011474.2-201ENST00000579268 543 ntTSL 3 BASIC26.16■■□□□ 1.78
CUX1P39880 PPY2P-201ENST00000582808 702 ntBASIC26.16■■□□□ 1.78
CUX1P39880 PPY2P-202ENST00000583761 657 ntTSL 1 (best) BASIC26.16■■□□□ 1.78
CUX1P39880 SNX1-214ENST00000625244 324 ntTSL 5 BASIC26.16■■□□□ 1.78
CUX1P39880 KRT8P14-201ENST00000414254 1442 ntBASIC26.16■■□□□ 1.78
CUX1P39880 DARS-AS1-209ENST00000594219 1420 ntTSL 5 BASIC26.16■■□□□ 1.78
CUX1P39880 GALNT11-205ENST00000430044 2727 ntAPPRIS P1 TSL 5 BASIC26.16■■□□□ 1.78
CUX1P39880 PLEKHG6-203ENST00000396988 2963 ntAPPRIS P1 TSL 2 BASIC26.16■■□□□ 1.78
CUX1P39880 SFTA3-204ENST00000518529 1531 ntAPPRIS P1 TSL 1 (best) BASIC26.16■■□□□ 1.78
CUX1P39880 DTX2-206ENST00000430490 2623 ntAPPRIS P3 TSL 1 (best) BASIC26.16■■□□□ 1.78
CUX1P39880 ABHD10-201ENST00000273359 2590 ntAPPRIS P1 TSL 1 (best) BASIC26.15■■□□□ 1.78
CUX1P39880 NKAIN1-201ENST00000373736 2589 ntAPPRIS P1 TSL 2 BASIC26.15■■□□□ 1.78
CUX1P39880 JAKMIP1-202ENST00000409021 2975 ntTSL 1 (best) BASIC26.15■■□□□ 1.78
CUX1P39880 SUSD2-201ENST00000358321 3404 ntAPPRIS P1 TSL 1 (best) BASIC26.15■■□□□ 1.78
CUX1P39880 WT1-203ENST00000379079 2466 ntTSL 1 (best) BASIC26.15■■□□□ 1.78
CUX1P39880 TXNRD3NB-202ENST00000383572 1131 ntAPPRIS P1 TSL 1 (best) BASIC26.15■■□□□ 1.78
CUX1P39880 AL139094.1-201ENST00000405549 1188 ntBASIC26.15■■□□□ 1.78
CUX1P39880 SNHG17-201ENST00000413755 648 ntTSL 3 BASIC26.15■■□□□ 1.78
CUX1P39880 DMPK-204ENST00000447742 2754 ntAPPRIS ALT2 TSL 1 (best) BASIC26.15■■□□□ 1.78
CUX1P39880 AC083949.1-202ENST00000458490 552 ntTSL 3 BASIC26.15■■□□□ 1.78
CUX1P39880 ACSL1-208ENST00000507295 2490 ntTSL 2 BASIC26.15■■□□□ 1.78
CUX1P39880 SQSTM1-213ENST00000510187 1714 ntTSL 5 BASIC26.15■■□□□ 1.78
CUX1P39880 AC022217.1-201ENST00000521069 738 ntBASIC26.15■■□□□ 1.78
CUX1P39880 WRAP53-210ENST00000534050 1736 ntTSL 1 (best) BASIC26.15■■□□□ 1.78
CUX1P39880 RERG-205ENST00000537647 935 ntTSL 2 BASIC26.15■■□□□ 1.78
CUX1P39880 ANAPC15-208ENST00000538393 867 ntAPPRIS P3 TSL 2 BASIC26.15■■□□□ 1.78
CUX1P39880 AC106820.3-201ENST00000561653 397 ntBASIC26.15■■□□□ 1.78
CUX1P39880 HCG18-245ENST00000602550 559 ntTSL 4 BASIC26.15■■□□□ 1.78
CUX1P39880 TMEM39B-201ENST00000336294 1813 ntAPPRIS P1 TSL 1 (best) BASIC26.15■■□□□ 1.78
CUX1P39880 CAMK2G-205ENST00000372765 1822 ntTSL 5 BASIC26.15■■□□□ 1.78
CUX1P39880 LINC00658-202ENST00000420529 1542 ntTSL 1 (best) BASIC26.15■■□□□ 1.78
Retrieved 100 of 98,524 protein–RNA pairs in 32.9 ms