Protein–RNA interactions for Protein: P06400

RB1, Retinoblastoma-associated protein, humanhuman

Predictions only

Length 928 aa.

Download Table  
Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
RB1P06400 SLC29A2-206ENST00000546034 2509 ntAPPRIS P1 TSL 5 BASIC16.79■□□□□ 0.28
RB1P06400 AL607033.1-201ENST00000623900 1599 ntBASIC16.79■□□□□ 0.28
RB1P06400 DHX33-201ENST00000225296 5618 ntAPPRIS P1 TSL 1 (best) BASIC16.79■□□□□ 0.28
RB1P06400 DMRTA2-201ENST00000404795 3137 ntAPPRIS P1 TSL 5 BASIC16.79■□□□□ 0.28
RB1P06400 USH1C-205ENST00000527020 2159 ntTSL 1 (best) BASIC16.79■□□□□ 0.28
RB1P06400 NSD3-201ENST00000316985 3995 ntTSL 1 (best) BASIC16.79■□□□□ 0.28
RB1P06400 CALHM2-202ENST00000369788 1843 ntAPPRIS P1 TSL 2 BASIC16.79■□□□□ 0.28
RB1P06400 SNX2-213ENST00000514949 2119 ntTSL 2 BASIC16.79■□□□□ 0.28
RB1P06400 TCF7-204ENST00000395029 3330 ntAPPRIS ALT2 TSL 5 BASIC16.79■□□□□ 0.28
RB1P06400 TCIRG1-201ENST00000265686 2677 ntAPPRIS P1 TSL 1 (best) BASIC16.79■□□□□ 0.28
RB1P06400 CPA1-201ENST00000011292 1487 ntAPPRIS P1 TSL 1 (best) BASIC16.79■□□□□ 0.28
RB1P06400 CYP2AB1P-202ENST00000454440 1456 ntBASIC16.79■□□□□ 0.28
RB1P06400 SH3BP4-202ENST00000392011 5194 ntAPPRIS P1 TSL 1 (best) BASIC16.79■□□□□ 0.28
RB1P06400 PCDHA13-202ENST00000409494 4884 ntTSL 1 (best) BASIC16.79■□□□□ 0.28
RB1P06400 CBS-201ENST00000352178 2583 ntAPPRIS P1 TSL 1 (best) BASIC16.79■□□□□ 0.28
RB1P06400 NID1-202ENST00000366595 5412 ntTSL 1 (best) BASIC16.79■□□□□ 0.28
RB1P06400 SNAP47-203ENST00000366760 1446 ntAPPRIS ALT2 TSL 2 BASIC16.79■□□□□ 0.28
RB1P06400 DRD5P1-201ENST00000456605 1438 ntBASIC16.79■□□□□ 0.28
RB1P06400 TSPAN17-201ENST00000298564 2810 ntTSL 2 BASIC16.78■□□□□ 0.28
RB1P06400 AC009292.1-201ENST00000502156 1986 ntTSL 1 (best) BASIC16.78■□□□□ 0.28
RB1P06400 KCNK3-201ENST00000302909 6162 ntAPPRIS P1 TSL 1 (best) BASIC16.78■□□□□ 0.28
RB1P06400 EPN2-203ENST00000395618 2216 ntTSL 2 BASIC16.78■□□□□ 0.28
RB1P06400 NDFIP1-201ENST00000253814 3851 ntAPPRIS P1 TSL 1 (best) BASIC16.78■□□□□ 0.28
RB1P06400 BID-201ENST00000317361 2495 ntTSL 1 (best) BASIC16.78■□□□□ 0.28
RB1P06400 HCN1-201ENST00000303230 9885 ntAPPRIS P1 TSL 1 (best) BASIC16.78■□□□□ 0.28
RB1P06400 TRMO-203ENST00000375119 1647 ntAPPRIS P1 TSL 1 (best) BASIC16.78■□□□□ 0.28
RB1P06400 MIPEP-201ENST00000382172 2400 ntAPPRIS P1 TSL 1 (best) BASIC16.78■□□□□ 0.28
RB1P06400 TBC1D4-202ENST00000377636 6364 ntAPPRIS P3 TSL 2 BASIC16.78■□□□□ 0.28
RB1P06400 APBB1-202ENST00000311051 2619 ntAPPRIS P3 TSL 1 (best) BASIC16.78■□□□□ 0.28
RB1P06400 RBM33-205ENST00000392759 1580 ntTSL 5 BASIC16.78■□□□□ 0.28
RB1P06400 NEO1-202ENST00000339362 7342 ntAPPRIS P3 TSL 5 BASIC16.78■□□□□ 0.28
RB1P06400 ACSM2A-203ENST00000417235 1835 ntTSL 2 BASIC16.78■□□□□ 0.28
RB1P06400 TDRP-201ENST00000324079 3395 ntAPPRIS P1 TSL 1 (best) BASIC16.78■□□□□ 0.28
RB1P06400 GDF5-202ENST00000374372 2572 ntAPPRIS P1 TSL 1 (best) BASIC16.78■□□□□ 0.28
RB1P06400 RBCK1-215ENST00000640614 2599 ntTSL 5 BASIC16.78■□□□□ 0.28
RB1P06400 BST2-201ENST00000252593 1019 ntAPPRIS P1 TSL 1 (best) BASIC16.78■□□□□ 0.28
RB1P06400 TEX29-201ENST00000283547 709 ntAPPRIS P1 TSL 1 (best) BASIC16.78■□□□□ 0.28
RB1P06400 DYNLRB2-201ENST00000305904 497 ntAPPRIS P1 TSL 1 (best) BASIC16.78■□□□□ 0.28
RB1P06400 PFDN5-202ENST00000334478 586 ntAPPRIS P1 TSL 1 (best) BASIC16.78■□□□□ 0.28
RB1P06400 VCX-201ENST00000341408 677 ntAPPRIS ALT2 TSL 5 BASIC16.78■□□□□ 0.28
RB1P06400 PGGT1BP2-201ENST00000398621 1028 ntBASIC16.78■□□□□ 0.28
RB1P06400 SUN1-204ENST00000403868 978 ntTSL 2 BASIC16.78■□□□□ 0.28
RB1P06400 U82695.1-202ENST00000428676 700 ntTSL 2 BASIC16.78■□□□□ 0.28
RB1P06400 AC004471.1-201ENST00000456035 582 ntTSL 4 BASIC16.78■□□□□ 0.28
RB1P06400 AL160412.1-202ENST00000616819 663 ntTSL 4 BASIC16.78■□□□□ 0.28
RB1P06400 AC132938.4-201ENST00000623835 848 ntBASIC16.78■□□□□ 0.28
RB1P06400 ABBA01031663.1-201ENST00000635630 790 ntBASIC16.78■□□□□ 0.28
RB1P06400 AC244452.3-201ENST00000636814 210 ntBASIC16.78■□□□□ 0.28
RB1P06400 AL121723.1-201ENST00000445194 1519 ntBASIC16.78■□□□□ 0.28
RB1P06400 AL158154.2-201ENST00000585776 2208 ntTSL 2 BASIC16.78■□□□□ 0.28
RB1P06400 SLC22A16-202ENST00000368919 1987 ntAPPRIS P2 TSL 1 (best) BASIC16.78■□□□□ 0.28
RB1P06400 CHRNA7-207ENST00000635884 1975 ntTSL 5 BASIC16.78■□□□□ 0.28
RB1P06400 PROSER1-201ENST00000352251 5168 ntAPPRIS P2 TSL 1 (best) BASIC16.78■□□□□ 0.28
RB1P06400 LMNB2-201ENST00000325327 4671 ntAPPRIS P1 TSL 1 (best) BASIC16.78■□□□□ 0.28
RB1P06400 KCNE3-201ENST00000310128 3143 ntAPPRIS P1 TSL 1 (best) BASIC16.78■□□□□ 0.28
RB1P06400 TPM1-201ENST00000267996 1670 ntTSL 1 (best) BASIC16.78■□□□□ 0.28
RB1P06400 MAGEA2-202ENST00000598543 1662 ntAPPRIS P1 TSL 1 (best) BASIC16.78■□□□□ 0.28
RB1P06400 USP27X-201ENST00000621775 2618 ntAPPRIS P1 BASIC16.78■□□□□ 0.28
RB1P06400 ELP6-201ENST00000296149 1401 ntAPPRIS P1 TSL 1 (best) BASIC16.78■□□□□ 0.28
RB1P06400 MIB2-219ENST00000505820 3305 ntAPPRIS P3 TSL 1 (best) BASIC16.78■□□□□ 0.28
RB1P06400 TACC1-202ENST00000317827 7802 ntAPPRIS P3 TSL 1 (best) BASIC16.78■□□□□ 0.28
RB1P06400 FAM118B-210ENST00000627851 1862 ntTSL 5 BASIC16.78■□□□□ 0.28
RB1P06400 GOLGA6L2-204ENST00000567107 3030 ntAPPRIS P2 TSL 5 BASIC16.78■□□□□ 0.28
RB1P06400 EPHX2-202ENST00000517536 1600 ntTSL 5 BASIC16.78■□□□□ 0.28
RB1P06400 CRTC1-201ENST00000321949 2501 ntAPPRIS P3 TSL 1 (best) BASIC16.77■□□□□ 0.28
RB1P06400 TEAD4-203ENST00000397122 1396 ntTSL 1 (best) BASIC16.77■□□□□ 0.28
RB1P06400 MFSD4A-207ENST00000536357 1841 ntTSL 2 BASIC16.77■□□□□ 0.28
RB1P06400 OBSL1-201ENST00000289656 2274 ntTSL 5 BASIC16.77■□□□□ 0.28
RB1P06400 ELF3-201ENST00000359651 4994 ntAPPRIS P1 TSL 1 (best) BASIC16.77■□□□□ 0.28
RB1P06400 MPV17L-201ENST00000287594 5820 ntTSL 1 (best) BASIC16.77■□□□□ 0.28
RB1P06400 GREB1-205ENST00000389825 1315 ntTSL 1 (best) BASIC16.77■□□□□ 0.28
RB1P06400 TEX264-205ENST00000416589 1313 ntAPPRIS P3 TSL 1 (best) BASIC16.77■□□□□ 0.28
RB1P06400 GCK-202ENST00000345378 2421 ntTSL 2 BASIC16.77■□□□□ 0.28
RB1P06400 KAT8-201ENST00000219797 1525 ntAPPRIS P1 TSL 1 (best) BASIC16.77■□□□□ 0.28
RB1P06400 IGF2-204ENST00000381406 5179 ntAPPRIS ALT1 TSL 2 BASIC16.77■□□□□ 0.28
RB1P06400 CBY1-201ENST00000216029 1133 ntAPPRIS P1 TSL 1 (best) BASIC16.77■□□□□ 0.28
RB1P06400 GUK1-206ENST00000366723 845 ntTSL 5 BASIC16.77■□□□□ 0.28
RB1P06400 TREM2-203ENST00000373122 1012 ntAPPRIS ALT2 TSL 1 (best) BASIC16.77■□□□□ 0.28
RB1P06400 BTBD6P1-201ENST00000412176 1267 ntBASIC16.77■□□□□ 0.28
RB1P06400 EPDR1-203ENST00000425345 947 ntAPPRIS ALT2 TSL 1 (best) BASIC16.77■□□□□ 0.28
RB1P06400 DGCR5-204ENST00000440005 1299 ntTSL 1 (best) BASIC16.77■□□□□ 0.28
RB1P06400 AC104306.2-201ENST00000451877 341 ntBASIC16.77■□□□□ 0.28
RB1P06400 OARD1-212ENST00000482515 832 ntTSL 2 BASIC16.77■□□□□ 0.28
RB1P06400 PFN2-215ENST00000497148 743 ntTSL 4 BASIC16.77■□□□□ 0.28
RB1P06400 HNRNPUP1-201ENST00000554987 333 ntBASIC16.77■□□□□ 0.28
RB1P06400 AC012322.1-201ENST00000561657 861 ntTSL 3 BASIC16.77■□□□□ 0.28
RB1P06400 AP005019.2-201ENST00000615104 511 ntBASIC16.77■□□□□ 0.28
RB1P06400 LINC00592-202ENST00000640420 768 ntTSL 5 BASIC16.77■□□□□ 0.28
RB1P06400 KRT9-202ENST00000588431 1493 ntTSL 1 (best) BASIC16.77■□□□□ 0.28
RB1P06400 TRIM11-202ENST00000366699 2511 ntTSL 2 BASIC16.77■□□□□ 0.28
RB1P06400 RTN4IP1-201ENST00000369063 1682 ntAPPRIS P1 TSL 1 (best) BASIC16.77■□□□□ 0.28
RB1P06400 VILL-207ENST00000465644 1857 ntTSL 5 BASIC16.77■□□□□ 0.27
RB1P06400 PRKCB-202ENST00000321728 2689 ntAPPRIS ALT1 TSL 1 (best) BASIC16.77■□□□□ 0.27
RB1P06400 ZYG11A-203ENST00000612017 3682 ntTSL 5 BASIC16.77■□□□□ 0.27
RB1P06400 PIGT-207ENST00000543458 2037 ntTSL 2 BASIC16.77■□□□□ 0.27
RB1P06400 DVL2-201ENST00000005340 3018 ntAPPRIS P2 TSL 1 (best) BASIC16.77■□□□□ 0.27
RB1P06400 ACTN4-201ENST00000252699 4963 ntAPPRIS P1 TSL 1 (best) BASIC16.77■□□□□ 0.27
RB1P06400 HMOX2-205ENST00000458134 1797 ntAPPRIS P1 TSL 5 BASIC16.77■□□□□ 0.27
RB1P06400 CLDN19-202ENST00000372539 1586 ntAPPRIS P1 TSL 1 (best) BASIC16.77■□□□□ 0.27
RB1P06400 ERBB2-205ENST00000578199 2526 ntTSL 1 (best) BASIC16.76■□□□□ 0.27
Retrieved 100 of 98,524 protein–RNA pairs in 39.1 ms